Curated matrix provenance
The original compilation includes phylogenetic footprinting, protein-binding microarrays, immunoprecipitation approaches, gene expression studies, and computational matrix inference. The table reports the actual count of candidate-matrix rows archived per source.
| Source in original database | Candidate matrices |
|---|---|
| Badis et. al. | 120 |
| Foat et. al. | 400 |
| Fordyce et. al. | 84 |
| Harbison et. al. | 105 |
| Macisaac et. al | 128 |
| Morozov et. al. | 79 |
| Pachkov et al | 80 |
| Zhao and Stormo | 92 |
| Zhu J and MQ Zhang | 20 |
| Zhu et. al. | 93 |
Validation datasets
Harbison et al. (2004) — ChIP-chip transcription factor occupancy. Reimand et al. (2010) — reanalysis of yeast transcription factor knockout expression data.
Database publication
Spivak and Stormo (2012), Nucleic Acids Research ↗
Some third-party supplementary data links in the original 2012 site may no longer resolve. Core data and figures presented in this archive are locally stored.