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STP3

YLR375W

View at SGD ↗

Zinc-finger protein of unknown function, possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.
Fisher’s P-valueNo data
Information content10.42
Max PWM score8.51
Recommended cutoff6.38
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.97 0.01 0.01 0.01 0.01 
C | 0.01 0.01 0.01 0.97 0.01 0.63 
G | 0.01 0.01 0.97 0.01 0.97 0.18 
T | 0.97 0.01 0.01 0.01 0.01 0.18 
Position count matrix (PCM)
A |   1  97   1   1   1   1 
C |   1   1   1  97   1  63 
G |   1   1  97   1  97  18 
T |  97   1   1   1   1  18 
Position weight matrix (PWM)
A | -3.47  1.11 -3.47 -3.47 -3.47 -3.47 
C | -2.89 -2.89 -2.89  1.68 -2.89  1.25 
G | -2.89 -2.89  1.68 -2.89  1.68  0.00 
T |  1.11 -3.47 -3.47 -3.47 -3.47 -0.58 
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 0

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

No additional matrices in the original archive.

03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 1 genes

No Data

Genes supported by both experiments 1 genes

No Data

Predicted TF–TF partners 2 genes

MET31, OPI1

Explore 2 original interaction plots →