← All factors / TF RECORD
YAP6
YDR259C, HAL7
Putative basic leucine zipper (bZIP) transcription factor; overexpression increases sodium and lithium tolerance; computational analysis suggests a role in regulation of expression of genes involved in carbohydrate metabolism
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value9.74e-14
Information content8.662
Max PWM score9.9
Recommended cutoff6.04
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.102 0.009 0.889 0.005 0.424 0.035 0.885 0.734 0.323 0.151 C | 0.067 0.020 0.036 0.834 0.031 0.075 0.068 0.052 0.217 0.657 G | 0.086 0.017 0.038 0.020 0.536 0.055 0.022 0.044 0.224 0.074 T | 0.745 0.956 0.037 0.143 0.009 0.834 0.026 0.171 0.236 0.118
Position count matrix (PCM)
A | 10 0 88 0 42 3 88 73 32 15 C | 6 2 3 83 3 7 6 5 21 65 G | 8 1 3 2 53 5 2 4 22 7 T | 74 95 3 14 0 83 2 17 23 11
Position weight matrix (PWM)
A | -1.14 -3.57 1.02 -4.16 0.28 -2.21 1.02 0.83 0.01 -0.75 C | -0.99 -2.20 -1.61 1.53 -1.76 -0.88 -0.97 -1.24 0.19 1.29 G | -0.74 -2.36 -1.56 -2.20 1.09 -1.19 -2.10 -1.41 0.22 -0.89 T | 0.85 1.09 -2.16 -0.81 -3.57 0.96 -2.51 -0.63 -0.30 -1.00
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 8
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
YAP6_AFoat et. al.P = 7.42e-07View matrix ↘
Fisher’s P-value7.42e-07
Information content17.44
Max PWM score14.74
Recommended cutoff8.52
Position frequency matrix (PFM)
A | 0.01 0.69 0.74 0.01 0.11 0.01 0.01 0.97 0.01 0.04 0.51 0.01 0.63 C | 0.01 0.01 0.15 0.01 0.52 0.01 0.01 0.01 0.01 0.94 0.21 0.97 0.01 G | 0.01 0.27 0.10 0.97 0.37 0.01 0.44 0.01 0.97 0.01 0.20 0.01 0.36 T | 0.97 0.03 0.01 0.01 0.01 0.97 0.55 0.01 0.01 0.01 0.08 0.01 0.01
Position count matrix (PCM)
A | 1 69 74 1 11 1 1 97 1 4 51 1 63 C | 1 1 15 1 52 1 1 1 1 94 21 97 1 G | 1 27 10 97 37 1 44 1 97 1 20 1 36 T | 97 3 1 1 1 97 55 1 1 1 8 1 1
Position weight matrix (PWM)
A | -3.47 0.77 0.84 -3.47 -1.07 -3.47 -3.47 1.11 -3.47 -2.08 0.47 -3.47 0.68 C | -2.89 -2.89 -0.18 -2.89 1.06 -2.89 -2.89 -2.89 -2.89 1.65 0.15 1.68 -2.89 G | -2.89 0.41 -0.59 1.68 0.72 -2.89 0.89 -2.89 1.68 -2.89 0.11 -2.89 0.69 T | 1.11 -2.37 -3.47 -3.47 -3.47 1.11 0.54 -3.47 -3.47 -3.47 -1.39 -3.47 -3.47
YAP6_BFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content21.4
Max PWM score23.66
Recommended cutoff17.75
Position frequency matrix (PFM)
A | 0.42 0.79 0.40 0.97 0.01 0.01 0.05 0.23 0.39 0.22 0.11 0.10 0.08 0.83 0.18 0.27 0.01 0.15 0.01 0.02 0.01 0.34 0.31 0.59 C | 0.02 0.01 0.23 0.01 0.01 0.03 0.68 0.01 0.13 0.01 0.84 0.14 0.51 0.01 0.36 0.51 0.11 0.29 0.01 0.01 0.97 0.57 0.03 0.04 G | 0.34 0.20 0.33 0.01 0.01 0.95 0.20 0.62 0.24 0.32 0.03 0.30 0.27 0.15 0.16 0.05 0.87 0.26 0.01 0.01 0.01 0.01 0.01 0.15 T | 0.23 0.01 0.03 0.01 0.97 0.01 0.07 0.15 0.24 0.46 0.02 0.46 0.13 0.01 0.31 0.17 0.01 0.31 0.97 0.96 0.01 0.08 0.65 0.23
