← All factors / TF RECORD
SRD1
YCR018C
Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.1509
Information content13.05
Max PWM score10.89
Recommended cutoff8.79
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.72 0.02 0.97 0.05 0.01 0.01 0.93 0.01 0.65 C | 0.01 0.01 0.01 0.01 0.97 0.02 0.04 0.96 0.08 G | 0.26 0.96 0.01 0.01 0.01 0.01 0.02 0.01 0.19 T | 0.01 0.01 0.01 0.93 0.01 0.96 0.01 0.02 0.08
Position count matrix (PCM)
A | 72 2 97 5 1 1 93 1 65 C | 1 1 1 1 97 2 4 96 8 G | 26 96 1 1 1 1 2 1 19 T | 1 1 1 93 1 96 1 2 8
Position weight matrix (PWM)
A | 0.81 -2.77 1.11 -1.86 -3.47 -3.47 1.07 -3.47 0.71 C | -2.89 -2.89 -2.89 -2.89 1.68 -2.20 -1.50 1.67 -0.81 G | 0.37 1.67 -2.89 -2.89 -2.89 -2.89 -2.20 -2.89 0.05 T | -3.47 -3.47 -3.47 1.07 -3.47 1.10 -3.47 -2.77 -1.39
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 3
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
SRD1Badis et. al.P = 0.3373View matrix ↘
Fisher’s P-value0.3373
Information content7.399
Max PWM score6.91
Recommended cutoff6.91
Position frequency matrix (PFM)
A | 0.66 0.06 0.95 0.13 0.01 0.04 C | 0.09 0.02 0.01 0.01 0.97 0.19 G | 0.19 0.90 0.01 0.02 0.01 0.03 T | 0.06 0.02 0.03 0.84 0.01 0.74
Position count matrix (PCM)
A | 66 6 95 13 1 4 C | 9 2 1 1 97 19 G | 19 90 1 2 1 3 T | 6 2 3 84 1 74
Position weight matrix (PWM)
A | 0.72 -1.67 1.09 -0.90 -3.47 -2.08 C | -0.69 -2.20 -2.89 -2.89 1.68 0.05 G | 0.05 1.61 -2.89 -2.20 -2.89 -1.79 T | -1.67 -2.77 -2.37 0.97 -3.47 0.84
SRD1Foat et. al.P = 0.001784View matrix ↘
Fisher’s P-value0.001784
Information content19.33
Max PWM score21.49
Recommended cutoff12.41
Position frequency matrix (PFM)
A | 0.07 0.04 0.33 0.69 0.01 0.01 0.47 0.23 0.60 0.14 0.08 0.38 0.40 0.48 0.03 0.40 0.24 0.02 0.44 0.01 0.04 0.95 0.03 0.03 C | 0.45 0.34 0.66 0.02 0.01 0.07 0.30 0.04 0.30 0.23 0.01 0.01 0.39 0.05 0.09 0.15 0.24 0.65 0.01 0.96 0.01 0.01 0.37 0.01 G | 0.48 0.07 0.01 0.28 0.97 0.02 0.03 0.19 0.01 0.05 0.07 0.33 0.01 0.09 0.77 0.31 0.52 0.17 0.24 0.01 0.18 0.03 0.22 0.04 T | 0.01 0.54 0.01 0.01 0.01 0.90 0.20 0.54 0.09 0.58 0.85 0.27 0.21 0.39 0.12 0.14 0.01 0.16 0.32 0.02 0.77 0.01 0.38 0.92
Position count matrix (PCM)
A | 7 4 33 69 1 1 47 23 60 14 8 38 40 48 3 40 24 2 44 1 4 95 3 3 C | 45 34 66 2 1 7 30 4 30 23 1 1 39 5 9 15 24 65 1 96 1 1 37 1 G | 48 7 1 28 97 2 3 19 1 5 7 33 1 9 77 31 52 17 24 1 18 3 22 4 T | 1 54 1 1 1 90 20 54 9 57 85 27 21 39 12 14 1 16 32 2 77 1 38 92
Position weight matrix (PWM)
A | -1.52 -2.08 0.03 0.77 -3.47 -3.47 0.38 -0.33 0.63 -0.83 -1.39 0.17 0.22 0.41 -2.37 0.22 -0.29 -2.77 0.32 -3.47 -2.08 1.09 -2.37 -2.37 C | 0.92 0.64 1.30 -2.20 -2.89 -0.94 0.51 -1.50 0.51 0.25 -2.89 -2.89 0.77 -1.28 -0.69 -0.18 0.29 1.28 -2.89 1.67 -2.89 -2.89 0.72 -2.89 G | 0.98 -0.94 -2.89 0.44 1.68 -2.20 -1.79 0.05 -2.89 -1.28 -0.94 0.61 -2.89 -0.69 1.45 0.54 1.06 -0.06 0.29 -2.89 0.00 -1.79 0.20 -1.50 T | -3.47 0.52 -3.47 -3.47 -3.47 1.03 -0.47 0.52 -1.27 0.59 0.98 -0.17 -0.42 0.20 -0.98 -0.83 -3.47 -0.69 0.00 -2.77 0.88 -3.47 0.17 1.06
SRD1Zhao and StormoP = 1View matrix ↘
Fisher’s P-value1
Information content0.8278
Max PWM score4.22
Recommended cutoff3.46
Position frequency matrix (PFM)
A | 0.162 0.259 0.238 0.326 0.316 0.324 0.280 0.283 C | 0.242 0.340 0.176 0.227 0.123 0.173 0.253 0.188 G | 0.320 0.212 0.359 0.316 0.332 0.265 0.209 0.272 T | 0.276 0.188 0.227 0.131 0.229 0.238 0.258 0.256
Position count matrix (PCM)
A | 16 25 23 32 31 32 28 28 C | 24 34 17 22 12 17 25 18 G | 32 21 35 31 33 26 20 27 T | 27 18 22 13 22 23 25 25
Position weight matrix (PWM)
A | -0.68 -0.21 -0.30 0.02 -0.01 0.01 -0.13 -0.12 C | 0.30 0.64 -0.02 0.23 -0.38 -0.04 0.34 0.04 G | 0.58 0.16 0.69 0.56 0.61 0.39 0.15 0.41 T | -0.15 -0.53 -0.34 -0.89 -0.33 -0.30 -0.22 -0.22
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 58 genes
YAL022C, YBL023C, YBR012W-A, YBR012W-B, YBR099C, YBR167C, YBR168W, YDL192W, YDL206W, YDL236W, YDR245W, YDR282C, YDR473C, YDR484W, YER049W, YFR017C, YGL192W, YGL194C, YGL214W, YGL216W, YGL219C, YGR166W, YGR220C, YGR277C, YGR278W, YHR072W, YHR072W-A, YHR138C, YIL015C-A, YJR033C, YJR034W, YJR054W, YJR100C, YKR056W, YLL032C, YLR261C, YLR262C, YLR372W, YLR409C, YLR410W, YLR453C, YLR454W, YML106W, YML107C, YMR187C, YMR257C, YNL009W, YNL012W, YNL013C, YNR050C, YOR005C, YOR102W, YOR138C, YOR140W, YPL034W, YPL146C, YPL251W, YPL253C
Genes affected by TF deletion 1 genes
No Data