← All factors / TF RECORD
STP4
YDL048C
Protein containing a Kruppel-type zinc-finger domain; has similarity to Stp1p, Stp2p, and Stp3p
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.0001612
Information content11.47
Max PWM score10.25
Recommended cutoff5.42
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.19 0.40 0.01 0.97 0.01 0.01 0.01 0.01 C | 0.11 0.29 0.01 0.01 0.01 0.97 0.01 0.72 G | 0.55 0.24 0.01 0.01 0.97 0.01 0.97 0.17 T | 0.15 0.07 0.97 0.01 0.01 0.01 0.01 0.10
Position count matrix (PCM)
A | 19 40 1 97 1 1 1 1 C | 11 28 1 1 1 97 1 72 G | 55 24 1 1 97 1 97 17 T | 15 7 97 1 1 1 1 10
Position weight matrix (PWM)
A | -0.52 0.22 -3.47 1.11 -3.47 -3.47 -3.47 -3.47 C | -0.49 0.48 -2.89 -2.89 -2.89 1.68 -2.89 1.39 G | 1.12 0.29 -2.89 -2.89 1.68 -2.89 1.68 -0.06 T | -0.76 -1.52 1.11 -3.47 -3.47 -3.47 -3.47 -1.16
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 4
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
STP4Foat et. al.P = 0.009335View matrix ↘
Fisher’s P-value0.009335
Information content19.62
Max PWM score21.11
Recommended cutoff11.19
Position frequency matrix (PFM)
A | 0.10 0.22 0.04 0.01 0.01 0.17 0.07 0.14 0.45 0.42 0.12 0.19 0.01 0.29 0.01 0.01 0.01 0.55 0.46 0.17 C | 0.02 0.57 0.01 0.01 0.01 0.01 0.34 0.49 0.01 0.53 0.14 0.43 0.09 0.05 0.45 0.01 0.01 0.41 0.01 0.38 G | 0.01 0.02 0.40 0.97 0.97 0.01 0.42 0.15 0.01 0.04 0.73 0.01 0.20 0.43 0.54 0.97 0.02 0.01 0.42 0.45 T | 0.87 0.20 0.55 0.01 0.01 0.81 0.17 0.23 0.54 0.01 0.01 0.37 0.71 0.22 0.01 0.01 0.97 0.04 0.12 0.01
Position count matrix (PCM)
A | 10 22 4 1 1 17 7 14 45 42 12 19 1 28 1 1 1 55 46 17 C | 2 56 1 1 1 1 34 49 1 53 14 43 9 5 45 1 1 41 1 38 G | 1 2 40 97 97 1 42 15 1 4 73 1 20 43 54 97 2 1 42 45 T | 87 20 55 1 1 81 17 23 54 1 1 37 71 22 1 1 97 4 12 1
Position weight matrix (PWM)
A | -1.16 -0.37 -2.08 -3.47 -3.47 -0.63 -1.52 -0.83 0.34 0.27 -0.98 -0.52 -3.47 -0.10 -3.47 -3.47 -3.47 0.54 0.36 -0.63 C | -2.20 1.15 -2.89 -2.89 -2.89 -2.89 0.64 1.00 -2.89 1.08 -0.25 0.87 -0.69 -1.28 0.92 -2.89 -2.89 0.82 -2.89 0.75 G | -2.89 -2.20 0.80 1.68 1.68 -2.89 0.85 -0.18 -2.89 -1.50 1.40 -2.89 0.11 0.87 1.10 1.68 -2.20 -2.89 0.85 0.92 T | 1.00 -0.47 0.54 -3.47 -3.47 0.93 -0.63 -0.33 0.52 -3.47 -3.47 0.15 0.80 -0.37 -3.47 -3.47 1.11 -2.08 -0.98 -3.47
STP4Macisaac et. alP = 6.63e-09View matrix ↘
Fisher’s P-value6.63e-09
Information content24.99
Max PWM score19.34
Recommended cutoff17.14
Position frequency matrix (PFM)
A | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.335 0.670 0.001 0.336 0.001 0.001 0.335 C | 0.997 0.001 0.997 0.997 0.001 0.328 0.001 0.001 0.335 0.001 0.663 0.001 0.997 0.001 0.663 G | 0.001 0.997 0.001 0.001 0.997 0.001 0.671 0.335 0.328 0.328 0.335 0.336 0.001 0.997 0.001 T | 0.001 0.001 0.001 0.001 0.001 0.670 0.327 0.663 0.001 0.001 0.001 0.328 0.001 0.001 0.001
Position count matrix (PCM)
A | 0 0 0 0 0 0 0 0 33 67 0 33 0 0 33 C | 99 0 99 99 0 32 0 0 33 0 66 0 99 0 66 G | 0 99 0 0 99 0 67 33 32 32 33 33 0 99 0 T | 0 0 0 0 0 67 32 66 0 0 0 32 0 0 0
Position weight matrix (PWM)
