SWI4
YER111C, ART1
DNA binding component of the SBF complex (Swi4p-Swi6p), a transcriptional activator that in concert with MBF (Mbp1-Swi6p) regulates late G1-specific transcription of targets including cyclins and genes required for DNA synthesis and repair
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.504 0.047 0.351 0.039 0.041 0.864 0.975 0.965 0.437 C | 0.181 0.922 0.001 0.907 0.067 0.001 0.001 0.018 0.113 G | 0.136 0.025 0.643 0.016 0.860 0.092 0.023 0.002 0.178 T | 0.179 0.006 0.005 0.038 0.032 0.043 0.001 0.015 0.272
A | 50 4 35 3 4 86 97 96 43 C | 18 92 0 90 6 0 0 1 11 G | 13 2 64 1 86 9 2 0 17 T | 17 0 0 3 3 4 0 1 27
A | 0.45 -1.92 0.09 -2.10 -2.05 0.99 1.11 1.10 0.31 C | 0.01 1.63 -5.19 1.62 -0.99 -5.19 -5.19 -2.30 -0.47 G | -0.28 -1.97 1.27 -2.42 1.56 -0.67 -2.06 -4.50 -0.01 T | -0.58 -3.98 -4.16 -2.13 -2.30 -2.01 -5.77 -3.06 -0.16
Alternative candidate matrices 4
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
SWI4Badis et. al.P = 1.78e-31View matrix ↘
A | 0.62 0.01 0.15 0.01 0.01 0.97 0.94 0.61 C | 0.08 0.97 0.01 0.97 0.01 0.01 0.02 0.08 G | 0.15 0.01 0.83 0.01 0.97 0.01 0.02 0.08 T | 0.15 0.01 0.01 0.01 0.01 0.01 0.02 0.23
A | 62 1 15 1 1 97 94 61 C | 8 97 1 97 1 1 2 8 G | 15 1 83 1 97 1 2 8 T | 15 1 1 1 1 1 2 23
A | 0.66 -3.47 -0.76 -3.47 -3.47 1.11 1.08 0.65 C | -0.81 1.68 -2.89 1.68 -2.89 -2.89 -2.20 -0.81 G | -0.18 -2.89 1.53 -2.89 1.68 -2.89 -2.20 -0.81 T | -0.76 -3.47 -3.47 -3.47 -3.47 -3.47 -2.77 -0.33
SWI4Foat et. al.P = 2.93e-31View matrix ↘
A | 0.29 0.42 0.01 0.19 0.01 0.01 0.71 0.73 0.58 C | 0.08 0.12 0.91 0.01 0.97 0.13 0.01 0.16 0.04 G | 0.50 0.26 0.02 0.80 0.01 0.85 0.13 0.01 0.15 T | 0.14 0.19 0.07 0.01 0.01 0.01 0.14 0.11 0.22
A | 28 42 1 19 1 1 71 73 57 C | 8 12 91 1 97 13 1 16 4 G | 50 26 2 80 1 85 13 1 15 T | 14 19 7 1 1 1 14 11 22
A | -0.10 0.27 -3.47 -0.52 -3.47 -3.47 0.80 0.82 0.59 C | -0.81 -0.41 1.62 -2.89 1.68 -0.33 -2.89 -0.12 -1.50 G | 1.02 0.37 -2.20 1.49 -2.89 1.55 -0.33 -2.89 -0.18 T | -0.83 -0.52 -1.52 -3.47 -3.47 -3.47 -0.83 -1.07 -0.37
SWI4Harbison et. al.P = 7.20e-33View matrix ↘
A | 0.447 0.595 0.023 0.196 0.024 0.036 0.926 0.936 0.836 C | 0.055 0.126 0.951 0.015 0.955 0.223 0.011 0.026 0.038 G | 0.354 0.093 0.012 0.766 0.016 0.722 0.011 0.023 0.047 T | 0.143 0.186 0.014 0.023 0.006 0.019 0.051 0.015 0.080
A | 44 59 2 19 2 3 92 93 83 C | 5 12 95 1 95 22 1 2 3 G | 35 9 1 76 1 72 1 2 4 T | 14 18 1 2 0 1 5 1 8
A | 0.33 0.62 -2.63 -0.49 -2.59 -2.18 1.06 1.07 0.96 C | -1.19 -0.36 1.66 -2.48 1.67 0.21 -2.80 -1.93 -1.56 G | 0.68 -0.66 -2.71 1.45 -2.42 1.39 -2.80 -2.06 -1.34 T | -0.81 -0.54 -3.13 -2.63 -3.98 -2.82 -1.84 -3.06 -1.39
SWI4Pachkov et alP = 3.71e-35View matrix ↘
A | 0.435 0.505 0.003 0.379 0.001 0.017 0.928 0.979 0.951 0.671 C | 0.052 0.203 0.941 0.017 0.994 0.215 0.006 0.006 0.009 0.096 G | 0.356 0.092 0.016 0.602 0.001 0.768 0.013 0.010 0.004 0.021 T | 0.157 0.200 0.040 0.002 0.006 0.001 0.053 0.005 0.036 0.212
