← All factors / TF RECORD
YPR013C
No recorded aliases
Function unknown
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content12.94
Max PWM score11.2
Recommended cutoff8.39
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.55 0.44 0.01 0.01 0.01 0.96 0.71 0.97 0.01 0.01 0.64 C | 0.08 0.21 0.52 0.01 0.02 0.02 0.01 0.01 0.01 0.97 0.30 G | 0.24 0.23 0.01 0.97 0.01 0.01 0.27 0.01 0.01 0.01 0.02 T | 0.13 0.12 0.45 0.01 0.96 0.01 0.01 0.01 0.97 0.01 0.04
Position count matrix (PCM)
A | 55 44 1 1 1 96 71 97 1 1 64 C | 8 21 52 1 2 2 1 1 1 97 30 G | 24 23 1 97 1 1 27 1 1 1 2 T | 13 12 45 1 96 1 1 1 97 1 4
Position weight matrix (PWM)
A | 0.54 0.32 -3.47 -3.47 -3.47 1.10 0.80 1.11 -3.47 -3.47 0.69 C | -0.81 0.15 1.06 -2.89 -2.20 -2.20 -2.89 -2.89 -2.89 1.68 0.51 G | 0.29 0.25 -2.89 1.68 -2.89 -2.89 0.41 -2.89 -2.89 -2.89 -2.20 T | -0.90 -0.98 0.34 -3.47 1.10 -3.47 -3.47 -3.47 1.11 -3.47 -2.08
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
YPR013CBadis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content9.388
Max PWM score8.12
Recommended cutoff6.09
Position frequency matrix (PFM)
A | 0.01 0.09 0.62 0.39 0.97 0.01 0.01 C | 0.01 0.26 0.26 0.01 0.01 0.01 0.97 G | 0.97 0.01 0.01 0.59 0.01 0.01 0.01 T | 0.01 0.64 0.11 0.01 0.01 0.97 0.01
Position count matrix (PCM)
A | 1 9 62 39 97 1 1 C | 1 26 26 1 1 1 97 G | 97 1 1 59 1 1 1 T | 1 64 11 1 1 97 1
Position weight matrix (PWM)
A | -3.47 -1.27 0.66 0.20 1.11 -3.47 -3.47 C | -2.89 0.37 0.37 -2.89 -2.89 -2.89 1.68 G | 1.68 -2.89 -2.89 1.19 -2.89 -2.89 -2.89 T | -3.47 0.69 -1.07 -3.47 -3.47 1.11 -3.47
YPR013CZhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content7.729
Max PWM score8.1
Recommended cutoff6.08
Position frequency matrix (PFM)
A | 0.033 0.997 0.024 0.098 0.159 0.542 0.047 0.329 C | 0.032 0.001 0.001 0.408 0.080 0.100 0.886 0.141 G | 0.911 0.001 0.001 0.074 0.215 0.241 0.013 0.386 T | 0.024 0.001 0.974 0.420 0.545 0.117 0.054 0.144
Position count matrix (PCM)
A | 3 99 2 9 15 54 4 32 C | 3 0 0 40 8 10 88 14 G | 91 0 0 7 21 24 1 38 T | 2 0 97 42 54 11 5 14
Position weight matrix (PWM)
A | -2.27 1.14 -2.59 -1.18 -0.70 0.53 -1.92 0.03 C | -1.73 -5.19 -5.19 0.82 -0.81 -0.59 1.59 -0.24 G | 1.62 -5.19 -5.19 -0.89 0.18 0.29 -2.63 0.76 T | -2.59 -5.77 1.11 0.27 0.53 -1.01 -1.78 -0.80
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data