SWI5
YDR146C
Transcription factor that activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; localization to the nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.08 0.01 0.01 0.01 0.01 0.01 0.04 C | 0.08 0.01 0.97 0.01 0.01 0.01 0.04 G | 0.23 0.97 0.01 0.01 0.97 0.97 0.27 T | 0.61 0.01 0.01 0.97 0.01 0.01 0.65
A | 8 1 1 1 1 1 4 C | 8 1 97 1 1 1 4 G | 23 97 1 1 97 97 27 T | 61 1 1 97 1 1 65
A | -1.39 -3.47 -3.47 -3.47 -3.47 -3.47 -2.08 C | -0.81 -2.89 1.68 -2.89 -2.89 -2.89 -1.50 G | 0.25 1.68 -2.89 -2.89 1.68 1.68 0.41 T | 0.65 -3.47 -3.47 1.11 -3.47 -3.47 0.71
Alternative candidate matrices 5
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
SWI5Foat et. al.P = 1.01e-14View matrix ↘
A | 0.50 0.02 0.15 0.01 0.34 0.01 0.27 0.01 0.97 0.01 0.43 0.03 0.11 C | 0.28 0.96 0.83 0.97 0.01 0.97 0.02 0.79 0.01 0.42 0.03 0.95 0.01 G | 0.21 0.01 0.02 0.01 0.64 0.01 0.01 0.01 0.01 0.02 0.37 0.01 0.22 T | 0.01 0.02 0.01 0.01 0.01 0.01 0.71 0.19 0.01 0.55 0.16 0.01 0.65
A | 50 2 15 1 34 1 27 1 97 1 43 3 11 C | 28 96 83 97 1 97 2 79 1 42 3 95 1 G | 21 1 2 1 64 1 1 1 1 2 37 1 22 T | 1 2 1 1 1 1 71 19 1 55 16 1 65
A | 0.45 -2.77 -0.76 -3.47 0.06 -3.47 -0.17 -3.47 1.11 -3.47 0.30 -2.37 -1.07 C | 0.44 1.67 1.53 1.68 -2.89 1.68 -2.20 1.48 -2.89 0.85 -1.79 1.66 -2.89 G | 0.15 -2.89 -2.20 -2.89 1.27 -2.89 -2.89 -2.89 -2.89 -2.20 0.72 -2.89 0.20 T | -3.47 -2.77 -3.47 -3.47 -3.47 -3.47 0.80 -0.52 -3.47 0.54 -0.69 -3.47 0.71
SWI5Harbison et. al.P = 1.53e-07View matrix ↘
A | 0.012 0.012 0.012 0.012 0.012 0.488 C | 0.012 0.012 0.964 0.012 0.012 0.012 G | 0.488 0.964 0.012 0.012 0.964 0.488 T | 0.488 0.012 0.012 0.965 0.012 0.012
A | 1 1 1 1 1 48 C | 1 1 96 1 1 1 G | 48 96 1 1 96 48 T | 48 1 1 96 1 1
A | -3.28 -3.28 -3.28 -3.28 -3.28 0.42 C | -2.71 -2.71 1.68 -2.71 -2.71 -2.71 G | 1.00 1.68 -2.71 -2.71 1.68 1.00 T | 0.42 -3.28 -3.28 1.10 -3.28 -3.28
SWI5Macisaac et. alP = 2.44e-09View matrix ↘
A | 0.072 0.099 0.005 0.017 0.052 0.183 0.206 0.175 C | 0.148 0.055 0.856 0.049 0.031 0.087 0.197 0.164 G | 0.163 0.834 0.001 0.066 0.854 0.619 0.116 0.164 T | 0.617 0.012 0.138 0.868 0.063 0.111 0.481 0.498
A | 7 9 0 1 5 18 20 17 C | 14 5 85 4 3 8 19 16 G | 16 83 0 6 85 61 11 16 T | 61 1 13 86 6 11 48 49
