S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

YML081W

No recorded aliases

View at SGD ↗

Function unknown

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Zhao and Stormo
Fisher’s P-value0.001047
Information content8.22
Max PWM score8.46
Recommended cutoff4.38
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.194 0.034 0.001 0.064 0.286 0.075 
C | 0.718 0.825 0.956 0.900 0.019 0.801 
G | 0.019 0.001 0.001 0.001 0.397 0.037 
T | 0.069 0.140 0.042 0.036 0.297 0.087
Position count matrix (PCM)
A |  19   3   0   6  28   7 
C |  71  82  95  90   1  80 
G |   1   0   0   0  39   3 
T |   6  14   4   3  29   8
Position weight matrix (PWM)
A | -0.50 -2.24 -5.77 -1.61 -0.11 -1.45 
C |  1.38  1.52  1.67  1.61 -2.25  1.49 
G | -2.25 -5.19 -5.19 -5.19  0.79 -1.58 
T | -1.53 -0.83 -2.03 -2.18 -0.07 -1.30
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 4

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YML081WBadis et. al.P = 0.2903View matrix ↘
Sequence logo for YML081W
Fisher’s P-value0.2903
Information content11.59
Max PWM score9.41
Recommended cutoff8.97
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.30 0.01 0.44 
C | 0.97 0.97 0.97 0.97 0.01 0.97 0.16 
G | 0.01 0.01 0.01 0.01 0.36 0.01 0.03 
T | 0.01 0.01 0.01 0.01 0.34 0.01 0.38
Position count matrix (PCM)
A |   1   1   1   1  30   1  44 
C |  97  97  97  97   1  97  16 
G |   1   1   1   1  36   1   3 
T |   1   1   1   1  34   1  38
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -0.06 -3.47  0.32 
C |  1.68  1.68  1.68  1.68 -2.89  1.68 -0.12 
G | -2.89 -2.89 -2.89 -2.89  0.69 -2.89 -1.79 
T | -3.47 -3.47 -3.47 -3.47  0.06 -3.47  0.17
Badis et. al.
YML081WFoat et. al.P = 0.3787View matrix ↘
Sequence logo for YML081W
Fisher’s P-value0.3787
Information content16
Max PWM score17.34
Recommended cutoff9.44
Position frequency matrix (PFM)
A | 0.32 0.22 0.36 0.36 0.02 0.49 0.34 0.01 0.07 0.01 0.97 0.90 0.01 0.03 0.16 0.28 0.03 
C | 0.38 0.27 0.39 0.01 0.01 0.01 0.22 0.03 0.51 0.01 0.01 0.01 0.95 0.50 0.63 0.18 0.46 
G | 0.29 0.26 0.12 0.62 0.95 0.50 0.19 0.01 0.01 0.96 0.01 0.01 0.01 0.01 0.11 0.29 0.24 
T | 0.01 0.25 0.13 0.01 0.02 0.01 0.25 0.95 0.41 0.02 0.01 0.08 0.03 0.46 0.10 0.25 0.28
Position count matrix (PCM)
A |  32  22  36  36   2  49  34   1   7   1  97  90   1   3  16  28   3 
C |  38  27  39   1   1   1  22   3  51   1   1   1  95  50  63  18  46 
G |  28  26  12  62  95  50  19   1   1  96   1   1   1   1  11  28  24 
T |   1  25  13   1   2   1  25  95  41   2   1   8   3  46  10  25  28
Position weight matrix (PWM)
A |  0.00 -0.37  0.12  0.12 -2.77  0.43  0.06 -3.47 -1.52 -3.47  1.11  1.03 -3.47 -2.37 -0.69 -0.13 -2.37 
C |  0.75  0.41  0.77 -2.89 -2.89 -2.89  0.20 -1.79  1.04 -2.89 -2.89 -2.89  1.66  1.02  1.25  0.00  0.94 
G |  0.48  0.37 -0.41  1.24  1.66  1.02  0.05 -2.89 -2.89  1.67 -2.89 -2.89 -2.89 -2.89 -0.49  0.48  0.29 
T | -3.47 -0.25 -0.90 -3.47 -2.77 -3.47 -0.25  1.09  0.25 -2.77 -3.47 -1.39 -2.37  0.36 -1.16 -0.25 -0.13
Foat et. al.
YML081WMacisaac et. alP = 0.1976View matrix ↘
Sequence logo for YML081W
Fisher’s P-value0.1976
Information content15.52
Max PWM score12.68
Recommended cutoff10.61
Position frequency matrix (PFM)
A | 0.001 0.167 0.997 0.001 0.001 0.167 0.001 0.001 0.997 0.665 
C | 0.831 0.831 0.001 0.001 0.001 0.665 0.001 0.001 0.001 0.333 
G | 0.167 0.001 0.001 0.997 0.001 0.001 0.001 0.665 0.001 0.001 
T | 0.001 0.001 0.001 0.001 0.997 0.167 0.997 0.333 0.001 0.001
Position count matrix (PCM)
A |   0  16  99   0   0  16   0   0  99  66 
C |  83  83   0   0   0  66   0   0   0  33 
G |  16   0   0  99   0   0   0  66   0   0 
T |   0   0   0   0  99  16  99  33   0   0
Position weight matrix (PWM)
A | -5.77 -0.65  1.14 -5.77 -5.77 -0.65 -5.77 -5.77  1.14  0.73 
C |  1.53  1.53 -5.19 -5.19 -5.19  1.31 -5.19 -5.19 -5.19  0.62 
G | -0.07 -5.19 -5.19  1.71 -5.19 -5.19 -5.19  1.31 -5.19 -5.19 
T | -5.77 -5.77 -5.77 -5.77  1.14 -0.65  1.14  0.04 -5.77 -5.77
Macisaac et. al
YML081WZhu et. al.P = 0.04033View matrix ↘
Sequence logo for YML081W
Fisher’s P-value0.04033
Information content13.74
Max PWM score12.28
Recommended cutoff6.87
Position frequency matrix (PFM)
A | 0.13 0.79 0.04 0.01 0.01 0.01 0.11 0.01 0.69 
C | 0.11 0.08 0.94 0.95 0.97 0.97 0.01 0.97 0.08 
G | 0.07 0.07 0.01 0.01 0.01 0.01 0.80 0.01 0.01 
T | 0.69 0.06 0.01 0.03 0.01 0.01 0.08 0.01 0.22
Position count matrix (PCM)
A |  13  79   4   1   1   1  11   1  69 
C |  11   8  94  95  97  97   1  97   8 
G |   7   7   1   1   1   1  80   1   1 
T |  69   6   1   3   1   1   8   1  22
Position weight matrix (PWM)
A | -0.90  0.90 -2.08 -3.47 -3.47 -3.47 -1.07 -3.47  0.77 
C | -0.49 -0.81  1.65  1.66  1.68  1.68 -2.89  1.68 -0.81 
G | -0.94 -0.94 -2.89 -2.89 -2.89 -2.89  1.49 -2.89 -2.89 
T |  0.77 -1.67 -3.47 -2.37 -3.47 -3.47 -1.39 -3.47 -0.37
Zhu et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 48 genes

