← All factors / TF RECORD
YPR196W
No recorded aliases
Function unknown
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.0516
Information content9.054
Max PWM score9.47
Recommended cutoff4.82
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.60 0.31 0.17 0.24 0.17 0.12 0.01 0.01 0.03 C | 0.01 0.01 0.01 0.04 0.44 0.32 0.91 0.97 0.01 G | 0.26 0.01 0.01 0.02 0.11 0.07 0.07 0.01 0.91 T | 0.13 0.67 0.81 0.70 0.28 0.49 0.01 0.01 0.05
Position count matrix (PCM)
A | 60 31 17 24 17 12 1 1 3 C | 1 1 1 4 44 32 91 97 1 G | 26 1 1 2 11 7 7 1 91 T | 13 67 81 70 28 49 1 1 5
Position weight matrix (PWM)
A | 0.63 -0.03 -0.63 -0.29 -0.63 -0.98 -3.47 -3.47 -2.37 C | -2.89 -2.89 -2.89 -1.50 0.89 0.58 1.62 1.68 -2.89 G | 0.37 -2.89 -2.89 -2.20 -0.49 -0.94 -0.94 -2.89 1.62 T | -0.90 0.74 0.93 0.78 -0.13 0.43 -3.47 -3.47 -1.86
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 3
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
YPR196WFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content21.19
Max PWM score23.6
Recommended cutoff17.7
Position frequency matrix (PFM)
A | 0.01 0.02 0.28 0.97 0.01 0.01 0.77 0.55 0.31 0.22 0.01 0.52 0.08 0.01 0.34 0.08 0.04 0.29 0.29 0.14 0.01 0.01 0.01 0.33 0.03 0.42 C | 0.47 0.24 0.01 0.01 0.35 0.01 0.13 0.01 0.31 0.01 0.37 0.32 0.12 0.65 0.12 0.57 0.30 0.01 0.01 0.36 0.01 0.01 0.04 0.01 0.20 0.05 G | 0.51 0.26 0.66 0.01 0.64 0.01 0.01 0.07 0.23 0.38 0.22 0.16 0.16 0.20 0.53 0.35 0.43 0.34 0.35 0.49 0.01 0.92 0.94 0.19 0.44 0.09 T | 0.01 0.48 0.05 0.01 0.01 0.97 0.10 0.37 0.14 0.40 0.41 0.01 0.64 0.15 0.01 0.01 0.22 0.37 0.35 0.02 0.97 0.06 0.01 0.47 0.32 0.44
Position count matrix (PCM)
A | 1 2 28 97 1 1 77 55 31 22 1 52 8 1 34 8 4 28 28 14 1 1 1 33 3 42 C | 47 24 1 1 35 1 13 1 31 1 37 32 12 65 12 56 30 1 1 36 1 1 4 1 20 5 G | 51 26 66 1 64 1 1 7 23 38 22 16 16 20 53 35 43 34 35 49 1 92 94 19 44 9 T | 1 48 5 1 1 97 10 37 14 40 41 1 64 15 1 1 22 37 35 2 97 6 1 47 32 44
Position weight matrix (PWM)
A | -3.47 -2.77 -0.13 1.11 -3.47 -3.47 0.88 0.54 -0.03 -0.37 -3.47 0.49 -1.39 -3.47 0.06 -1.39 -2.08 -0.10 -0.10 -0.83 -3.47 -3.47 -3.47 0.03 -2.37 0.27 C | 0.96 0.29 -2.89 -2.89 0.66 -2.89 -0.33 -2.89 0.54 -2.89 0.72 0.58 -0.41 1.28 -0.41 1.15 0.51 -2.89 -2.89 0.69 -2.89 -2.89 -1.50 -2.89 0.11 -1.28 G | 1.04 0.37 1.30 -2.89 1.27 -2.89 -2.89 -0.94 0.25 0.75 0.20 -0.12 -0.12 0.11 1.08 0.66 0.87 0.64 0.66 1.00 -2.89 1.63 1.65 0.05 0.89 -0.69 T | -3.47 0.41 -1.86 -3.47 -3.47 1.11 -1.16 0.15 -0.83 0.22 0.25 -3.47 0.69 -0.76 -3.47 -3.47 -0.37 0.15 0.09 -2.77 1.11 -1.67 -3.47 0.38 0.00 0.32
YPR196WZhu et. al.P = 0.4795View matrix ↘
Fisher’s P-value0.4795
Information content9.272