Position count matrix (PCM)
A | 42 79 40 97 1 1 5 23 39 22 11 10 8 83 18 27 1 15 1 2 1 34 31 59 C | 2 1 23 1 1 3 68 1 13 1 84 14 51 1 36 51 11 28 1 1 97 56 3 4 G | 34 20 33 1 1 95 20 62 24 32 3 30 27 15 16 5 87 26 1 1 1 1 1 15 T | 23 1 3 1 97 1 7 15 24 46 2 46 13 1 31 17 1 31 97 96 1 8 65 23
Position weight matrix (PWM)
A | 0.27 0.90 0.22 1.11 -3.47 -3.47 -1.86 -0.33 0.20 -0.37 -1.07 -1.16 -1.39 0.95 -0.58 -0.17 -3.47 -0.76 -3.47 -2.77 -3.47 0.06 -0.03 0.61 C | -2.20 -2.89 0.25 -2.89 -2.89 -1.79 1.33 -2.89 -0.33 -2.89 1.54 -0.25 1.04 -2.89 0.69 1.04 -0.49 0.48 -2.89 -2.89 1.68 1.15 -1.79 -1.50 G | 0.64 0.11 0.61 -2.89 -2.89 1.66 0.11 1.24 0.29 0.58 -1.79 0.51 0.41 -0.18 -0.12 -1.28 1.58 0.37 -2.89 -2.89 -2.89 -2.89 -2.89 -0.18 T | -0.33 -3.47 -2.37 -3.47 1.11 -3.47 -1.52 -0.76 -0.29 0.36 -2.77 0.36 -0.90 -3.47 -0.03 -0.63 -3.47 -0.03 1.11 1.10 -3.47 -1.39 0.71 -0.33
YAP6_CFoat et. al.P = 2.35e-06View matrix ↘
Fisher’s P-value2.35e-06
Information content16.2
Max PWM score14.94
Recommended cutoff11.62
Position frequency matrix (PFM)
A | 0.42 0.03 0.97 0.83 0.01 0.16 0.68 0.86 0.85 0.01 0.02 0.01 0.01 C | 0.06 0.01 0.01 0.01 0.04 0.64 0.30 0.07 0.01 0.01 0.01 0.01 0.25 G | 0.52 0.85 0.01 0.01 0.94 0.20 0.01 0.06 0.11 0.97 0.01 0.10 0.01 T | 0.01 0.12 0.01 0.16 0.01 0.01 0.01 0.01 0.03 0.01 0.96 0.88 0.74
Position count matrix (PCM)
A | 42 3 97 83 1 16 68 86 85 1 2 1 1 C | 6 1 1 1 4 64 30 7 1 1 1 1 25 G | 52 85 1 1 94 20 1 6 11 97 1 10 1 T | 1 12 1 16 1 1 1 1 3 1 96 88 74
Position weight matrix (PWM)
A | 0.27 -2.37 1.11 0.95 -3.47 -0.69 0.75 0.99 0.98 -3.47 -2.77 -3.47 -3.47 C | -1.10 -2.89 -2.89 -2.89 -1.50 1.27 0.51 -0.94 -2.89 -2.89 -2.89 -2.89 0.33 G | 1.06 1.55 -2.89 -2.89 1.65 0.11 -2.89 -1.10 -0.49 1.68 -2.89 -0.59 -2.89 T | -3.47 -0.98 -3.47 -0.69 -3.47 -3.47 -3.47 -3.47 -2.37 -3.47 1.10 1.01 0.84
YAP6Harbison et. al.P = 3.30e-05View matrix ↘
Fisher’s P-value3.30e-05
Information content10.48
Max PWM score8.28
Recommended cutoff4.47
Position frequency matrix (PFM)
A | 0.012 0.012 0.964 0.012 0.012 0.964 0.964 C | 0.012 0.012 0.012 0.965 0.012 0.012 0.012 G | 0.012 0.012 0.012 0.012 0.012 0.012 0.012 T | 0.964 0.964 0.012 0.012 0.964 0.012 0.012
Position count matrix (PCM)
A | 1 1 96 1 1 96 96 C | 1 1 1 96 1 1 1 G | 1 1 1 1 1 1 1 T | 96 96 1 1 96 1 1
Position weight matrix (PWM)
