SKN7
YHR206W, POS9, BRY1
Nuclear response regulator and transcription factor, part of a branched two-component signaling system; required for optimal induction of heat-shock genes in response to oxidative stress; involved in osmoregulation
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.52 0.53 0.24 0.13 0.01 0.01 0.01 0.33 0.01 0.60 0.17 0.08 C | 0.11 0.15 0.02 0.01 0.38 0.97 0.38 0.49 0.01 0.11 0.58 0.70 G | 0.26 0.24 0.66 0.85 0.27 0.01 0.28 0.17 0.96 0.24 0.01 0.17 T | 0.11 0.08 0.08 0.01 0.35 0.01 0.33 0.01 0.02 0.04 0.24 0.05
A | 52 53 24 13 1 1 1 33 1 60 17 8 C | 11 15 2 1 38 97 38 49 1 11 57 70 G | 26 24 66 85 27 1 28 17 96 24 1 17 T | 11 8 8 1 35 1 33 1 2 4 24 5
A | 0.49 0.50 -0.29 -0.90 -3.47 -3.47 -3.47 0.03 -3.47 0.63 -0.63 -1.39 C | -0.49 -0.18 -2.20 -2.89 0.75 1.68 0.75 1.00 -2.89 -0.49 1.17 1.36 G | 0.37 0.29 1.30 1.55 0.41 -2.89 0.44 -0.06 1.67 0.29 -2.89 -0.06 T | -1.07 -1.39 -1.39 -3.47 0.09 -3.47 0.03 -3.47 -2.77 -2.08 -0.29 -1.86
Alternative candidate matrices 9
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
SKN7Badis et. al.P = 7.90e-27View matrix ↘
A | 0.01 0.01 0.01 0.01 0.48 C | 0.01 0.01 0.97 0.82 0.15 G | 0.97 0.97 0.01 0.16 0.36 T | 0.01 0.01 0.01 0.01 0.01
A | 1 1 1 1 48 C | 1 1 97 82 15 G | 97 97 1 16 36 T | 1 1 1 1 1
A | -3.47 -3.47 -3.47 -3.47 0.41 C | -2.89 -2.89 1.68 1.52 -0.18 G | 1.68 1.68 -2.89 -0.12 0.69 T | -3.47 -3.47 -3.47 -3.47 -3.47
SKN7_BFoat et. al.P = 6.75e-31View matrix ↘
A | 0.20 0.52 0.27 0.01 0.01 0.01 0.01 0.54 0.01 0.91 0.02 0.26 0.22 0.02 C | 0.52 0.33 0.32 0.01 0.07 0.97 0.20 0.01 0.01 0.07 0.96 0.47 0.41 0.15 G | 0.27 0.14 0.40 0.97 0.88 0.01 0.77 0.44 0.97 0.01 0.01 0.06 0.29 0.80 T | 0.01 0.01 0.02 0.01 0.04 0.01 0.02 0.01 0.01 0.01 0.01 0.21 0.07 0.03
A | 20 52 27 1 1 1 1 54 1 91 2 26 22 2 C | 52 33 32 1 7 97 20 1 1 7 96 47 41 15 G | 27 14 40 97 88 1 77 44 97 1 1 6 28 80 T | 1 1 2 1 4 1 2 1 1 1 1 21 7 3
A | -0.47 0.49 -0.17 -3.47 -3.47 -3.47 -3.47 0.52 -3.47 1.05 -2.77 -0.21 -0.37 -2.77 C | 1.06 0.61 0.58 -2.89 -0.94 1.68 0.11 -2.89 -2.89 -0.94 1.67 0.96 0.82 -0.18 G | 0.41 -0.25 0.80 1.68 1.59 -2.89 1.45 0.89 1.68 -2.89 -2.89 -1.10 0.48 1.49 T | -3.47 -3.47 -2.77 -3.47 -2.08 -3.47 -2.77 -3.47 -3.47 -3.47 -3.47 -0.42 -1.52 -2.37
SKN7_CFoat et. al.P = 1View matrix ↘
A | 0.97 0.01 0.01 0.97 0.76 0.97 0.32 0.01 0.04 0.35 0.13 0.92 0.01 0.97 0.06 C | 0.01 0.11 0.03 0.01 0.05 0.01 0.01 0.46 0.02 0.53 0.01 0.01 0.22 0.01 0.04 G | 0.01 0.88 0.01 0.01 0.01 0.01 0.28 0.14 0.01 0.12 0.85 0.06 0.01 0.01 0.10 T | 0.01 0.01 0.95 0.01 0.19 0.01 0.40 0.40 0.93 0.01 0.01 0.01 0.77 0.01 0.80
