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YLR278C

No recorded aliases

View at SGD ↗

Function unknown

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.
Fisher’s P-value0.004545
Information content10.36
Max PWM score9.08
Recommended cutoff5.06
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.94 0.04 0.23 0.27 
C | 0.97 0.01 0.01 0.01 0.14 0.02 0.05 
G | 0.01 0.97 0.97 0.04 0.81 0.05 0.05 
T | 0.01 0.01 0.01 0.01 0.01 0.70 0.63 
Position count matrix (PCM)
A |   1   1   1  94   4  23  27 
C |  97   1   1   1  14   2   5 
G |   1  97  97   4  81   5   5 
T |   1   1   1   1   1  70  63 
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47  1.08 -2.08 -0.33 -0.17 
C |  1.68 -2.89 -2.89 -2.89 -0.25 -2.20 -1.28 
G | -2.89  1.68  1.68 -1.50  1.50 -1.28 -1.28 
T | -3.47 -3.47 -3.47 -3.47 -3.47  0.78  0.68 
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YLR278CFoat et. al.P = 1View matrix ↘
Sequence logo for YLR278C
Fisher’s P-value1
Information content21.95
Max PWM score23.97
Recommended cutoff17.98
Position frequency matrix (PFM)
A | 0.30 0.15 0.56 0.01 0.97 0.01 0.27 0.37 0.75 0.50 0.14 0.09 0.32 0.01 0.01 0.29 0.21 0.06 0.01 0.09 0.02 0.09 0.02 0.02 
C | 0.04 0.16 0.01 0.01 0.01 0.90 0.16 0.05 0.02 0.01 0.83 0.01 0.18 0.24 0.04 0.36 0.63 0.01 0.97 0.01 0.96 0.30 0.01 0.23 
G | 0.10 0.67 0.20 0.97 0.01 0.02 0.04 0.31 0.18 0.10 0.02 0.46 0.23 0.72 0.10 0.19 0.01 0.60 0.01 0.01 0.01 0.16 0.49 0.11 
T | 0.56 0.02 0.24 0.01 0.01 0.07 0.53 0.27 0.04 0.39 0.01 0.44 0.27 0.03 0.85 0.16 0.15 0.33 0.01 0.89 0.01 0.45 0.47 0.64 
Position count matrix (PCM)
A |  30  15  56   1  97   1  27  37  75  50  14   9  32   1   1  28  21   6   1   9   2   9   2   2 
C |   4  16   1   1   1  90  16   5   2   1  83   1  18  24   4  36  63   1  97   1  96  30   1  23 
G |  10  67  20  97   1   2   4  31  18  10   2  46  23  72  10  19   1  60   1   1   1  16  49  11 
T |  56   2  24   1   1   7  53  27   4  39   1  44  27   3  85  16  15  33   1  89   1  45  47  64 
Position weight matrix (PWM)
A | -0.06 -0.76  0.56 -3.47  1.11 -3.47 -0.17  0.15  0.85  0.45 -0.83 -1.27  0.00 -3.47 -3.47 -0.10 -0.42 -1.67 -3.47 -1.27 -2.77 -1.27 -2.77 -2.77 
C | -1.50 -0.12 -2.89 -2.89 -2.89  1.61 -0.12 -1.28 -2.20 -2.89  1.53 -2.89  0.00  0.29 -1.50  0.69  1.25 -2.89  1.68 -2.89  1.67  0.51 -2.89  0.25 
G | -0.59  1.31  0.11  1.68 -2.89 -2.20 -1.50  0.54  0.00 -0.59 -2.20  0.94  0.25  1.39 -0.59  0.05 -2.89  1.20 -2.89 -2.89 -2.89 -0.12  1.00 -0.49 
T |  0.56 -2.77 -0.29 -3.47 -3.47 -1.52  0.50 -0.17 -2.08  0.20 -3.47  0.32 -0.17 -2.37  0.98 -0.69 -0.76  0.03 -3.47  1.02 -3.47  0.34  0.38  0.69 
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 112 genes

