S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

YAP7

YOL028C

View at SGD ↗

Putative basic leucine zipper (bZIP) transcription factor

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Aligned Matrix
Fisher’s P-value1.70e-77
Information content10.99
Max PWM score10.78
Recommended cutoff7.87
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.064 0.403 0.017 0.008 0.972 0.014 0.021 0.802 0.964 0.088 
C | 0.062 0.564 0.010 0.020 0.008 0.767 0.016 0.180 0.008 0.021 
G | 0.661 0.017 0.012 0.229 0.014 0.105 0.009 0.011 0.012 0.229 
T | 0.213 0.017 0.962 0.743 0.008 0.113 0.954 0.007 0.017 0.661
Position count matrix (PCM)
A |   6  40   1   0  97   1   2  80  96   8 
C |   6  56   1   2   0  76   1  18   0   2 
G |  66   1   1  22   1  10   0   1   1  22 
T |  21   1  96  74   0  11  95   0   1  66
Position weight matrix (PWM)
A | -1.61  0.23 -2.94 -3.69  1.11 -3.13 -2.72  0.92  1.10 -1.29 
C | -1.07  1.14 -2.89 -2.20 -3.11  1.45 -2.42  0.00 -3.11 -2.15 
G |  1.30 -2.36 -2.71  0.24 -2.55 -0.54 -3.00 -2.80 -2.71  0.24 
T | -0.41 -2.94  1.10  0.84 -3.69 -1.04  1.09 -3.82 -2.94  0.73
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 11