A | -3.28 -3.28 1.10 -3.28 -3.28 1.10 1.10 C | -2.71 -2.71 -2.71 1.68 -2.71 -2.71 -2.71 G | -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 T | 1.10 1.10 -3.28 -3.28 1.10 -3.28 -3.28
YAP6Macisaac et. alP = 2.47e-09View matrix ↘
Fisher’s P-value2.47e-09
Information content8.462
Max PWM score7.93
Recommended cutoff7.76
Position frequency matrix (PFM)
A | 0.147 0.001 0.972 0.001 0.660 0.009 0.780 0.606 C | 0.037 0.037 0.001 0.944 0.001 0.028 0.055 0.156 G | 0.156 0.001 0.018 0.009 0.311 0.009 0.046 0.055 T | 0.660 0.961 0.009 0.046 0.028 0.954 0.119 0.183
Position count matrix (PCM)
A | 14 0 97 0 66 0 78 60 C | 3 3 0 94 0 2 5 15 G | 15 0 1 0 31 0 4 5 T | 66 96 0 4 2 95 11 18
Position weight matrix (PWM)
A | -0.78 -5.77 1.11 -5.77 0.72 -3.57 0.89 0.64 C | -1.58 -1.58 -5.19 1.66 -5.19 -1.86 -1.19 -0.14 G | -0.14 -5.19 -2.30 -3.00 0.55 -3.00 -1.36 -1.19 T | 0.72 1.10 -3.57 -1.94 -2.44 1.09 -0.99 -0.56
YAP6Morozov et. al.P = 4.32e-13View matrix ↘
Fisher’s P-value4.32e-13
Information content8.963
Max PWM score10.08
Recommended cutoff6.21
Position frequency matrix (PFM)
A | 0.095 0.010 0.877 0.005 0.390 0.039 0.900 0.752 0.323 0.127 C | 0.071 0.017 0.041 0.818 0.035 0.082 0.070 0.037 0.222 0.725 G | 0.076 0.019 0.040 0.021 0.569 0.062 0.018 0.042 0.230 0.059 T | 0.757 0.955 0.041 0.156 0.006 0.817 0.012 0.169 0.224 0.089
Position count matrix (PCM)
A | 9 1 87 0 39 3 90 75 32 12 C | 7 1 4 81 3 8 7 3 22 72 G | 7 1 4 2 56 6 1 4 23 5 T | 75 95 4 15 0 81 1 16 22 8
Position weight matrix (PWM)
A | -1.21 -3.47 1.01 -4.16 0.20 -2.10 1.03 0.85 0.01 -0.92 C | -0.93 -2.36 -1.48 1.51 -1.64 -0.79 -0.94 -1.58 0.21 1.39 G | -0.86 -2.25 -1.50 -2.15 1.15 -1.07 -2.30 -1.46 0.25 -1.12 T | 0.86 1.09 -2.05 -0.72 -3.98 0.94 -3.28 -0.64 -0.36 -1.28
YAP6Zhu et. al.P = 4.68e-09View matrix ↘
Fisher’s P-value4.68e-09
Information content9.581
Max PWM score13.21
Recommended cutoff6.66
Position frequency matrix (PFM)
A | 0.23 0.13 0.11 0.25 0.04 0.49 0.03 0.03 0.89 0.04 0.17 0.07 0.65 0.83 C | 0.14 0.09 0.43 0.23 0.11 0.41 0.02 0.02 0.03 0.56 0.05 0.09 0.19 0.06 G | 0.59 0.33 0.11 0.07 0.65 0.04 0.06 0.11 0.05 0.10 0.72 0.04 0.06 0.07 T | 0.04 0.44 0.34 0.44 0.20 0.06 0.89 0.84 0.03 0.30 0.06 0.81 0.10 0.03
Position count matrix (PCM)
A | 23 13 11 25 4 49 3 3 89 4 17 7 65 83 C | 14 9 43 23 11 41 2 2 3 56 5 9 19 6 G | 59 33 11 7 65 4 6 11 5 10 72 4 6 7 T | 4 44 34 44 20 6 89 84 3 30 6 81 10 3
Position weight matrix (PWM)
A | -0.33 -0.90 -1.07 -0.25 -2.08 0.43 -2.37 -2.37 1.02 -2.08 -0.63 -1.52 0.71 0.95 C | -0.25 -0.69 0.87 0.25 -0.49 0.82 -2.20 -2.20 -1.79 1.13 -1.28 -0.69 0.05 -1.10 G | 1.19 0.61 -0.49 -0.94 1.28 -1.50 -1.10 -0.49 -1.28 -0.59 1.39 -1.50 -1.10 -0.94 T | -2.08 0.32 0.06 0.32 -0.47 -1.67 1.02 0.97 -2.37 -0.06 -1.67 0.93 -1.16 -2.37
