S.ScerTFYeast transcription factor database Aaron Spivak
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YER184C

No recorded aliases

View at SGD ↗

Function unknown

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.
Fisher’s P-value0.5394
Information content9.482
Max PWM score8.03
Recommended cutoff4.34
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.02 0.01 0.01 0.01 0.01 0.68 
C | 0.17 0.76 0.97 0.01 0.01 0.30 
G | 0.10 0.15 0.01 0.97 0.97 0.01 
T | 0.71 0.08 0.01 0.01 0.01 0.01
Position count matrix (PCM)
A |   2   1   1   1   1  68 
C |  17  76  97   1   1  30 
G |  10  15   1  97  97   1 
T |  71   8   1   1   1   1
Position weight matrix (PWM)
A | -2.77 -3.47 -3.47 -3.47 -3.47  0.75 
C | -0.06  1.44  1.68 -2.89 -2.89  0.51 
G | -0.59 -0.18 -2.89  1.68  1.68 -2.89 
T |  0.80 -1.39 -3.47 -3.47 -3.47 -3.47
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YER184CFoat et. al.P = 1View matrix ↘
Sequence logo for YER184C
Fisher’s P-value1
Information content11.9
Max PWM score13.47
Recommended cutoff10.1
Position frequency matrix (PFM)
A | 0.02 0.12 0.78 0.04 0.21 0.20 0.37 0.08 0.13 0.08 0.87 0.88 0.22 0.01 
C | 0.23 0.03 0.06 0.10 0.01 0.08 0.25 0.19 0.03 0.01 0.01 0.01 0.76 0.37 
G | 0.14 0.54 0.01 0.85 0.01 0.16 0.06 0.01 0.01 0.88 0.11 0.03 0.01 0.07 
T | 0.61 0.31 0.15 0.01 0.77 0.55 0.32 0.73 0.83 0.02 0.01 0.07 0.01 0.55
Position count matrix (PCM)
A |   2  12  78   4  21  20  37   8  13   8  87  88  22   1 
C |  23   3   6  10   1   8  25  19   3   1   1   1  76  37 
G |  14  54   1  85   1  16   6   1   1  88  11   3   1   7 
T |  61  31  15   1  77  55  32  73  83   2   1   7   1  55
Position weight matrix (PWM)
A | -2.77 -0.98  0.89 -2.08 -0.42 -0.47  0.15 -1.39 -0.90 -1.39  1.00  1.01 -0.37 -3.47 
C |  0.25 -1.79 -1.10 -0.59 -2.89 -0.81  0.33  0.05 -1.79 -2.89 -2.89 -2.89  1.44  0.72 
G | -0.25  1.10 -2.89  1.55 -2.89 -0.12 -1.10 -2.89 -2.89  1.59 -0.49 -1.79 -2.89 -0.94 
T |  0.65 -0.03 -0.76 -3.47  0.88  0.54  0.00  0.82  0.95 -2.77 -3.47 -1.52 -3.47  0.54
Foat et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 37 genes

YAL047C, YAR050W, YBL077W, YBL078C, YBR120C, YBR280C, YBR281C, YBR282W, YDR090C, YDR136C, YDR138W, YDR294C, YDR430C, YDR432W, YDR433W, YER142C, YER143W, YGR167W, YIL035C, YIR024C, YIR025W, YKR072C, YLR140W, YLR141W, YLR273C, YLR274W, YNL120C, YNL187W, YNL210W, YNL211C, YNL222W, YNL230C, YOL149W, YOL150C, YOR198C, YOR199W, YOR200W

Genes affected by TF deletion 73 genes

YAL034W-A, YDR207C, YOL048C, YEL011W, YGR125W, YPL014W, YPL016W, YDR342C, YMR103C, YMR105C, YPL283C, YGR248W, YGR250C, YPL112C, YJL017W, YMR104C, YNL116W, YBL024W, YDR309C, YGR211W, YLR183C, YCR021C, YDR074W, YOR267C, YBR169C, YDL072C, YKL051W, YOR043W, YDR011W, YER150W, YER154W, YML120C, YMR023C, YJR148W, YKL219W, YML100W, YBR166C, YFR015C, YFR017C, YMR084W, YDL234C, YER038C, YCR083W, YGR008C, YIR035C, YPL087W, YGR138C, YLR258W, YAR027W, YGR139W, YKL120W, YLR444C, YJL038C, YOR361C, YNL160W, YER067W, YBR054W, YLR297W, YDL124W, YDR055W, YMR001C, YMR034C, YHR135C, YLR452C, YMR181C, YMR250W, YLL026W, YCL040W, YCL042W, YLR178C, YFL068W, YHR045W, YLR327C

Predicted TF–TF partners 15 genes

CST6, DAL82, GIS1, MIG3, MSN4, PDR3, PDR8, PHD1, RGM1, RPH1, RSC3, STP1, SUT1, SUT2, USV1

Explore 15 original interaction plots →