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

YAP7_AFoat et. al.P = 5.13e-60View matrix ↘
Sequence logo for YAP7_A
Fisher’s P-value5.13e-60
Information content10.29
Max PWM score9.89
Recommended cutoff7.74
Position frequency matrix (PFM)
A | 0.09 0.35 0.01 0.01 0.97 0.01 0.02 0.72 0.94 
C | 0.10 0.59 0.01 0.01 0.01 0.61 0.01 0.27 0.01 
G | 0.67 0.05 0.01 0.47 0.01 0.34 0.01 0.01 0.04 
T | 0.14 0.01 0.97 0.52 0.01 0.04 0.96 0.01 0.01
Position count matrix (PCM)
A |   9  35   1   1  97   1   2  72  94 
C |  10  59   1   1   1  61   1  27   1 
G |  67   5   1  47   1  34   1   1   4 
T |  14   1  97  52   1   4  96   1   1
Position weight matrix (PWM)
A | -1.27  0.09 -3.47 -3.47  1.11 -3.47 -2.77  0.81  1.08 
C | -0.59  1.19 -2.89 -2.89 -2.89  1.22 -2.89  0.41 -2.89 
G |  1.31 -1.28 -2.89  0.96 -2.89  0.64 -2.89 -2.89 -1.50 
T | -0.83 -3.47  1.11  0.49 -3.47 -2.08  1.10 -3.47 -3.47
Foat et. al.
YAP7_BFoat et. al.P = 2.62e-64View matrix ↘
Sequence logo for YAP7_B
Fisher’s P-value2.62e-64
Information content10.21
Max PWM score9.59
Recommended cutoff8
Position frequency matrix (PFM)
A | 0.01 0.01 0.96 0.09 0.01 0.55 0.97 0.01 0.10 
C | 0.04 0.04 0.01 0.45 0.01 0.44 0.01 0.02 0.72 
G | 0.01 0.31 0.01 0.45 0.01 0.01 0.01 0.64 0.08 
T | 0.95 0.65 0.02 0.02 0.97 0.01 0.01 0.33 0.10
Position count matrix (PCM)
A |   1   1  96   9   1  55  97   1  10 
C |   4   4   1  45   1  44   1   2  72 
G |   1  31   1  45   1   1   1  64   8 
T |  95  65   2   2  97   1   1  33  10
Position weight matrix (PWM)
A | -3.47 -3.47  1.10 -1.27 -3.47  0.54  1.11 -3.47 -1.16 
C | -1.50 -1.50 -2.89  0.92 -2.89  0.89 -2.89 -2.20  1.39 
G | -2.89  0.54 -2.89  0.92 -2.89 -2.89 -2.89  1.27 -0.81 
T |  1.09  0.71 -2.77 -2.77  1.11 -3.47 -3.47  0.03 -1.16
Foat et. al.
YAP7_CFoat et. al.P = 0.4849View matrix ↘
Sequence logo for YAP7_C
Fisher’s P-value0.4849
Information content16.91
Max PWM score15.89
Recommended cutoff11.38
Position frequency matrix (PFM)
A | 0.05 0.79 0.94 0.01 0.01 0.82 0.08 0.08 0.01 0.01 0.97 0.01 0.39 0.16 
C | 0.37 0.01 0.02 0.11 0.01 0.16 0.85 0.02 0.07 0.15 0.01 0.27 0.01 0.63 
G | 0.01 0.01 0.01 0.87 0.01 0.01 0.05 0.90 0.01 0.01 0.01 0.72 0.01 0.18 
T | 0.57 0.19 0.03 0.01 0.97 0.01 0.03 0.01 0.91 0.84 0.01 0.01 0.60 0.03
Position count matrix (PCM)
A |   5  79  94   1   1  82   8   8   1   1  97   1  39  16 
C |  37   1   2  11   1  16  85   2   7  15   1  27   1  63 
G |   1   1   1  87   1   1   5  90   1   1   1  72   1  18 
T |  56  19   3   1  97   1   3   1  91  84   1   1  60   3
Position weight matrix (PWM)
A | -1.86  0.90  1.08 -3.47 -3.47  0.94 -1.39 -1.39 -3.47 -3.47  1.11 -3.47  0.20 -0.69 
C |  0.72 -2.89 -2.20 -0.49 -2.89 -0.12  1.55 -2.20 -0.94 -0.18 -2.89  0.41 -2.89  1.25 
G | -2.89 -2.89 -2.89  1.58 -2.89 -2.89 -1.28  1.61 -2.89 -2.89 -2.89  1.39 -2.89  0.00 
T |  0.58 -0.52 -2.37 -3.47  1.11 -3.47 -2.37 -3.47  1.05  0.97 -3.47 -3.47  0.63 -2.37
Foat et. al.
YAP7_AFordyce et. al.P = 0.03338View matrix ↘
Fisher’s P-value0.03338
Information content8.332
Max PWM score8.19
Recommended cutoff5.14
Position frequency matrix (PFM)
A | 0.81 0.49 0.01 0.01 0.96 0.01 0.03 0.23 
C | 0.07 0.06 0.01 0.21 0.02 0.88 0.04 0.12 
G | 0.10 0.05 0.01 0.05 0.01 0.07 0.87 0.06 
T | 0.01 0.40 0.97 0.74 0.01 0.04 0.05 0.59
Position count matrix (PCM)
A |  81  49   1   1  96   1   3  23 
C |   7   6   1  21   2  88   4  12 