A | 97 1 1 97 76 97 32 1 4 35 13 92 1 97 6 C | 1 11 3 1 5 1 1 46 2 53 1 1 22 1 4 G | 1 88 1 1 1 1 28 14 1 12 85 6 1 1 10 T | 1 1 95 1 19 1 40 40 93 1 1 1 77 1 80
A | 1.11 -3.47 -3.47 1.11 0.86 1.11 0.00 -3.47 -2.08 0.09 -0.90 1.06 -3.47 1.11 -1.67 C | -2.89 -0.49 -1.79 -2.89 -1.28 -2.89 -2.89 0.94 -2.20 1.08 -2.89 -2.89 0.20 -2.89 -1.50 G | -2.89 1.59 -2.89 -2.89 -2.89 -2.89 0.44 -0.25 -2.89 -0.41 1.55 -1.10 -2.89 -2.89 -0.59 T | -3.47 -3.47 1.09 -3.47 -0.52 -3.47 0.22 0.22 1.07 -3.47 -3.47 -3.47 0.88 -3.47 0.92
SKN7_DFoat et. al.P = 4.46e-18View matrix ↘
A | 0.22 0.01 0.14 0.01 0.01 0.01 0.05 0.01 0.01 0.01 0.01 0.01 C | 0.34 0.17 0.37 0.82 0.01 0.02 0.01 0.89 0.97 0.10 0.73 0.13 G | 0.43 0.53 0.01 0.05 0.92 0.96 0.93 0.01 0.01 0.46 0.19 0.85 T | 0.01 0.28 0.49 0.12 0.06 0.01 0.01 0.09 0.01 0.44 0.07 0.01
A | 22 1 14 1 1 1 5 1 1 1 1 1 C | 34 17 37 82 1 2 1 89 97 10 73 13 G | 43 53 1 5 92 96 93 1 1 46 19 85 T | 1 28 49 12 6 1 1 9 1 44 7 1
A | -0.37 -3.47 -0.83 -3.47 -3.47 -3.47 -1.86 -3.47 -3.47 -3.47 -3.47 -3.47 C | 0.64 -0.06 0.72 1.52 -2.89 -2.20 -2.89 1.60 1.68 -0.59 1.40 -0.33 G | 0.87 1.08 -2.89 -1.28 1.63 1.67 1.64 -2.89 -2.89 0.94 0.05 1.55 T | -3.47 -0.13 0.43 -0.98 -1.67 -3.47 -3.47 -1.27 -3.47 0.32 -1.52 -3.47
SKN7Harbison et. al.P = 4.94e-41View matrix ↘
A | 0.054 0.084 0.032 0.054 0.202 0.035 0.101 0.022 0.108 C | 0.048 0.420 0.874 0.313 0.314 0.072 0.425 0.913 0.593 G | 0.840 0.279 0.042 0.309 0.363 0.876 0.428 0.030 0.200 T | 0.059 0.217 0.052 0.324 0.121 0.017 0.046 0.035 0.098
A | 5 8 3 5 20 3 10 2 10 C | 4 42 87 31 31 7 42 91 59 G | 84 27 4 30 36 87 42 3 20 T | 5 21 5 32 12 1 4 3 9
A | -1.78 -1.34 -2.30 -1.78 -0.46 -2.21 -1.15 -2.68 -1.09 C | -1.32 0.85 1.58 0.55 0.56 -0.92 0.86 1.62 1.19 G | 1.54 0.44 -1.46 0.54 0.70 1.58 0.87 -1.79 0.11 T | -1.69 -0.39 -1.82 0.01 -0.97 -2.94 -1.94 -2.21 -1.18
SKN7Macisaac et. alP = 5.10e-40View matrix ↘
A | 0.023 0.001 0.001 0.326 0.076 0.148 0.001 0.073 C | 0.190 0.945 0.384 0.080 0.057 0.255 0.915 0.702 G | 0.202 0.009 0.139 0.558 0.747 0.587 0.016 0.124 T | 0.585 0.045 0.476 0.036 0.120 0.010 0.068 0.101
A | 2 0 0 32 7 14 0 7 C | 19 94 38 8 5 25 91 70 G | 20 0 13 55 74 58 1 12 T | 58 4 47 3 12 1 6 10
A | -2.63 -5.77 -5.77 0.02 -1.44 -0.77 -5.77 -1.48 C | 0.05 1.66 0.76 -0.81 -1.15 0.35 1.63 1.36 G | 0.12 -3.00 -0.26 1.13 1.42 1.18 -2.42 -0.37 T | 0.60 -1.96 0.40 -2.18 -0.98 -3.47 -1.55 -1.15