A | 43 50 0 37 0 1 92 97 95 67 C | 5 20 94 1 99 21 0 0 0 9 G | 35 9 1 60 0 76 1 1 0 2 T | 15 20 4 0 0 0 5 0 3 21
A | 0.31 0.46 -4.67 0.17 -5.77 -2.94 1.06 1.12 1.09 0.74 C | -1.24 0.12 1.65 -2.36 1.71 0.18 -3.40 -3.40 -3.00 -0.63 G | 0.68 -0.67 -2.42 1.21 -5.19 1.45 -2.63 -2.89 -3.81 -2.15 T | -0.71 -0.47 -2.08 -5.08 -3.98 -5.77 -1.80 -4.16 -2.18 -0.41
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 252 genes
YBL002W, YBL003C, YBL023C, YBL029W, YBR069C, YBR070C, YBR071W, YBR077C, YBR078W, YBR079C, YBR112C, YBR114W, YBR158W, YBR161W, YBR162C, YBR162W-A, YCR061W, YCR062W, YCR064C, YCR065W, YCR073C, YDL003W, YDL047W, YDL055C, YDL126C, YDL127W, YDL185W, YDL187C, YDL211C, YDL227C, YDR010C, YDR011W, YDR072C, YDR073W, YDR133C, YDR134C, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR224C, YDR225W, YDR227W, YDR261C, YDR309C, YDR345C, YDR441C, YDR442W, YDR451C, YDR452W, YDR453C, YDR500C, YDR501W, YDR507C, YDR508C, YDR509W, YDR510W, YDR513W, YDR524C, YDR525W, YDR526C, YEL007W, YEL017C-A, YEL017W, YEL040W, YER001W, YER011W, YER070W, YER078C, YER079W, YER111C, YER112W, YER145C, YER146W, YER177W, YFR017C, YGL038C, YGL096W, YGL147C, YGL179C, YGL227W, YGL253W, YGR013W, YGR014W, YGR041W, YGR050C, YGR060W, YGR086C, YGR109C, YGR109W-A, YGR109W-B, YGR110W, YGR140W, YGR151C, YGR152C, YGR153W, YGR189C, YGR190C, YGR193C, YGR221C, YGR234W, YGR249W, YGR279C, YHL012W, YHL013C, YHR061C, YHR063C, YHR149C, YHR150W, YHR193C, YHR194W, YHR205W, YIL012W, YIL013C, YIL056W, YIL121W, YIL122W, YIL123W, YIR020C, YJL158C, YJL184W, YJL185C, YJL186W, YJL187C, YJL194W, YJL196C, YJR044C, YJR047C, YJR048W, YJR054W, YJR145C, YJR146W, YJR147W, YJR148W, YKL007W, YKL008C, YKL044W, YKL094W, YKL096W, YKL096W-A, YKL097C, YKL103C, YKL109W, YKL110C, YKL180W, YKR011C, YKR013W, YKR040C, YKR042W, YKR093W, YLL012W, YLL013C, YLR044C, YLR055C, YLR056W, YLR084C, YLR121C, YLR139C, YLR142W, YLR255C, YLR256W, YLR256W-A, YLR300W, YLR332W, YLR342W, YLR437C, YLR438W, YLR439W, YML007W, YML008C, YML026C, YML027W, YML052W, YML053C, YML100W, YML101C, YML102C-A, YMR006C, YMR007W, YMR016C, YMR017W, YMR037C, YMR070W, YMR135C, YMR136W, YMR144W, YMR145C, YMR179W, YMR195W, YMR199W, YMR261C, YMR262W, YMR279C, YMR304C-A, YMR305C, YMR306C-A, YMR306W, YMR307W, YMR308C, YNL178W, YNL231C, YNL289W, YNL295W, YNL297C, YNL298W, YNL300W, YNL301C, YNR016C, YNR017W, YNR018W, YNR044W, YOL011W, YOL012C, YOL019W, YOL113W, YOL114C, YOL154W, YOR138C, YOR140W, YOR178C, YOR246C, YOR247W, YOR248W, YOR315W, YOR344C, YOR372C, YOR373W, YOR378W, YPL016W, YPL017C, YPL024W, YPL025C, YPL056C, YPL081W, YPL082C, YPL124W, YPL126W, YPL127C, YPL163C, YPL177C, YPL230W, YPL267W, YPR009W, YPR013C, YPR035W, YPR119W, YPR120C, YPR149W, YPR158C-C, YPR158C-D, YPR159W