G |  10   5   1   5   1   7  87   6 
T |   1  40  97  74   1   4   5  59
Position weight matrix (PWM)
A |  0.93  0.43 -3.47 -3.47  1.10 -3.47 -2.37 -0.33 
C | -0.94 -1.10 -2.89  0.15 -2.20  1.59 -1.50 -0.41 
G | -0.59 -1.28 -2.89 -1.28 -2.89 -0.94  1.58 -1.10 
T | -3.47  0.22  1.11  0.84 -3.47 -2.08 -1.86  0.61
Fordyce et. al.
YAP7_BFordyce et. al.P = 0.0002346View matrix ↘
Fisher’s P-value0.0002346
Information content8.432
Max PWM score8.26
Recommended cutoff5.13
Position frequency matrix (PFM)
A | 0.22 0.80 0.51 0.01 0.01 0.96 0.01 0.03 
C | 0.12 0.07 0.06 0.01 0.21 0.02 0.89 0.01 
G | 0.06 0.10 0.05 0.01 0.05 0.02 0.08 0.88 
T | 0.60 0.02 0.39 0.97 0.74 0.01 0.02 0.07
Position count matrix (PCM)
A |  22  80  51   1   1  96   1   3 
C |  12   7   6   1  21   2  89   1 
G |   6  10   5   1   5   2   8  88 
T |  60   2  39  97  74   1   2   7
Position weight matrix (PWM)
A | -0.37  0.92  0.47 -3.47 -3.47  1.10 -3.47 -2.37 
C | -0.41 -0.94 -1.10 -2.89  0.15 -2.20  1.60 -2.89 
G | -1.10 -0.59 -1.28 -2.89 -1.28 -2.20 -0.81  1.59 
T |  0.63 -2.77  0.20  1.11  0.84 -3.47 -2.77 -1.52
Fordyce et. al.
YAP7_CFordyce et. al.P = 0.03555View matrix ↘
Fisher’s P-value0.03555
Information content8.828
Max PWM score8.55
Recommended cutoff4.3
Position frequency matrix (PFM)
A | 0.08 0.01 0.65 0.07 0.06 0.01 0.62 0.84 
C | 0.01 0.01 0.09 0.80 0.03 0.01 0.01 0.04 
G | 0.01 0.44 0.10 0.10 0.90 0.01 0.37 0.12 
T | 0.91 0.55 0.16 0.03 0.01 0.97 0.01 0.01
Position count matrix (PCM)
A |   8   1  65   7   6   1  62  84 
C |   1   1   9  80   3   1   1   4 
G |   1  44  10  10  90   1  37  12 
T |  91  55  16   3   1  97   1   1
Position weight matrix (PWM)
A | -1.39 -3.47  0.71 -1.52 -1.67 -3.47  0.66  0.97 
C | -2.89 -2.89 -0.69  1.49 -1.79 -2.89 -2.89 -1.50 
G | -2.89  0.89 -0.59 -0.59  1.61 -2.89  0.72 -0.41 
T |  1.05  0.54 -0.69 -2.37 -3.47  1.11 -3.47 -3.47
Fordyce et. al.
YAP7Harbison et. al.P = 9.98e-64View matrix ↘
Sequence logo for YAP7
Fisher’s P-value9.98e-64
Information content7.827
Max PWM score8.11
Recommended cutoff6.42
Position frequency matrix (PFM)
A | 0.516 0.025 0.046 0.929 0.034 0.019 0.728 0.850 0.117 
C | 0.389 0.014 0.020 0.005 0.425 0.016 0.185 0.032 0.074 
G | 0.031 0.019 0.213 0.018 0.478 0.012 0.024 0.035 0.300 
T | 0.064 0.942 0.721 0.048 0.063 0.953 0.063 0.082 0.509
Position count matrix (PCM)
A |  51   2   4  92   3   1  72  85  11 
C |  38   1   2   0  42   1  18   3   7 
G |   3   1  21   1  47   1   2   3  30 
T |   6  94  72   4   6  95   6   8  50
Position weight matrix (PWM)
A |  0.48 -2.55 -1.94  1.07 -2.24 -2.82  0.82  0.98 -1.01 
C |  0.77 -2.55 -2.20 -3.58  0.86 -2.42  0.03 -1.73 -0.89 
G | -1.76 -2.25  0.17 -2.30  0.98 -2.71 -2.01 -1.64  0.51 
T | -1.61  1.08  0.81 -1.90 -1.63  1.09 -1.63 -1.36  0.46
Harbison et. al.
YAP7Macisaac et. alP = 8.08e-70View matrix ↘
Sequence logo for YAP7
Fisher’s P-value8.08e-70
Information content9.293
Max PWM score10.23
Recommended cutoff7.52
Position frequency matrix (PFM)
A | 0.192 0.402 0.067 0.013 0.951 0.054 0.030 0.891 0.950 0.139 
C | 0.113 0.501 0.027 0.024 0.009 0.731 0.042 0.073 0.009 0.021 
G | 0.467 0.051 0.035 0.200 0.031 0.106 0.005 0.032 0.032 0.173 
T | 0.229 0.046 0.871 0.763 0.009 0.109 0.923 0.004 0.009 0.667
Position count matrix (PCM)
A |  19  40   6   1  95   5   3  89  95  13 
C |  11  50   2   2   0  73   4   7   0   2 
