← All factors / TF RECORD
TBF1
YPL128C, LPI16
Telobox-containing general regulatory factor; binds to TTAGGG repeats within subtelomeric anti-silencing regions (STARs) and possibly throughout the genome and mediates their insulating capacity by blocking silent chromatin propagation
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content12.27
Max PWM score10.03
Recommended cutoff7.53
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.95 0.70 0.03 0.01 0.01 0.01 0.96 0.83 C | 0.01 0.01 0.95 0.97 0.97 0.02 0.01 0.01 G | 0.01 0.29 0.01 0.01 0.01 0.01 0.02 0.06 T | 0.03 0.01 0.01 0.01 0.01 0.96 0.01 0.10
Position count matrix (PCM)
A | 95 70 3 1 1 1 96 83 C | 1 1 95 97 97 2 1 1 G | 1 28 1 1 1 1 2 6 T | 3 1 1 1 1 96 1 10
Position weight matrix (PWM)
A | 1.09 0.78 -2.37 -3.47 -3.47 -3.47 1.10 0.95 C | -2.89 -2.89 1.66 1.68 1.68 -2.20 -2.89 -2.89 G | -2.89 0.48 -2.89 -2.89 -2.89 -2.89 -2.20 -1.10 T | -2.37 -3.47 -3.47 -3.47 -3.47 1.10 -3.47 -1.16
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
TBF1Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content8.665
Max PWM score8.17
Recommended cutoff6.13
Position frequency matrix (PFM)
A | 0.61 0.46 0.15 0.01 0.01 0.01 0.76 C | 0.11 0.11 0.83 0.97 0.97 0.01 0.08 G | 0.12 0.35 0.01 0.01 0.01 0.01 0.11 T | 0.16 0.08 0.01 0.01 0.01 0.97 0.05
Position count matrix (PCM)
A | 61 46 15 1 1 1 76 C | 11 11 83 97 97 1 8 G | 12 35 1 1 1 1 11 T | 16 8 1 1 1 97 5
Position weight matrix (PWM)
A | 0.65 0.36 -0.76 -3.47 -3.47 -3.47 0.86 C | -0.49 -0.49 1.53 1.68 1.68 -2.89 -0.81 G | -0.41 0.66 -2.89 -2.89 -2.89 -2.89 -0.49 T | -0.69 -1.39 -3.47 -3.47 -3.47 1.11 -1.86
TBF1Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content8.464
Max PWM score7.97
Recommended cutoff5.98
Position frequency matrix (PFM)
A | 0.625 0.503 0.115 0.003 0.004 0.008 0.599 C | 0.073 0.076 0.826 0.995 0.994 0.083 0.134 G | 0.098 0.365 0.017 0.001 0.001 0.025 0.182 T | 0.204 0.056 0.041 0.001 0.001 0.884 0.084
Position count matrix (PCM)
A | 62 50 11 0 0 0 59 C | 7 7 82 99 99 8 13 G | 9 36 1 0 0 2 18 T | 20 5 4 0 0 88 8
Position weight matrix (PWM)
A | 0.67 0.45 -1.02 -4.67 -4.38 -3.69 0.63 C | -0.90 -0.86 1.52 1.71 1.71 -0.77 -0.30 G | -0.61 0.71 -2.36 -5.19 -5.19 -1.97 0.01 T | -0.45 -1.74 -2.05 -5.77 -5.77 1.02 -1.34
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 1 genes
TYE7