YAP6Zhao and StormoP = 1View matrix ↘
Fisher’s P-value1
Information content0.7224
Max PWM score3.75
Recommended cutoff3.25
Position frequency matrix (PFM)
A | 0.259 0.248 0.293 0.279 0.285 0.265 0.296 0.455 C | 0.216 0.217 0.228 0.224 0.209 0.198 0.207 0.129 G | 0.310 0.299 0.260 0.271 0.282 0.290 0.293 0.296 T | 0.216 0.236 0.219 0.226 0.224 0.247 0.204 0.119
Position count matrix (PCM)
A | 25 24 29 27 28 26 29 45 C | 21 21 22 22 20 19 20 12 G | 31 29 26 27 28 28 29 29 T | 21 23 21 22 22 24 20 11
Position weight matrix (PWM)
A | -0.21 -0.25 -0.09 -0.14 -0.12 -0.19 -0.08 0.35 C | 0.18 0.19 0.24 0.22 0.15 0.10 0.14 -0.33 G | 0.54 0.51 0.37 0.41 0.45 0.48 0.49 0.50 T | -0.39 -0.30 -0.38 -0.35 -0.36 -0.26 -0.45 -0.99
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 167 genes
YAL064W, YBL029W, YBL030C, YBR157C, YBR158W, YDL037C, YDL245C, YDL246C, YDR042C, YDR077W, YDR259C, YDR441C, YDR442W, YDR524C, YDR525W, YEL006W, YEL007W, YEL040W, YEL044W, YEL045C, YEL046C, YEL047C, YEL055C, YEL069C, YEL070W, YER001W, YER007C-A, YER028C, YER045C, YER073W, YER158C, YFL004W, YFL034C-B, YGL005C, YGL135W, YGL136C, YGL158W, YGR035C, YGR060W, YGR108W, YGR190C, YGR192C, YGR221C, YGR234W, YGR238C, YGR249W, YHL034C, YHL041W, YHR047C, YHR049W, YIL012W, YIL013C, YIL015C-A, YIL056W, YIL099W, YIL118W, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YIR013C, YIR014W, YIR017C, YIR018W, YIR019C, YIR020C, YIR021W, YIR022W, YIR023W, YIR034C, YIR035C, YIR038C, YJL048C, YJL105W, YJL148W, YJL191W, YJL192C, YJL216C, YJL217W, YJL219W, YJL221C, YJR094C, YJR094W-A, YJR100C, YJR145C, YJR146W, YJR147W, YJR158W, YJR159W, YKL044W, YKL109W, YKL110C, YKR039W, YKR102W, YLL052C, YLL053C, YLR028C, YLR074C, YLR075W, YLR081W, YLR105C, YLR121C, YLR294C, YLR295C, YLR296W, YLR304C, YLR354C, YLR367W, YLR368W, YLR413W, YML116W, YML131W, YMR014W, YMR017W, YMR082C, YMR125W, YMR135C, YMR136W, YMR319C, YMR320W, YNL066W, YNL087W, YNL145W, YNL178W, YNL179C, YNL180C, YNL337W, YNL338W, YNL339C, YNR050C, YNR067C, YOL121C, YOL151W, YOL154W, YOL155C, YOL156W, YOL157C, YOL158C, YOR028C, YOR029W, YOR032C, YOR042W, YOR049C, YOR153W, YOR167C, YOR168W, YOR170W, YOR178C, YOR179C, YOR180C, YOR181W, YOR223W, YOR236W, YOR272W, YOR277C, YOR278W, YOR315W, YOR369C, YOR381W, YPL143W, YPL198W, YPR013C, YPR065W, YPR148C, YPR149W, YPR192W
Genes affected by TF deletion 22 genes
YMR192W, YBL097W, YFL013W-A, YGL075C, YKL139W, YBR093C, YDR281C, YHR127W, YOR043W, YJR148W, YFL051C, YOR141C, YDL233W, YER159C, YBR144C, YPL130W, YGR016W, YGL191W, YKR101W, YDR061W, YMR034C, YDR485C