← All factors / TF RECORD
YRM1
YOR172W
Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrr1p, acting on an overlapping set of target genes
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content10.72
Max PWM score17.88
Recommended cutoff13.41
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.09 0.49 0.15 0.28 0.27 0.38 0.06 0.08 0.03 0.69 0.60 0.79 0.22 0.62 0.58 0.24 0.32 0.22 0.19 0.07 0.31 C | 0.53 0.09 0.33 0.25 0.44 0.15 0.76 0.03 0.02 0.05 0.03 0.05 0.03 0.02 0.17 0.21 0.12 0.47 0.25 0.10 0.14 G | 0.29 0.22 0.19 0.18 0.15 0.44 0.10 0.84 0.88 0.20 0.15 0.05 0.05 0.12 0.13 0.39 0.30 0.16 0.44 0.59 0.07 T | 0.10 0.21 0.33 0.29 0.14 0.03 0.07 0.05 0.06 0.06 0.21 0.11 0.70 0.24 0.12 0.16 0.26 0.14 0.13 0.24 0.49
Position count matrix (PCM)
A | 9 49 15 28 27 38 6 8 3 69 60 79 22 62 57 24 32 22 19 7 31 C | 53 9 33 25 44 15 76 3 2 5 3 5 3 2 17 21 12 47 25 10 14 G | 28 22 19 18 15 44 10 84 88 20 15 5 5 12 13 39 30 16 44 59 7 T | 10 21 33 28 14 3 7 5 6 6 21 11 70 24 12 16 26 14 13 24 49
Position weight matrix (PWM)
A | -1.27 0.43 -0.76 -0.13 -0.17 0.17 -1.67 -1.39 -2.37 0.77 0.63 0.90 -0.37 0.66 0.59 -0.29 0.00 -0.37 -0.52 -1.52 -0.03 C | 1.08 -0.69 0.61 0.33 0.89 -0.18 1.44 -1.79 -2.20 -1.28 -1.79 -1.28 -1.79 -2.20 -0.06 0.15 -0.41 0.96 0.33 -0.59 -0.25 G | 0.48 0.20 0.05 0.00 -0.18 0.89 -0.59 1.54 1.59 0.11 -0.18 -1.28 -1.28 -0.41 -0.33 0.77 0.51 -0.12 0.89 1.19 -0.94 T | -1.16 -0.42 0.03 -0.10 -0.83 -2.37 -1.52 -1.86 -1.67 -1.67 -0.42 -1.07 0.78 -0.29 -0.98 -0.69 -0.21 -0.83 -0.90 -0.29 0.43
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
YRM1Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content9.957
Max PWM score8.68
Recommended cutoff6.51
Position frequency matrix (PFM)
A | 0.02 0.01 0.01 0.97 0.60 0.93 0.12 C | 0.94 0.01 0.01 0.01 0.12 0.01 0.08 G | 0.02 0.97 0.97 0.01 0.16 0.01 0.04 T | 0.02 0.01 0.01 0.01 0.12 0.05 0.76
Position count matrix (PCM)
A | 2 1 1 97 60 93 12 C | 94 1 1 1 12 1 8 G | 2 97 97 1 16 1 4 T | 2 1 1 1 12 5 76
Position weight matrix (PWM)
A | -2.77 -3.47 -3.47 1.11 0.63 1.07 -0.98 C | 1.65 -2.89 -2.89 -2.89 -0.41 -2.89 -0.81 G | -2.20 1.68 1.68 -2.89 -0.12 -2.89 -1.50 T | -2.77 -3.47 -3.47 -3.47 -0.98 -1.86 0.86
YRM1Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content0.9125
Max PWM score3.73
Recommended cutoff2.8
Position frequency matrix (PFM)
A | 0.286 0.274 0.298 0.286 0.286 0.274 0.304 0.550 C | 0.225 0.222 0.227 0.225 0.200 0.205 0.182 0.086 G | 0.294 0.291 0.259 0.272 0.292 0.293 0.292 0.296 T | 0.195 0.213 0.216 0.218 0.223 0.228 0.223 0.069
Position count matrix (PCM)
A | 28 27 29 28 28 27 30 55 C | 22 22 22 22 20 20 18 8 G | 29 29 25 27 29 29 29 29 T | 19 21 21 21 22 22 22 6
Position weight matrix (PWM)
A | -0.11 -0.16 -0.07 -0.11 -0.11 -0.16 -0.05 0.54 C | 0.22 0.21 0.23 0.22 0.11 0.13 0.01 -0.74 G | 0.49 0.48 0.36 0.41 0.48 0.49 0.48 0.50 T | -0.50 -0.41 -0.39 -0.38 -0.36 -0.34 -0.36 -1.53
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 4 genes
CAT8, MIG3, PDR1, SKN7