A | -1.49 -1.17 -4.16 -2.94 -1.82 -0.56 -0.44 -0.60 C | -0.20 -1.19 1.56 -1.30 -1.76 -0.73 0.09 -0.09 G | -0.10 1.53 -5.19 -1.00 1.56 1.24 -0.44 -0.09 T | 0.66 -3.28 -0.84 1.00 -1.63 -1.06 0.41 0.44
SWI5Pachkov et alP = 7.52e-08View matrix ↘
A | 0.144 0.001 0.001 0.001 0.004 0.230 C | 0.091 0.008 0.958 0.001 0.001 0.001 G | 0.429 0.991 0.001 0.003 0.996 0.770 T | 0.336 0.001 0.042 0.997 0.001 0.001
A | 14 0 0 0 0 23 C | 9 0 95 0 0 0 G | 42 99 0 0 99 77 T | 33 0 4 99 0 0
A | -0.80 -5.77 -5.77 -5.77 -4.38 -0.33 C | -0.68 -3.11 1.67 -5.19 -5.19 -5.19 G | 0.87 1.71 -5.19 -4.09 1.71 1.45 T | 0.05 -5.77 -2.03 1.14 -5.77 -5.77
SWI5Zhu J and MQ ZhangP = 1View matrix ↘
A | 0.45 0.09 0.45 0.18 0.18 0.45 0.09 0.09 0.09 0.09 0.09 0.27 C | 0.18 0.27 0.18 0.18 0.36 0.27 0.09 0.09 0.73 0.09 0.09 0.09 G | 0.27 0.27 0.09 0.27 0.18 0.09 0.27 0.73 0.09 0.09 0.73 0.55 T | 0.09 0.36 0.27 0.36 0.27 0.18 0.55 0.09 0.09 0.73 0.09 0.09
A | 45 9 45 18 18 45 9 9 9 9 9 27 C | 18 27 18 18 36 27 9 9 73 9 9 9 G | 27 27 9 27 18 9 27 73 9 9 73 55 T | 9 36 27 36 27 18 55 9 9 73 9 9
A | 0.34 -1.27 0.34 -0.58 -0.58 0.34 -1.27 -1.27 -1.27 -1.27 -1.27 -0.17 C | 0.00 0.41 0.00 0.00 0.69 0.41 -0.69 -0.69 1.40 -0.69 -0.69 -0.69 G | 0.41 0.41 -0.69 0.41 0.00 -0.69 0.41 1.40 -0.69 -0.69 1.40 1.12 T | -1.27 0.12 -0.17 0.12 -0.17 -0.58 0.54 -1.27 -1.27 0.82 -1.27 -1.27
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 201 genes
YAL017W, YAL018C, YAL022C, YAR009C, YBL048W, YBL049W, YBL069W, YBL071C, YBL108W, YBR040W, YBR058C-A, YBR059C, YBR070C, YBR071W, YBR083W, YBR097W, YBR157C, YBR158W, YBR190W, YBR191W, YBR230C, YDL030W, YDL032W, YDL035C, YDL112W, YDL113C, YDL114W, YDL115C, YDL117W, YDL119C, YDL127W, YDL173W, YDL174C, YDL179W, YDL223C, YDL224C, YDL225W, YDL226C, YDR054C, YDR055W, YDR112W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR164C, YDR165W, YDR210W-D, YDR212W, YDR345C, YDR397C, YDR398W, YDR418W, YDR543C, YEL069C, YEL073C, YEL076W-C, YEL077C, YER064C, YER078C, YER079W, YER138C, YER177W, YER189W, YER190W, YFL013W-A, YFL021W, YFL022C, YFL063W, YFL064C, YFL065C, YFR017C, YFR031C-A, YGL028C, YGL108C, YGL139W, YGL140C, YGL210W, YGL226C-A, YGL226W, YGL227W, YGR038C-B, YGR041W, YGR060W, YGR086C, YGR189C, YGR234W, YGR254W, YGR296W, YHL012W, YHL013C, YHR033W, YHR091