A | -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 0.05 0.74 -5.77 0.05 -5.77 -5.77 0.05 C | 1.71 -5.19 1.71 1.71 -5.19 0.60 -5.19 -5.19 0.62 -5.19 1.30 -5.19 1.71 -5.19 1.30 G | -5.19 1.71 -5.19 -5.19 1.71 -5.19 1.32 0.62 0.60 0.60 0.62 0.62 -5.19 1.71 -5.19 T | -5.77 -5.77 -5.77 -5.77 -5.77 0.74 0.02 0.73 -5.77 -5.77 -5.77 0.02 -5.77 -5.77 -5.77
STP4Zhu et. al.P = 2.66e-06View matrix ↘
Fisher’s P-value2.66e-06
Information content14.21
Max PWM score16.51
Recommended cutoff8.9
Position frequency matrix (PFM)
A | 0.07 0.36 0.31 0.11 0.22 0.21 0.18 0.44 0.03 0.01 0.01 0.02 0.03 0.08 0.71 C | 0.65 0.16 0.45 0.18 0.35 0.03 0.11 0.06 0.78 0.03 0.03 0.95 0.01 0.05 0.06 G | 0.14 0.27 0.09 0.17 0.31 0.70 0.11 0.49 0.03 0.95 0.95 0.02 0.08 0.80 0.02 T | 0.14 0.20 0.15 0.53 0.11 0.05 0.60 0.01 0.17 0.01 0.02 0.01 0.88 0.07 0.20
Position count matrix (PCM)
A | 7 36 31 11 22 21 18 44 3 1 1 2 3 8 71 C | 65 16 45 18 35 3 11 6 78 3 3 95 1 5 6 G | 14 27 9 17 31 70 11 49 3 95 95 2 8 80 2 T | 14 20 15 53 11 5 60 1 17 1 2 1 88 7 20
Position weight matrix (PWM)
A | -1.52 0.12 -0.03 -1.07 -0.37 -0.42 -0.58 0.32 -2.37 -3.47 -3.47 -2.77 -2.37 -1.39 0.80 C | 1.28 -0.12 0.92 0.00 0.66 -1.79 -0.49 -1.10 1.47 -1.79 -1.79 1.66 -2.89 -1.28 -1.10 G | -0.25 0.41 -0.69 -0.06 0.54 1.36 -0.49 1.00 -1.79 1.66 1.66 -2.20 -0.81 1.49 -2.20 T | -0.83 -0.47 -0.76 0.50 -1.07 -1.86 0.63 -3.47 -0.63 -3.47 -2.77 -3.47 1.01 -1.52 -0.47
STP4Zhao and StormoP = 1View matrix ↘
Fisher’s P-value1
Information content2.03
Max PWM score4.26
Recommended cutoff4.01
Position frequency matrix (PFM)
A | 0.412 0.257 0.355 0.233 0.283 0.426 0.823 C | 0.193 0.200 0.218 0.325 0.292 0.105 0.047 G | 0.376 0.428 0.220 0.184 0.259 0.280 0.089 T | 0.019 0.114 0.207 0.258 0.167 0.189 0.041
Position count matrix (PCM)
A | 41 25 35 23 28 42 82 C | 19 20 21 32 29 10 4 G | 37 42 22 18 25 28 8 T | 1 11 20 25 16 18 4
Position weight matrix (PWM)
A | 0.25 -0.22 0.10 -0.32 -0.12 0.29 0.94 C | 0.07 0.11 0.19 0.59 0.48 -0.54 -1.34 G | 0.74 0.87 0.20 0.02 0.36 0.44 -0.70 T | -2.82 -1.03 -0.44 -0.22 -0.65 -0.53 -2.05
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 53 genes
YAL040C, YAL063C, YBR083W, YCR018C-A, YCR019W, YDR278C, YDR495C, YDR543C, YDR544C, YDR545W, YER002W, YER011W, YER124C, YER125W, YER189W, YER190W, YGL071W, YGL072C, YGL074C, YGL258W, YHR160C, YIL159W, YIL160C, YIR020C, YJL148W, YJL184W, YJL185C, YKL131W, YKL133C, YKR009C, YKR097W, YLR008C, YLR009W, YLR135W, YLR463C, YLR465C, YLR467W, YMR011W, YMR017W, YMR018W, YMR193W, YNL337W, YOL084W, YOL085C, YOR019W, YOR032C, YOR058C, YOR236W, YOR327C, YOR328W, YPL141C, YPL230W, YPR184W
Genes affected by TF deletion 59 genes
YDR222W, YDR034C-A, YDR365W-B, YGR122C-A, YHR145C, YOR038C, YPL014W, YLR374C, YMR103C, YGR250C, YML027W, YMR104C, YMR136W, YDR340W, YLR121C, YHR192W, YCR021C, YOL051W, YDL072C, YKL051W, YCR018C-A, YMR023C, YNL055C, YNR066C, YJR148W, YOR384W, YMR145C, YIL060W, YIR035C, YLR375W, YMR144W, YNL182C, YOL083W, YPL273W, YER064C, YPL087W, YOL002C, YOR273C, YGR138C, YLR414C, YOR019W, YNL033W, YGR139W, YHR068W, YNL160W, YPR002C-A, YBR054W, YLR297W, YDR055W, YER138W-A, YMR034C, YPL257W-B, YHR135C, YMR181C, YMR211W, YMR250W, YOR092W, YER050C, YNR019W
Genes supported by both experiments 2 genes
YCR018C-A, YOR019W