YCR018C-A, YCR019W, YCR024C-A, YDR040C, YDR041W, YDR042C, YDR194C, YDR195W, YDR278C, YDR472W, YEL007W, YEL033W, YEL034W, YEL035C, YER002W, YER007C-A, YGL001C, YGR060W, YHL009C, YHR144C, YIL015C-A, YJL148W, YJL191W, YJL192C, YJL200C, YKL096W-A, YKL097C, YKR040C, YKR042W, YLL004W, YLL005C, YLR011W, YLR046C, YLR112W, YLR334C, YLR367W, YMR014W, YMR186W, YMR193W, YNL030W, YNL031C, YNL066W, YNR050C, YOR153W, YOR192C-A, YOR192C-B, YOR236W, YPL062W

Genes affected by TF deletion 101 genes

YER145C, YAL005C, YLR056W, YNL241C, YPL017C, YOR381W, YHL047C, YMR042W, YMR015C, YGL038C, YGL012W, YGR151C, YOR066W, YPL016W, YPL018W, YOR382W, YHR053C, YHR055C, YPL272C, YER028C, YLR154C, YML027W, YHR183W, YBR093C, YBR067C, YBR129C, YGR060W, YIL175W, YMR136W, YNL180C, YOL109W, YOR316C, YDR281C, YER029C, YIL015W, YMR316C-B, YOR132W, YDR044W, YNL058C, YOR203W, YAR015W, YKL051W, YLR100W, YMR023C, YNL057W, YNR068C, YMR199W, YOR010C, YJR151C, YOL150C, YGR256W, YHR215W, YMR142C, YOL143C, YAR071W, YMR317W, YGL062W, YOR237W, YBR207W, YFR054C, YLR420W, YNL289W, YOR051C, YIL131C, YNL037C, YAR018C, YDR209C, YHR163W, YPL061W, YMR120C, YOL122C, YOR367W, YOR383C, YLR136C, YBR083W, YDR174W, YDR481C, YMR146C, YDL241W, YDR297W, YER044C, YNR044W, YMR006C, YDR270W, YEL065W, YGR146C, YGR176W, YCR005C, YMR034C, YBR244W, YGL032C, YGR177C, YLR047C, YLR049C, YNL264C, YML081W, YLR359W, YOR306C, YOR338W, YDR305C, YMR307W

Genes supported by both experiments 1 genes

YGR060W