YAR007C, YAR008W, YAR050W, YBL016W, YBL017C, YBL050W, YBL051C, YBL074C, YBL101W-B, YBR060C, YBR062C, YBR064W, YBR121C, YBR154C, YBR155W, YBR232C, YBR236C, YBR237W, YCR026C, YCR027C, YCR099C, YCR100C, YDL017W, YDL018C, YDL038C, YDL039C, YDL045W-A, YDL073W, YDL074C, YDL077C, YDL137W, YDL156W, YDL157C, YDL158C, YDL195W, YDR027C, YDR089W, YDR090C, YDR177W, YDR310C, YDR311W, YDR440W, YDR494W, YEL012W, YER060W, YER183C, YGL095C, YGL144C, YGR215W, YGR220C, YGR268C, YGR270W, YGR283C, YHL002W, YHL003C, YHL047C, YHR005C-A, YHR022C, YHR023W, YHR067W, YHR118C, YHR119W, YHR120W, YIL075C, YJR067C, YJR068W, YJR135C, YJR139C, YLR273C, YLR274W, YLR457C, YLR459W, YMR041C, YMR119W, YMR119W-A, YMR188C, YMR189W, YMR268C, YMR269W, YMR308C, YNL010W, YNL011C, YNL048W, YNL049C, YNL181W, YNL182C, YNL187W, YNL191W, YNL212W, YNL213C, YNL290W, YNL291C, YNR063W, YOL063C, YOL137W, YOL138C, YOL151W, YOR103C, YOR104W, YOR105W, YOR174W, YOR215C, YPL005W, YPL052W, YPL053C, YPL076W, YPL077C, YPR001W, YPR019W, YPR021C, YPR110C, YPR111W

Genes affected by TF deletion 208 genes

YLR278C, YNL079C, YPL239W, YKL122C, YMR016C, YDR220C, YDR222W, YHR146W, YHR148W, YJL115W, YKL043W, YMR220W, YOR033C, YOR004W, YDR397C, YML113W, YFR033C, YKL110C, YLR026C, YOR038C, YPL014W, YJR112W, YLR374C, YMR103C, YMR105C, YOR287C, YOR347C, YGR250C, YLR120C, YLR156W, YML027W, YOR135C, YPL112C, YBR093C, YJL017W, YMR070W, YMR104C, YMR136W, YNL180C, YBL058W, YER029C, YGL106W, YJL148W, YLR121C, YLR183C, YNR029C, YPL109C, YCR021C, YDR074W, YOR261C, YOR263C, YOR267C, YPL247C, YBR169C, YHR127W, YKL113C, YLR033W, YLR438C-A, YOR073W, YOR075W, YPL055C, YCR047C, YER150W, YHL021C, YKR080W, YML120C, YNL090W, YNR066C, YOR264W, YOR202W, YML100W, YBR164C, YDL135C, YFR041C, YHR149C, YJL122W, YJL124C, YLR095C, YLR101C, YOR074C, YOR078W, YOR384W, YDL041W, YLR314C, YMR145C, YNL155W, YOR357C, YPR060C, YGL111W, YGR220C, YKL149C, YLR192C, YML093W, YML064C, YNL309W, YPL118W, YDR505C, YGR012W, YIR035C, YIR010W, YMR081C, YMR144W, YNL124W, YOL149W, YOR294W, YPR025C, YBL028C, YBR264C, YDL201W, YER031C, YER064C, YGR187C, YGR251W, YGR253C, YJL184W, YNL308C, YNR001C, YNL310C, YPL087W, YER127W, YNL099C, YOR273C, YAR028W, YAL025C, YGL055W, YGR138C, YHR196W, YLR074C, YLR414C, YMR236W, YNL289W, YPL068C, YDR019C, YER158C, YKR025W, YLR258W, YLR262C, YPL255W, YAR018C, YDR209C, YGR135W, YGR139W, YGR167W, YLR073C, YMR235C, YMR239C, YNL290W, YDL048C, YGR079W, YOL122C, YOR367W, YDR481C, YGR078C, YLR321C, YLR387C, YNL160W, YOL119C, YOL151W, YOL093W, YOL123W, YCL031C, YPL129W, YBR054W, YIL138C, YLR297W, YNL107W, YOL041C, YHR200W, YJL079C, YOR025W, YOR091W, YDR055W, YDR087C, YGL255W, YLR300W, YMR001C, YMR034C, YMR005W, YMR038C, YNL104C, YOL038W, YPL202C, YBR214W, YEL037C, YGL068W, YGR173W, YHR169W, YKL134C, YLR079W, YLR049C, YLR051C, YMR181C, YMR250W, YNL232W, YOR026W, YOR092W, YDL023C, YDR152W, YCL040W, YIL011W, YML080W, YPL166W, YDL022W, YDR121W, YNL166C, YBR278W, YDR299W, YNR019W

Genes supported by both experiments 3 genes

YGR220C, YNL290W, YOL151W