G |  46   5   3  20   3  10   0   3   3  17 
T |  22   4  87  76   0  10  92   0   0  66
Position weight matrix (PWM)
A | -0.51  0.23 -1.56 -3.20  1.09 -1.78 -2.37  1.02  1.09 -0.83 
C | -0.47  1.02 -1.90 -2.01 -3.00  1.40 -1.46 -0.90 -3.00 -2.15 
G |  0.95 -1.26 -1.64  0.11 -1.76 -0.53 -3.58 -1.73 -1.73 -0.04 
T | -0.33 -1.94  1.00  0.87 -3.57 -1.08  1.06 -4.38 -3.57  0.73
Macisaac et. al
YAP7_AMorozov et. al.P = 1.23e-58View matrix ↘
Sequence logo for YAP7_A
Fisher’s P-value1.23e-58
Information content10.68
Max PWM score9.41
Recommended cutoff7.63
Position frequency matrix (PFM)
A | 0.449 0.014 0.002 0.962 0.010 0.026 0.814 0.955 0.050 
C | 0.387 0.007 0.004 0.009 0.979 0.042 0.173 0.017 0.074 
G | 0.107 0.014 0.086 0.021 0.001 0.027 0.009 0.022 0.266 
T | 0.058 0.964 0.908 0.008 0.010 0.906 0.003 0.006 0.611
Position count matrix (PCM)
A |  44   1   0  96   1   2  81  95   5 
C |  38   0   0   0  97   4  17   1   7 
G |  10   1   8   2   0   2   0   2  26 
T |   5  96  90   0   1  90   0   0  61
Position weight matrix (PWM)
A |  0.34 -3.13 -5.08  1.10 -3.47 -2.51  0.93  1.09 -1.86 
C |  0.77 -3.25 -3.81 -3.00  1.69 -1.46 -0.04 -2.36 -0.89 
G | -0.52 -2.55 -0.74 -2.15 -5.19 -1.90 -3.00 -2.10  0.39 
T | -1.71  1.10  1.04 -3.69 -3.47  1.04 -4.67 -3.98  0.65
Morozov et. al.
YAP7_BMorozov et. al.P = 4.46e-05View matrix ↘
Sequence logo for YAP7_B
Fisher’s P-value4.46e-05
Information content7.091
Max PWM score9.67
Recommended cutoff7.39
Position frequency matrix (PFM)
A | 0.055 0.049 0.566 0.029 0.111 0.030 0.613 0.533 0.095 0.152 
C | 0.066 0.009 0.279 0.846 0.051 0.072 0.174 0.218 0.504 0.553 
G | 0.093 0.039 0.064 0.022 0.738 0.118 0.036 0.070 0.086 0.162 
T | 0.786 0.903 0.091 0.103 0.101 0.780 0.178 0.179 0.315 0.133
Position count matrix (PCM)
A |   5   4  56   2  11   3  61  53   9  15 
C |   6   0  27  84   5   7  17  21  50  55 
G |   9   3   6   2  73  11   3   7   8  16 
T |  78  90   9  10  10  78  17  17  31  13
Position weight matrix (PWM)
A | -1.76 -1.88  0.57 -2.40 -1.06 -2.37  0.65  0.51 -1.21 -0.74 
C | -1.00 -3.00  0.44  1.55 -1.26 -0.92 -0.03  0.19  1.03  1.12 
G | -0.66 -1.53 -1.03 -2.10  1.41 -0.42 -1.61 -0.94 -0.74 -0.11 
T |  0.90  1.04 -1.26 -1.13 -1.15  0.89 -0.59 -0.58 -0.02 -0.88
Morozov et. al.
YAP7Pachkov et alP = 6.38e-70View matrix ↘
Sequence logo for YAP7
Fisher’s P-value6.38e-70
Information content12.47
Max PWM score11.58
Recommended cutoff7.49
Position frequency matrix (PFM)
A | 0.664 0.018 0.001 0.965 0.117 0.001 0.741 1.000 0.009 0.206 0.586 
C | 0.238 0.001 0.001 0.009 0.109 0.009 0.240 0.001 0.001 0.711 0.100 
G | 0.018 0.001 0.203 0.009 0.774 0.001 0.019 0.001 0.588 0.047 0.205 
T | 0.080 0.982 0.797 0.016 0.001 0.991 0.001 0.001 0.403 0.036 0.109
Position count matrix (PCM)
A |  66   1   0  96  11   0  74 100   0  20  58 
C |  23   0   0   0  10   0  24   0   0  71  10 
G |   1   0  20   0  77   0   1   0  58   4  20 
T |   8  98  79   1   0  99   0   0  40   3  10
Position weight matrix (PWM)
A |  0.73 -2.88 -5.77  1.10 -1.01 -5.77  0.84  1.14 -3.57 -0.44  0.60 
C |  0.28 -5.19 -5.19 -3.00 -0.50 -3.00  0.29 -5.19 -5.19  1.37 -0.59 
G | -2.30 -5.19  0.12 -3.00  1.46 -5.19 -2.25 -5.19  1.18 -1.34  0.13 
T | -1.39  1.12  0.91 -3.00 -5.77  1.13 -5.77 -5.77  0.23 -2.18 -1.08
Pachkov et al
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 18 genes