SKN7Morozov et. al.P = 0.003602View matrix ↘
A | 0.700 0.001 0.814 0.001 0.996 0.014 0.995 C | 0.052 0.002 0.116 0.005 0.001 0.093 0.002 G | 0.096 0.001 0.057 0.001 0.002 0.333 0.002 T | 0.152 0.997 0.013 0.993 0.001 0.561 0.001
A | 70 0 81 0 99 1 99 C | 5 0 11 0 0 9 0 G | 9 0 5 0 0 33 0 T | 15 99 1 99 0 56 0
A | 0.78 -5.77 0.93 -5.77 1.14 -3.13 1.13 C | -1.24 -4.50 -0.44 -3.58 -5.19 -0.66 -4.50 G | -0.63 -5.19 -1.15 -5.19 -4.50 0.62 -4.50 T | -0.74 1.14 -3.20 1.13 -5.77 0.56 -5.77
SKN7Zhu et. al.P = 2.14e-21View matrix ↘
A | 0.21 0.44 0.25 0.14 0.24 0.46 0.03 0.15 0.05 0.02 0.02 0.62 0.26 0.55 0.31 0.18 0.26 C | 0.51 0.09 0.31 0.11 0.11 0.20 0.13 0.15 0.05 0.88 0.69 0.22 0.08 0.11 0.16 0.36 0.08 G | 0.22 0.40 0.32 0.31 0.11 0.07 0.22 0.69 0.88 0.05 0.15 0.13 0.22 0.11 0.20 0.26 0.11 T | 0.06 0.07 0.12 0.44 0.55 0.27 0.62 0.02 0.02 0.05 0.15 0.03 0.44 0.24 0.32 0.21 0.55
A | 21 44 25 14 24 46 3 15 5 2 2 62 26 55 31 18 26 C | 51 9 31 11 11 20 13 15 5 88 69 22 8 11 16 36 8 G | 22 40 32 31 11 7 22 69 88 5 15 13 22 11 20 26 11 T | 6 7 12 44 55 27 62 2 2 5 15 3 44 24 32 21 55
A | -0.42 0.32 -0.25 -0.83 -0.29 0.36 -2.37 -0.76 -1.86 -2.77 -2.77 0.66 -0.21 0.54 -0.03 -0.58 -0.21 C | 1.04 -0.69 0.54 -0.49 -0.49 0.11 -0.33 -0.18 -1.28 1.59 1.34 0.20 -0.81 -0.49 -0.12 0.69 -0.81 G | 0.20 0.80 0.58 0.54 -0.49 -0.94 0.20 1.34 1.59 -1.28 -0.18 -0.33 0.20 -0.49 0.11 0.37 -0.49 T | -1.67 -1.52 -0.98 0.32 0.54 -0.17 0.66 -2.77 -2.77 -1.86 -0.76 -2.37 0.32 -0.29 0.00 -0.42 0.54
SKN7Zhao and StormoP = 3.91e-27View matrix ↘
A | 0.087 0.108 0.004 0.066 0.002 C | 0.198 0.032 0.083 0.831 0.382 G | 0.330 0.846 0.821 0.076 0.360 T | 0.384 0.015 0.092 0.027 0.256
A | 8 10 0 6 0 C | 19 3 8 83 38 G | 33 84 82 7 36 T | 38 1 9 2 25
A | -1.30 -1.09 -4.38 -1.58 -5.08 C | 0.10 -1.73 -0.77 1.53 0.75 G | 0.61 1.55 1.52 -0.86 0.69 T | 0.18 -3.06 -1.25 -2.47 -0.22
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 166 genes
YAR068W, YBL027W, YBL028C, YBL029W, YBR157C, YBR158W, YCR064C, YCR065W, YCR066W, YCR073C, YDL047W, YDL049C, YDL078C, YDL137W, YDR006C, YDR007W, YDR010C, YDR011W, YDR043C, YDR044W, YDR061W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR186C, YDR188W, YDR297W, YDR307W, YDR309C, YDR441C, YDR442W, YDR524C, YDR525W, YDR526C, YEL017C-A, YEL017W, YEL044W, YEL045C, YEL046C, YEL054C, YER011W, YER075C, YER137C-A, YFL021W, YFL022C, YFL039C, YGL055W, YGL056C, YGL125W, YGL234W, YGL236C, YGR032W, YGR060W