S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

SNF1

YDR477W, PAS14, HAF3, GLC2, CCR1, CAT1

View at SGD ↗

AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Macisaac et. al
Fisher’s P-value1
Information content33.94
Max PWM score24.72
Recommended cutoff18.54
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.001 0.001 0.001 0.499 0.001 0.499 0.997 0.001 0.001 0.001 0.997 0.997 0.001 0.001 0.001 0.001 0.001 
C | 0.997 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.499 0.997 0.001 0.001 
G | 0.001 0.001 0.997 0.499 0.997 0.499 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.997 0.997 
T | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.499 0.001 0.001 0.001
Position count matrix (PCM)
A |   0   0   0  49   0  49  99   0   0   0  99  99   0   0   0   0   0 
C |  99  99   0   0   0   0   0   0  99   0   0   0  99  49  99   0   0 
G |   0   0  99  49  99  49   0   0   0  99   0   0   0   0   0  99  99 
T |   0   0   0   0   0   0   0  99   0   0   0   0   0  49   0   0   0
Position weight matrix (PWM)
A | -5.77 -5.77 -5.77  0.44 -5.77  0.44  1.14 -5.77 -5.77 -5.77  1.14  1.14 -5.77 -5.77 -5.77 -5.77 -5.77 
C |  1.71  1.71 -5.19 -5.19 -5.19 -5.19 -5.19 -5.19  1.71 -5.19 -5.19 -5.19  1.71  1.02  1.71 -5.19 -5.19 
G | -5.19 -5.19  1.71  1.02  1.71  1.02 -5.19 -5.19 -5.19  1.71 -5.19 -5.19 -5.19 -5.19 -5.19  1.71  1.71 
T | -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77  1.14 -5.77 -5.77 -5.77 -5.77 -5.77  0.44 -5.77 -5.77 -5.77
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

SNF1Foat et. al.P = 1View matrix ↘
Sequence logo for SNF1
Fisher’s P-value1
Information content19.38
Max PWM score22.18
Recommended cutoff16.64
Position frequency matrix (PFM)
A | 0.01 0.05 0.20 0.97 0.15 0.01 0.01 0.12 0.43 0.48 0.70 0.12 0.42 0.19 0.16 0.03 0.34 0.03 0.01 0.90 0.41 0.23 
C | 0.03 0.14 0.02 0.01 0.01 0.01 0.01 0.74 0.02 0.45 0.01 0.50 0.01 0.49 0.27 0.75 0.01 0.01 0.90 0.08 0.35 0.06 
G | 0.38 0.64 0.25 0.01 0.84 0.03 0.49 0.01 0.47 0.07 0.04 0.01 0.13 0.24 0.01 0.13 0.38 0.01 0.01 0.01 0.01 0.70 
T | 0.58 0.17 0.53 0.01 0.01 0.95 0.50 0.13 0.08 0.01 0.25 0.38 0.45 0.08 0.56 0.09 0.28 0.95 0.08 0.01 0.24 0.01
Position count matrix (PCM)
A |   1   5  20  97  15   1   1  12  43  48  70  12  42  19  16   3  34   3   1  90  41  23 
C |   3  14   2   1   1   1   1  74   2  45   1  50   1  49  27  75   1   1  90   8  35   6 
G |  38  64  25   1  84   3  49   1  47   7   4   1  13  24   1  13  38   1   1   1   1  70 
T |  57  17  53   1   1  95  50  13   8   1  25  38  45   8  56   9  28  95   8   1  24   1
Position weight matrix (PWM)
A | -3.47 -1.86 -0.47  1.11 -0.76 -3.47 -3.47 -0.98  0.30  0.41  0.78 -0.98  0.27 -0.52 -0.69 -2.37  0.06 -2.37 -3.47  1.03  0.25 -0.33 
C | -1.79 -0.25 -2.20 -2.89 -2.89 -2.89 -2.89  1.41 -2.20  0.92 -2.89  1.02 -2.89  1.00  0.41  1.43 -2.89 -2.89  1.61 -0.81  0.66 -1.10 
G |  0.75  1.27  0.33 -2.89  1.54 -1.79  1.00 -2.89  0.96 -0.94 -1.50 -2.89 -0.33  0.29 -2.89 -0.33  0.75 -2.89 -2.89 -2.89 -2.89  1.36 
T |  0.59 -0.63  0.50 -3.47 -3.47  1.09  0.45 -0.90 -1.39 -3.47 -0.25  0.17  0.34 -1.39  0.56 -1.27 -0.13  1.09 -1.39 -3.47 -0.29 -3.47
Foat et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 22 genes

YAR050W, YBR026C, YBR027C, YCL054W, YDR282C, YDR356W, YGR074W, YGR100W, YHR109W, YIL010W, YJR041C, YJR042W, YMR134W, YMR225C, YNL324W, YNL326C, YOR022C, YPL123C, YPR091C, YPR169W, YPR200C, YPR201W

Genes affected by TF deletion 132 genes

YJR048W, YLR246W, YNL052W, YBR219C, YKL043W, YLR058C, YOR065W, YFR033C, YMR189W, YPL016W, YDR342C, YHR051W, YJR112W, YLL030C, YMR103C, YMR107W, YNL111C, YOR317W, YAR064W, YAR068W, YGL077C, YML027W, YNR028W, YBR129C, YLL061W, YMR070W, YMR104C, YNL144C, YNL116W, YGR243W, YJL146W, YLR183C, YNL300W, YIL124W, YNL024C, YKL053C-A, YLR038C, YMR173W, YPL057C, YER152C, YJR025C, YMR023C, YNL090W, YOR230W, YOR202W, YJR148W, YDL132W, YDR343C, YOL082W, YOR353C, YOR357C, YOR298W, YPL278C, YDL198C, YHR214W, YNL309W, YNR035C, YFL021W, YHR094C, YIR010W, YMR083W, YMR144W, YNL156C, YPL137C, YBR296C, YHR214W-A, YLR133W, YIL094C, YNL099C, YOL002C, YDR345C, YIL114C, YBR177C, YGL055W, YNL289W, YLR260W, YLR290C, YLR294C, YPL253C, YMR173W-A, YDL048C, YGR019W, YGR049W, YMR120C, YOL156W, YOR367W, YPR068C, YJL167W, YMR274C, YNR041C, YBR139W, YDR174W, YDR477W, YHR096C, YIR016W, YJL003W, YLR355C, YOL119C, YBR298C, YNR042W, YPL163C, YCR067C, YHR018C, YIL172C, YLR297W, YMR002W, YOR245C, YGR176W, YMR182C, YPR159W, YGL259W, YKR066C, YKR098C, YMR062C, YGR177C, YKL067W, YLR079W, YLR049C, YLR081W, YMR181C, YDR122W, YLR360W, YMR276W, YPL134C, YBR151W, YFR025C, YGR086C, YKL007W, YOL101C, YIL010W, YIL041W, YML048W

Genes supported by both experiments 1 genes

YIL010W