C, YHR138C, YHR190W, YIL009W, YIL018W, YIL050W, YIL051C, YIL128W, YIL129C, YIL173W, YIL176C, YIR004W, YJL078C, YJL080C, YJL148W, YJL159W, YJL160C, YJL188C, YJL207C, YJL217W, YJL225C, YJR044C, YJR148W, YKL044W, YKL163W, YKL164C, YKL185W, YKL186C, YLL063C, YLR011W, YLR012C, YLR013W, YLR035C-A, YLR049C, YLR078C, YLR079W, YLR105C, YLR194C, YLR207W, YLR276C, YLR286C, YLR287C-A, YLR300W, YLR346C, YLR397C, YLR406C, YLR407W, YLR439W, YLR440C, YML100W, YML101C, YML102C-A, YML111W, YML125C, YML131W, YMR014W, YMR135W-A, YMR149W, YMR165C, YMR172C-A, YMR173W, YMR173W-A, YMR242C, YMR251W-A, YMR252C, YMR261C, YMR262W, YNL032W, YNL034W, YNL078W, YNL079C, YNL112W, YNL114C, YNL141W, YNL145W, YNL192W, YNL238W, YNL241C, YNL269W, YNL271C, YNL324W, YNL326C, YNL327W, YNL328C, YNL335W, YNL336W, YNL337W, YNR018W, YOR138C, YOR140W, YOR236W, YOR264W, YOR273C, YOR274W, YOR348C, YOR349W, YPL024W, YPL025C, YPL050C, YPL157W, YPL158C, YPL195W, YPL198W, YPL251W, YPL253C, YPL283C, YPR183W, YPR185W
Genes affected by TF deletion 126 genes
YCR040W, YGR278W, YHL014C, YGR282C, YJR020W, YOR225W, YDL098C, YDL131W, YDR192C, YFR032C-A, YGL009C, YBR031W, YCR013C, YGR279C, YKR042W, YKR013W, YMR044W, YOR226C, YCR097W-A, YHR142W, YHR143W-A, YJL052W, YPR083W, YDL033C, YGR031W, YHR025W, YMR071C, YNL149C, YOR351C, YPL187W, YHR208W, YBR067C, YDR461W, YFR006W, YHR021C, YJR146W, YJR117W, YNL146W, YCL018W, YDL191W, YIL015W, YLR185W, YML055W, YJL131C, YLR287C-A, YDL133C-A, YDL136W, YMR230W, YOR045W, YBR011C, YER154W, YJR148W, YDL075W, YER001W, YEL021W, YKL081W, YDR502C, YOL144W, YBL062W, YGR192C, YKL209C, YKL178C, YLR343W, YLR349W, YNL150W, YOL143C, YCL027W, YIL027C, YKL177W, YOR170W, YHR010W, YKR093W, YLR291C, YLR262C-A, YLR234W, YOR239W, YGR140W, YLR040C, YLR420W, YCL066W, YDR447C, YHR005C-A, YIL163C, YOR210W, YKL120W, YLR041W, YCR097W, YFL026W, YHR072W-A, YKL032C, YLR388W, YOL126C, YGL089C, YBR145W, YGR044C, YNL162W, YPL281C, YJR004C, YKL216W, YNR044W, YGL225W, YLR303W, YOR247W, YER019C-A, YHR141C, YGL224C, YLR302C, YNL070W, YOR248W, YDL243C, YAR031W, YGL032C, YBR118W, YJR135W-A, YDL184C, YJR009C, YDL179W, YDL211C, YER073W, YGL098W, YML107C, YML081C-A, YOR182C, YPR190C, YPR176C, YPR180W
Genes supported by both experiments 3 genes
YDL179W, YJR148W, YLR287C-A