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YPR022C

No recorded aliases

View at SGD ↗

Function unknown

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.
Fisher’s P-value0.362
Information content11.12
Max PWM score9.1
Recommended cutoff5.11
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.15 0.01 0.01 0.01 0.97 0.01 
C | 0.65 0.97 0.97 0.97 0.01 0.97 
G | 0.01 0.01 0.01 0.01 0.01 0.01 
T | 0.20 0.01 0.01 0.01 0.01 0.01 
Position count matrix (PCM)
A |  15   1   1   1  97   1 
C |  65  97  97  97   1  97 
G |   1   1   1   1   1   1 
T |  20   1   1   1   1   1 
Position weight matrix (PWM)
A | -0.76 -3.47 -3.47 -3.47  1.11 -3.47 
C |  1.28  1.68  1.68  1.68 -2.89  1.68 
G | -2.89 -2.89 -2.89 -2.89 -2.89 -2.89 
T | -0.47 -3.47 -3.47 -3.47 -3.47 -3.47 
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YPR022CFoat et. al.P = 1View matrix ↘
Sequence logo for YPR022C
Fisher’s P-value1
Information content18.18
Max PWM score23.44
Recommended cutoff17.58
Position frequency matrix (PFM)
A | 0.02 0.01 0.14 0.01 0.97 0.01 0.16 0.02 0.24 0.09 0.20 0.12 0.07 0.46 0.02 0.27 0.63 0.40 0.25 0.29 0.09 0.01 0.08 0.60 0.02 0.52 
C | 0.09 0.31 0.37 0.01 0.01 0.96 0.05 0.17 0.27 0.51 0.18 0.10 0.01 0.34 0.50 0.12 0.03 0.01 0.16 0.10 0.31 0.01 0.01 0.10 0.47 0.01 
G | 0.59 0.24 0.22 0.91 0.01 0.02 0.44 0.10 0.34 0.06 0.34 0.46 0.57 0.17 0.37 0.12 0.05 0.38 0.26 0.49 0.16 0.01 0.90 0.29 0.41 0.38 
T | 0.30 0.44 0.28 0.07 0.01 0.01 0.35 0.71 0.15 0.34 0.27 0.32 0.35 0.03 0.11 0.49 0.28 0.21 0.33 0.12 0.43 0.97 0.01 0.01 0.10 0.09 
Position count matrix (PCM)
A |   2   1  14   1  97   1  16   2  24   9  20  12   7  46   2  27  63  40  25  28   9   1   8  60   2  52 
C |   9  31  37   1   1  96   5  17  27  51  18  10   1  34  50  12   3   1  16  10  31   1   1  10  47   1 
G |  59  24  22  91   1   2  44  10  34   6  34  46  56  17  37  12   5  38  26  49  16   1  90  28  41  38 
T |  30  44  28   7   1   1  35  71  15  34  27  32  35   3  11  49  28  21  33  12  43  97   1   1  10   9 
Position weight matrix (PWM)
A | -2.77 -3.47 -0.83 -3.47  1.11 -3.47 -0.69 -2.77 -0.29 -1.27 -0.47 -0.98 -1.52  0.36 -2.77 -0.17  0.68  0.22 -0.25 -0.10 -1.27 -3.47 -1.39  0.63 -2.77  0.49 
C | -0.69  0.54  0.72 -2.89 -2.89  1.67 -1.28 -0.06  0.41  1.04  0.00 -0.59 -2.89  0.64  1.02 -0.41 -1.79 -2.89 -0.12 -0.59  0.54 -2.89 -2.89 -0.59  0.96 -2.89 
G |  1.19  0.29  0.20  1.62 -2.89 -2.20  0.89 -0.59  0.64 -1.10  0.64  0.94  1.15 -0.06  0.72 -0.41 -1.28  0.75  0.37  1.00 -0.12 -2.89  1.61  0.48  0.82  0.75 
T | -0.06  0.32 -0.13 -1.52 -3.47 -3.47  0.09  0.80 -0.76  0.06 -0.17  0.00  0.09 -2.37 -1.07  0.43 -0.13 -0.42  0.03 -0.98  0.30  1.11 -3.47 -3.47 -1.16 -1.27 
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 76 genes

YAR007C, YAR008W, YAR050W, YBL050W, YBL051C, YBL074C, YBR062C, YBR064W, YCR054C, YCR082W, YDL001W, YDL002C, YDL137W, YDL156W, YDL157C, YDL158C, YDR310C, YDR311W, YDR355C, YGL205W, YGL206C, YGR015C, YGR016W, YGR053C, YGR054W, YGR084C, YGR215W, YGR222W, YHL002W, YHL003C, YHR005C-A, YHR022C, YHR023W, YHR067W, YIL084C, YJL014W, YJL016W, YJR030C, YKL143W, YKL144C, YKL201C, YLL040C, YLR065C, YLR066W, YLR242C, YLR243W, YLR309C, YLR345W, YLR440C, YML129C, YMR066W, YMR119W, YMR119W-A, YMR154C, YMR155W, YMR188C, YMR189W, YMR268C, YMR269W, YMR287C, YMR288W, YNL021W, YNL022C, YNL025C, YNL145W, YOR343C-A, YOR343C-B, YPL005W, YPL196W, YPL197C, YPL198W, YPR001W, YPR082C, YPR083W, YPR110C, YPR111W

Genes affected by TF deletion 51 genes

YBR004C, YOR381W, YBL083C, YDR433W, YPL014W, YPR138C, YLR374C, YMR103C, YGR250C, YJL017W, YMR104C, YLR121C, YCR021C, YOR267C, YKL051W, YPL055C, YPL029W, YMR023C, YOR384W, YMR145C, YOR297C, YPR022C, YBR261C, YBR293W, YBR295W, YCL028W, YDR286C, YIR035C, YLR375W, YJL188C, YPL087W, YDR386W, YKR057W, YKR030W, YNL065W, YGR138C, YLR414C, YGR139W, YCL038C, YKL031W, YNL160W, YOL155C, YBR054W, YLR297W, YDR055W, YMR034C, YLR047C, YMR181C, YMR250W, YBR281C, YDR304C