YBR272C, YDR468C, YDR469W, YER172C, YER173W, YHL009C, YHR001W-A, YJL029C, YLR067C, YLR068W, YLR321C, YMR073C, YMR131C, YMR316C-B, YOL069W, YOL070C, YOL071W, YOR121C

Genes affected by TF deletion 227 genes

YCR012W, YCR040W, YDR432W, YGR282C, YIL148W, YKR012C, YMR046W-A, YOL047C, YOR225W, YFR032C-A, YGL009C, YHR174W, YLR056W, YNL211C, YBR031W, YCR013C, YDR034C-A, YDR063W, YER117W, YGR279C, YIL082W, YKR042W, YKR013W, YNL080C, YOR226C, YAL069W, YDL061C, YJL052W, YJL118W, YOR066W, YPL048W, YOR380W, YOR382W, YDR160W, YFR007W, YHR025W, YIL174W, YIL176C, YIR034C, YJR116W, YJR147W, YLL028W, YLR340W, YLR372W, YLR374C, YMR071C, YNL147W, YNL149C, YOR347C, YOR351C, YPL187W, YAR068W, YBR283C, YGL103W, YGR180C, YHR208W, YHR210C, YNL335W, YNL337W, YPL142C, YBR091C, YBR067C, YDR461W, YGR034W, YJR146W, YJR117W, YLR339C, YNL146W, YPR013C, YNL251C, YBL026W, YCL018W, YBR256C, YDL191W, YDR281C, YGL102C, YGR185C, YIL015W, YML026C, YML086C, YPL145C, YPL147W, YDR378C, YJR094W-A, YLR287C-A, YNL089C, YNL030W, YAL013W, YDL133C-A, YDL136W, YHR123W, YHR188C, YJL121C, YMR230W, YNL279W, YOR045W, YBR009C, YDR077W, YER154W, YGR285C, YHL021C, YIL153W, YNL027W, YNL057W, YOR234C, YAL012W, YBR196C, YKL081W, YOR390W, YER097W, YDR539W, YGR037C, YLR344W, YLR348C, YOL144W, YOL086C, YOR293W, YBL062W, YBL003C, YKL147C, YKL178C, YDR471W, YJL025W, YLL010C, YLR343W, YLR379W, YMR079W, YMR081C, YNL150W, YOL143C, YPL279C, YOR221C, YIL027C, YJL158C, YKL177W, YMR323W, YHR010W, YKR057W, YKR093W, YMR057C, YOL029C, YIL114C, YHR190W, YKL060C, YLR040C, YLR420W, YNL285W, YOR081C, YOR085W, YOR393W, YCL066W, YDR447C, YHR005C-A, YML126C, YOL028C, YOL030W, YOR210W, YHR189W, YKL120W, YLR041W, YLR043C, YFL026W, YHR072W-A, YLR388W, YMR147W, YOL126C, YDR322C-A, YER043C, YGL089C, YGR234W, YBR145W, YFR018C, YLL018C, YNL190W, YNL162W, YOL155C, YPL281C, YJR004C, YKL216W, YKL156W, YLR167W, YNR044W, YNL322C, YDR454C, YGL191W, YHL004W, YLR303W, YMR006C, YOR247W, YAL033W, YER019C-A, YGL031C, YHR136C, YHR141C, YJL141C, YPL076W, YBR053C, YCR028C-A, YIL169C, YLR300W, YLR302C, YNL070W, YNL074C, YNL045W, YOR248W, YDL121C, YGL032C, YGR118W, YJL136C, YLR421C, YMR215W, YFL037W, YJR135W-A, YLR332W, YLR334C, YMR158C-B, YOR369C, YOR375C, YDL184C, YKL164C, YLR180W, YLR390W-A, YOL127W, YBL018C, YER048W-A, YGR209C, YOR182C

Predicted TF–TF partners 1 genes

INO2

Explore 1 original interaction plots →