, YGR088W, YGR106C, YGR140W, YGR143W, YGR249W, YGR260W, YGR279C, YHL034C, YHR003C, YIL012W, YIL013C, YIL058W, YIL060W, YIL061C, YIL099W, YIR020C, YJL048C, YJL105W, YJL112W, YJL115W, YJL116C, YJL148W, YJL158C, YKL062W, YKL096W-A, YKL097C, YKL109W, YKR011C, YKR013W, YKR040C, YKR042W, YKR097W, YLL019C, YLL020C, YLR108C, YLR109W, YLR110C, YLR111W, YLR205C, YLR206W, YLR257W, YLR354C, YLR372W, YLR399C, YLR400W, YLR406C, YLR407W, YML007W, YML008C, YML052W, YML053C, YML088W, YML089C, YML091C, YMR016C, YMR017W, YMR018W, YMR019W, YMR037C, YMR122C, YMR135C, YMR136W, YMR145C, YMR165C, YMR171C, YMR172C-A, YMR172W, YMR173W, YMR173W-A, YMR199W, YMR251W-A, YMR252C, YMR302C, YMR304C-A, YMR305C, YMR306W, YNL014W, YNL034W, YNL098C, YNL103W, YNL104C, YNL170W, YNL172W, YNL173C, YOL026C, YOL052C-A, YOL059W, YOL060C, YOR098C, YOR099W, YOR100C, YOR101W, YOR107W, YOR108W, YOR315W, YOR348C, YOR349W, YPL024W, YPL025C, YPL090C, YPL230W, YPR008W, YPR013C, YPR065W, YPR149W, YPR151C, YPR158C-C, YPR158C-D, YPR159W, YPR160W, YPR161C
Genes affected by TF deletion 122 genes
YCR040W, YIL082W-A, YKR012C, YML116W, YDL131W, YDR220C, YGL009C, YCR013C, YCR041W, YGR279C, YKR042W, YKR013W, YNR060W, YCR097W-A, YGL038C, YHR143W-A, YHR179W, YOR068C, YER011W, YBR098W, YFR005C, YLR340W, YOR351C, YPL187W, YGL105W, YHR208W, YDR461W, YFR006W, YMR135C, YNL146W, YCL018W, YGR185C, YIL015W, YHR209W, YJL144W, YML055W, YML028W, YNL300W, YER155C, YDL133C-A, YLR439W, YMR173W, YOR009W, YBR011C, YDR379W, YER152C, YER154W, YIL153W, YNL055C, YJR148W, YAL012W, YLR099C, YOR010C, YDR502C, YMR139W, YOL144W, YKL178C, YLR343W, YOL143C, YJL158C, YKL177W, YGL250W, YKR061W, YKR093W, YPL252C, YKL096W, YLR040C, YLR042C, YLR108C, YLR420W, YBL098W, YCL066W, YKR086W, YOR210W, YKL120W, YLR041W, YLR109W, YMR173W-A, YOR084W, YPL063W, YCR097W, YFL026W, YHR072W-A, YOL122C, YOL126C, YDR353W, YGL089C, YMR304C-A, YDR297W, YIL061C, YJR004C, YKL216W, YNL322C, YKR035W-A, YLR303W, YMR006C, YHR141C, YJL079C, YOR063W, YDR453C, YLR302C, YOR246C, YBR244W, YGL032C, YKL096W-A, YIR020W-B, YKL008C, YMR099C, YOR034C, YCL009C, YDL182W, YDL184C, YKL194C, YLR180W, YMR276W, YMR305C, YDR151C, YDR519W, YGR086C, YMR158W, YNL200C, YPR173C
Genes supported by both experiments 15 genes
YDR297W, YER011W, YGR279C, YIL061C, YJL158C, YKL096W-A, YKR013W, YKR042W, YLR108C, YLR109W, YMR135C, YMR173W, YMR173W-A, YMR304C-A, YMR305C
Predicted TF–TF partners 13 genes
CAT8, GIS1, HAP5, MSN2, MSN4, PHD1, RGM1, RSC3, SOK2, STB1, SWI4, USV1, YRM1