Genes affected by TF deletion 252 genes
YBR004C, YBR006W, YER145C, YHL048W, YKR012C, YMR041C, YNL016W, YOL047C, YEL075C, YHR146W, YLR463C, YLR465C, YLR467W, YPL015C, YBR005W, YCL049C, YHL015W, YKR042W, YKR013W, YMR009W, YOL011W, YMR266W, YDL063C, YDL127W, YEL076C, YGR120C, YJL048C, YJL116C, YLR089C, YLR059C, YLR462W, YLR464W, YLR405W, YLR466W, YMR191W, YNL274C, YOR038C, YPL014W, YPL016W, YBR092C, YGR001C, YGR033C, YLL066C, YMR103C, YNL115C, YOR285W, YBR287W, YDR280W, YER053C, YGL071W, YGR248W, YGR250C, YML027W, YNL333W, YNR028W, YBR067C, YMR104C, YNL116W, YBL024W, YDR309C, YDR281C, YER029C, YGL076C, YGR213C, YIL051C, YJL144W, YLR121C, YMR251W-A, YMR315W, YNL300W, YNL332W, YNL336W, YPL111W, YPL081W, YBR010W, YBR012C, YCR050C, YLR252W, YMR020W, YNL030W, YBR169C, YGL053W, YKL051W, YMR228W, YOR009W, YOR043W, YOR385W, YBR009C, YCL064C, YER150W, YHL049C, YIL117C, YJR025C, YMR023C, YML100W, YDR225W, YER001W, YGR131W, YMR199W, YNL248C, YOR390W, YBR070C, YFR017C, YLR348C, YMR084W, YMR145C, YOL144W, YOR355W, YBR265W, YDL234C, YER038C, YJL159W, YKL149C, YPL088W, YPL122C, YGR008C, YIR035C, YIR010W, YJR156C, YLL067C, YLR349W, YOL143C, YOR354C, YBL032W, YCL025C, YBR296C, YDL201W, YDR346C, YER064C, YJL158C, YNR001C, YNR038W, YPL087W, YER189W, YJR070C, YKR061W, YKR093W, YML133C, YOL058W, YPL256C, YAR028W, YGR138C, YGR142W, YLR040C, YLR420W, YNL289W, YDR081C, YER158C, YER188W, YER190W, YGR295C, YKR056W, YLR258W, YML132W, YNL096C, YNL066W, YNR072W, YOL032W, YMR008C, YAR027W, YGR108W, YGR139W, YGR110W, YLR041W, YNL256W, YPL030W, YPL032C, YPL063W, YFL059W, YGR019W, YGR079W, YIR044C, YLR356W, YMR120C, YNL197C, YCL038C, YGR234W, YLR142W, YML070W, YDR174W, YFR022W, YIR043C, YLR355C, YMR146C, YNL126W, YNL160W, YNL192W, YBR302C, YHR218W, YJL225C, YJL196C, YKL216W, YLR197W, YNR009W, YNR044W, YPL163C, YBR054W, YBL111C, YBR028C, YLR297W, YLR299W, YMR006C, YNL075W, YOR247W, YAR033W, YAL062W, YDL124W, YJL079C, YKL103C, YLR050C, YLR054C, YLR455W, YCR007C, YDR055W, YGL255W, YLR300W, YMR001C, YMR062C, YMR034C, YMR007W, YOL007C, YOR248W, YPL198W, YGR149W, YHR135C, YKL096W-A, YLR452C, YMR250W, YFR028C, YLR366W, YMR093W, YCL040W, YCL042W, YGL101W, YLR178C, YML052W, YFL062W, YFL064C, YFL068W, YHR104W, YHR108W, YLR327C, YLR359W, YOL097C, YOR338W, YPR041W, YDR303C, YJL172W, YKL163W, YMR277W, YNR019W, YNR052C
Genes supported by both experiments 35 genes
YBR070C, YDL127W, YDR225W, YDR309C, YER001W, YER145C, YFR017C, YGR110W, YGR234W, YJL158C, YJL196C, YKL096W-A, YKL103C, YKR013W, YKR042W, YKR093W, YLR121C, YLR142W, YLR300W, YML027W, YML052W, YML100W, YMR006C, YMR007W, YMR145C, YMR199W, YNL289W, YNL300W, YNR044W, YOL011W, YOR247W, YOR248W, YPL016W, YPL081W, YPL163C
Predicted TF–TF partners 14 genes
ABF1, FKH1, FKH2, MBP1, MET28, RDS1, REB1, RTG3, SKN7, STB1, STB2, STB3, SUT1, SWI6