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YNR063W

No recorded aliases

View at SGD ↗

Function unknown

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.
Fisher’s P-value0.07171
Information content11.28
Max PWM score10.03
Recommended cutoff6.74
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.08 0.01 0.01 0.01 0.97 0.10 0.88 0.32 
C | 0.08 0.97 0.01 0.01 0.01 0.01 0.01 0.03 
G | 0.18 0.01 0.97 0.97 0.01 0.79 0.01 0.03 
T | 0.67 0.01 0.01 0.01 0.01 0.10 0.10 0.62 
Position count matrix (PCM)
A |   8   1   1   1  97  10  88  32 
C |   8  97   1   1   1   1   1   3 
G |  18   1  97  97   1  79   1   3 
T |  67   1   1   1   1  10  10  62 
Position weight matrix (PWM)
A | -1.39 -3.47 -3.47 -3.47  1.11 -1.16  1.01  0.00 
C | -0.81  1.68 -2.89 -2.89 -2.89 -2.89 -2.89 -1.79 
G |  0.00 -2.89  1.68  1.68 -2.89  1.48 -2.89 -1.79 
T |  0.74 -3.47 -3.47 -3.47 -3.47 -1.16 -1.16  0.66 
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 3

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YNR063WFoat et. al.P = 1View matrix ↘
Sequence logo for YNR063W
Fisher’s P-value1
Information content12.99
Max PWM score13.67
Recommended cutoff10.25
Position frequency matrix (PFM)
A | 0.97 0.01 0.18 0.10 0.01 0.10 0.07 0.01 0.93 0.17 0.07 0.01 
C | 0.01 0.13 0.05 0.73 0.72 0.04 0.01 0.04 0.01 0.17 0.09 0.01 
G | 0.01 0.81 0.01 0.01 0.12 0.08 0.01 0.77 0.06 0.18 0.81 0.03 
T | 0.01 0.05 0.76 0.17 0.15 0.77 0.91 0.17 0.01 0.47 0.03 0.94 
Position count matrix (PCM)
A |  97   1  18  10   1  10   7   1  93  17   7   1 
C |   1  13   5  73  72   4   1   4   1  17   9   1 
G |   1  81   1   1  12   8   1  77   6  18  81   3 
T |   1   5  76  17  15  77  91  17   1  47   3  94 
Position weight matrix (PWM)
A |  1.11 -3.47 -0.58 -1.16 -3.47 -1.16 -1.52 -3.47  1.07 -0.63 -1.52 -3.47 
C | -2.89 -0.33 -1.28  1.40  1.39 -1.50 -2.89 -1.50 -2.89 -0.06 -0.69 -2.89 
G | -2.89  1.50 -2.89 -2.89 -0.41 -0.81 -2.89  1.45 -1.10  0.00  1.50 -1.79 
T | -3.47 -1.86  0.86 -0.63 -0.76  0.88  1.05 -0.63 -3.47  0.38 -2.37  1.08 
YNR063WZhu et. al.P = 0.1177View matrix ↘
Sequence logo for YNR063W
Fisher’s P-value0.1177
Information content11.85
Max PWM score10.34
Recommended cutoff5.91
Position frequency matrix (PFM)
A | 0.72 0.19 0.08 0.01 0.01 0.01 0.01 0.84 
C | 0.01 0.03 0.85 0.01 0.97 0.95 0.01 0.02 
G | 0.01 0.01 0.02 0.01 0.01 0.03 0.97 0.12 
T | 0.26 0.77 0.05 0.97 0.01 0.01 0.01 0.02 
Position count matrix (PCM)
A |  72  19   8   1   1   1   1  84 
C |   1   3  85   1  97  95   1   2 
G |   1   1   2   1   1   3  97  12 
T |  26  77   5  97   1   1   1   2 
Position weight matrix (PWM)
A |  0.81 -0.52 -1.39 -3.47 -3.47 -3.47 -3.47  0.97 
C | -2.89 -1.79  1.55 -2.89  1.68  1.66 -2.89 -2.20 
G | -2.89 -2.89 -2.20 -2.89 -2.89 -1.79  1.68 -0.41 
T | -0.21  0.88 -1.86  1.11 -3.47 -3.47 -3.47 -2.77 
YNR063WZhao and StormoP = 1View matrix ↘
Sequence logo for YNR063W
Fisher’s P-value1
Information content3.246
Max PWM score6.4
Recommended cutoff5.17
Position frequency matrix (PFM)
A | 0.481 0.272 0.208 0.166 0.160 0.116 0.129 0.423 
C | 0.076 0.163 0.391 0.143 0.662 0.675 0.058 0.177 
G | 0.094 0.080 0.120 0.123 0.026 0.073 0.672 0.198 
T | 0.349 0.485 0.281 0.568 0.152 0.136 0.141 0.202 
Position count matrix (PCM)
A |  48  27  20  16  16  11  12  42 
C |   7  16  39  14  66  67   5  17 
G |   9   8  12  12   2   7  67  19 
T |  34  48  28  56  15  13  14  20 
Position weight matrix (PWM)
A |  0.41 -0.16 -0.43 -0.66 -0.69 -1.01 -0.91  0.28 
C | -0.86 -0.10  0.78 -0.23  1.30  1.32 -1.13 -0.02 
G | -0.65 -0.81 -0.41 -0.38 -1.93 -0.90  1.32  0.10 
T |  0.09  0.42 -0.13  0.57 -0.74 -0.86 -0.82 -0.46 
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 91 genes

YAR007C, YAR008W, YBL050W, YBL051C, YBL074C, YBR060C, YBR062C, YBR064W, YBR120C, YBR154C, YBR155W, YBR254C, YBR255W, YBR292C, YCR017C, YCR054C, YCR099C, YCR100C, YDL001W, YDL002C, YDL156W, YDL157C, YDL158C, YDR089W, YDR091C, YDR092W, YDR318W, YDR355C, YDR440W, YDR461W, YER183C, YGL137W, YGL138C, YGR015C, YGR016W, YGR084C, YGR215W, YGR221C, YGR222W, YHL002W, YHL003C, YHR022C, YHR023W, YHR110W, YHR118C, YHR119W, YHR120W, YIR024C, YIR025W, YIR030C, YJL012C, YJL014W, YJL016W, YKL143W, YKL144C, YKL201C, YLR065C, YLR066W, YLR087C, YLR088W, YLR242C, YLR243W, YLR309C, YMR177W, YMR209C, YMR210W, YMR287C, YMR288W, YNL212W, YNL213C, YNL290W, YNL291C, YNR063W, YNR068C, YOL137W, YOL138C, YOR275C, YOR276W, YOR343C-A, YOR343C-B, YPL005W, YPL243W, YPL244C, YPL257W-A, YPL257W-B, YPL267W, YPR001W, YPR082C, YPR083W, YPR110C, YPR111W

Genes affected by TF deletion 17 genes

YNR063W, YKR070W, YPL016W, YOR131C, YFR006W, YMR238W, YLR131C, YOR043W, YGR013W, YBR259W, YDL170W, YOL119C, YGL092W, YJL194W, YLR297W, YAR047C, YOR034C

Genes supported by both experiments 1 genes

YNR063W