Max PWM score12.11
Recommended cutoff6.24
Position frequency matrix (PFM)
A | 0.56 0.28 0.24 0.17 0.15 0.38 0.74 0.36 0.11 0.12 0.16 0.14 0.02 0.03 0.03 C | 0.15 0.19 0.30 0.16 0.35 0.10 0.03 0.01 0.03 0.06 0.50 0.29 0.86 0.92 0.08 G | 0.11 0.19 0.24 0.16 0.23 0.23 0.10 0.02 0.01 0.02 0.03 0.04 0.11 0.04 0.83 T | 0.18 0.34 0.21 0.51 0.27 0.29 0.13 0.62 0.84 0.79 0.31 0.52 0.02 0.01 0.05
Position count matrix (PCM)
A | 56 28 24 17 15 38 74 36 11 12 16 14 2 3 3 C | 15 19 30 16 35 10 3 1 3 6 50 28 86 92 8 G | 11 19 24 16 23 23 10 2 1 2 3 4 11 4 83 T | 18 34 21 51 27 28 13 62 84 79 31 52 2 1 5
Position weight matrix (PWM)
A | 0.56 -0.13 -0.29 -0.63 -0.76 0.17 0.84 0.12 -1.07 -0.98 -0.69 -0.83 -2.77 -2.37 -2.37 C | -0.18 0.05 0.51 -0.12 0.66 -0.59 -1.79 -2.89 -1.79 -1.10 1.02 0.48 1.56 1.63 -0.81 G | -0.49 0.05 0.29 -0.12 0.25 0.25 -0.59 -2.20 -2.89 -2.20 -1.79 -1.50 -0.49 -1.50 1.53 T | -0.58 0.06 -0.42 0.47 -0.17 -0.10 -0.90 0.66 0.97 0.90 -0.03 0.49 -2.77 -3.47 -1.86
YPR196WZhao and StormoP = 1View matrix ↘
Fisher’s P-value1
Information content0.7131
Max PWM score3.68
Recommended cutoff3.29
Position frequency matrix (PFM)
A | 0.228 0.248 0.294 0.253 0.301 0.289 0.334 0.417 C | 0.308 0.234 0.201 0.241 0.192 0.197 0.147 0.177 G | 0.271 0.325 0.306 0.256 0.284 0.280 0.299 0.231 T | 0.193 0.193 0.199 0.251 0.223 0.234 0.220 0.175
Position count matrix (PCM)
A | 22 24 29 25 30 28 33 41 C | 30 23 20 24 19 19 14 17 G | 27 32 30 25 28 28 29 23 T | 19 19 19 25 22 23 22 17
Position weight matrix (PWM)
A | -0.34 -0.25 -0.08 -0.23 -0.06 -0.10 0.04 0.26 C | 0.54 0.26 0.11 0.29 0.06 0.09 -0.20 -0.02 G | 0.41 0.59 0.53 0.35 0.46 0.44 0.51 0.25 T | -0.51 -0.51 -0.48 -0.24 -0.36 -0.31 -0.37 -0.60
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 20 genes
YAR019C, YBL095W, YCR018C-A, YCR019W, YDR543C, YER189W, YER190W, YGL258W, YHR073W, YHR091C, YJL134W, YJL135W, YJL136C, YLR463C, YLR465C, YLR467W, YNL337W, YNL338W, YNL339C, YOL160W
Genes affected by TF deletion 63 genes
YDR370C, YOL015W, YOL047C, YDR222W, YHR146W, YJL115W, YDL127W, YPL014W, YMR103C, YGR250C, YBR129C, YJL017W, YMR104C, YMR136W, YER029C, YLR183C, YCR021C, YDR074W, YOR267C, YKL051W, YLR438C-A, YMR199W, YOR074C, YOR384W, YFR017C, YMR145C, YNL309W, YIR035C, YMR144W, YNL120C, YOL149W, YPL275W, YBR264C, YER064C, YNL310C, YOR273C, YGR138C, YHR160C, YNL289W, YGR139W, YDL048C, YGR079W, YLR384C, YOR305W, YOR367W, YNL160W, YBR054W, YLR297W, YHR200W, YDR055W, YMR034C, YMR181C, YMR250W, YDL025C, YDL056W, YDR488C, YGR023W, YGR051C, YHR079C-A, YJR141W, YNL169C, YOL101C, YNR019W
Predicted TF–TF partners 8 genes
CIN5, GSM1, IME1, MIG3, OAF1, PDR8, RGT1, UME6