← All factors / TF RECORD
SPT15
YER148W, TBP, TBP1, BTF1
TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content10.14
Max PWM score9.27
Recommended cutoff6.97
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.440 0.080 0.120 0.040 0.960 0.080 1.000 0.001 0.680 0.240 0.160 C | 0.120 0.120 0.001 0.001 0.040 0.001 0.001 0.200 0.040 0.240 0.120 G | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.280 0.040 0.160 T | 0.440 0.800 0.880 0.960 0.001 0.920 0.001 0.800 0.001 0.480 0.560
Position count matrix (PCM)
A | 44 8 12 4 96 8 100 0 68 24 16 C | 12 12 0 0 4 0 0 20 4 24 12 G | 0 0 0 0 0 0 0 0 28 4 16 T | 44 80 88 96 0 92 0 80 0 48 56
Position weight matrix (PWM)
A | 0.32 -1.39 -0.98 -2.08 1.10 -1.39 1.14 -5.77 0.75 -0.29 -0.69 C | -0.41 -0.41 -5.19 -5.19 -1.50 -5.19 -5.19 0.11 -1.50 0.29 -0.41 G | -5.19 -5.19 -5.19 -5.19 -5.19 -5.19 -5.19 -5.19 0.44 -1.50 -0.12 T | 0.32 0.92 1.01 1.10 -5.77 1.06 -5.77 0.92 -5.77 0.41 0.56
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
SPT15Zhu et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content10.38
Max PWM score10.51
Recommended cutoff7.88
Position frequency matrix (PFM)
A | 0.12 0.29 0.33 0.91 0.01 0.97 0.04 0.96 0.04 0.88 0.19 C | 0.10 0.20 0.11 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.06 G | 0.70 0.27 0.03 0.03 0.02 0.01 0.01 0.01 0.01 0.02 0.09 T | 0.08 0.25 0.53 0.06 0.95 0.01 0.94 0.02 0.94 0.08 0.66
Position count matrix (PCM)
A | 12 28 33 91 1 97 4 96 4 88 19 C | 10 20 11 1 1 1 1 1 1 1 6 G | 70 27 3 3 2 1 1 1 1 2 9 T | 8 25 53 6 95 1 94 2 94 8 66
Position weight matrix (PWM)
A | -0.98 -0.10 0.03 1.05 -3.47 1.11 -2.08 1.10 -2.08 1.01 -0.52 C | -0.59 0.11 -0.49 -2.89 -2.89 -2.89 -2.89 -2.89 -2.89 -2.89 -1.10 G | 1.36 0.41 -1.79 -1.79 -2.20 -2.89 -2.89 -2.89 -2.89 -2.20 -0.69 T | -1.39 -0.25 0.50 -1.67 1.09 -3.47 1.08 -2.77 1.08 -1.39 0.72
SPT15Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content0.413
Max PWM score1.64
Recommended cutoff1.23
Position frequency matrix (PFM)
A | 0.230 0.254 0.281 0.357 0.179 C | 0.239 0.252 0.224 0.164 0.323 G | 0.223 0.257 0.233 0.156 0.339 T | 0.307 0.237 0.262 0.323 0.159
Position count matrix (PCM)
A | 23 25 28 35 17 C | 23 25 22 16 32 G | 22 25 23 15 33 T | 30 23 26 32 15
Position weight matrix (PWM)
A | -0.33 -0.23 -0.13 0.11 -0.58 C | 0.28 0.34 0.22 -0.09 0.58 G | 0.21 0.36 0.26 -0.14 0.63 T | -0.04 -0.30 -0.20 0.01 -0.70
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data