RTG1
YOL067C
Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.01 0.89 0.01 0.01 0.30 0.12 0.89 0.04 0.01 0.71 0.03 0.92 C | 0.14 0.01 0.04 0.74 0.01 0.02 0.07 0.01 0.16 0.09 0.01 0.01 G | 0.84 0.04 0.01 0.25 0.68 0.26 0.03 0.01 0.83 0.15 0.08 0.01 T | 0.01 0.06 0.93 0.01 0.01 0.61 0.01 0.94 0.01 0.04 0.88 0.07
A | 1 89 1 1 30 12 89 4 1 71 3 92 C | 14 1 4 74 1 2 7 1 16 9 1 1 G | 84 4 1 25 68 26 3 1 83 15 8 1 T | 1 6 93 1 1 61 1 94 1 4 88 7
A | -3.47 1.02 -3.47 -3.47 -0.06 -0.98 1.02 -2.08 -3.47 0.80 -2.37 1.06 C | -0.25 -2.89 -1.50 1.41 -2.89 -2.20 -0.94 -2.89 -0.12 -0.69 -2.89 -2.89 G | 1.54 -1.50 -2.89 0.33 1.33 0.37 -1.79 -2.89 1.53 -0.18 -0.81 -2.89 T | -3.47 -1.67 1.07 -3.47 -3.47 0.65 -3.47 1.08 -3.47 -2.08 1.01 -1.52
Alternative candidate matrices 4
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RTG1_BFoat et. al.P = 0.5553View matrix ↘
A | 0.06 0.77 0.01 0.53 0.01 0.02 0.51 0.48 0.41 0.71 0.01 0.26 0.20 0.10 0.75 0.01 0.01 0.97 0.47 0.22 0.86 C | 0.13 0.03 0.31 0.01 0.71 0.79 0.08 0.14 0.01 0.01 0.61 0.33 0.02 0.01 0.07 0.01 0.01 0.01 0.43 0.09 0.01 G | 0.47 0.02 0.05 0.46 0.01 0.19 0.31 0.28 0.01 0.27 0.17 0.15 0.02 0.60 0.01 0.95 0.03 0.01 0.01 0.01 0.01 T | 0.34 0.17 0.63 0.01 0.27 0.01 0.10 0.10 0.58 0.01 0.21 0.26 0.76 0.30 0.18 0.03 0.95 0.01 0.10 0.68 0.13
A | 6 77 1 53 1 2 51 48 41 71 1 26 20 10 75 1 1 97 47 22 86 C | 13 3 31 1 71 79 8 14 1 1 61 33 2 1 7 1 1 1 43 9 1 G | 47 2 5 46 1 19 31 28 1 27 17 15 2 60 1 95 3 1 1 1 1 T | 34 17 63 1 27 1 10 10 57 1 21 26 76 30 18 3 95 1 10 68 13
A | -1.67 0.88 -3.47 0.50 -3.47 -2.77 0.47 0.41 0.25 0.80 -3.47 -0.21 -0.47 -1.16 0.85 -3.47 -3.47 1.11 0.38 -0.37 0.99 C | -0.33 -1.79 0.54 -2.89 1.37 1.48 -0.81 -0.25 -2.89 -2.89 1.22 0.61 -2.20 -2.89 -0.94 -2.89 -2.89 -2.89 0.87 -0.69 -2.89 G | 0.96 -2.20 -1.28 0.94 -2.89 0.05 0.54 0.44 -2.89 0.41 -0.06 -0.18 -2.20 1.20 -2.89 1.66 -1.79 -2.89 -2.89 -2.89 -2.89 T | 0.06 -0.63 0.68 -3.47 -0.17 -3.47 -1.16 -1.16 0.59 -3.47 -0.42 -0.21 0.86 -0.06 -0.58 -2.37 1.09 -3.47 -1.16 0.75 -0.90
RTG1_CFoat et. al.P = 1View matrix ↘
A | 0.21 0.12 0.17 0.01 0.04 0.90 0.04 0.43 0.18 0.26 0.37 0.45 0.05 0.09 0.63 0.38 0.15 0.05 0.13 0.25 0.01 0.01 0.93 0.66 0.25 0.53 C | 0.34 0.54 0.15 0.09 0.20 0.01 0.48 0.01 0.06 0.25 0.27 0.05 0.76 0.39 0.01 0.18 0.34 0.37 0.17 0.24 0.01 0.97 0.05 0.03 0.28 0.27 G | 0.01 0.30 0.22 0.01 0.73 0.01 0.01 0.44 0.66 0.44 0.04 0.20 0.09 0.04 0.30 0.17 0.33 0.46 0.02 0.39 0.01 0.01 0.01 0.30 0.18 0.20 T | 0.45 0.04 0.47 0.89 0.04 0.08 0.48 0.12 0.10 0.04 0.33 0.30 0.10 0.48 0.06 0.27 0.18 0.12 0.67 0.12 0.97 0.01 0.01 0.01 0.29 0.01
A | 21 12 17 1 4 90 4 43 18 26 37 45 5 9 63 38 15 5 13 25 1 1 93 66 25 53 C | 34 54 15 9 20 1 48 1 6 25 27 5 76 39 1 18 34 37 17 24 1 97 5 3 28 27 G | 1 30 22 1 73 1 1 44 66 44 4 20 9 4 30 17 33 46 2 39 1 1 1 30 18 20 T | 45 4 47 89 4 8 48 12 10 4 33 30 10 48 6 27 18 12 67 12 97 1 1 1 28 1
A | -0.42 -0.98 -0.63 -3.47 -2.08 1.03 -2.08 0.30 -0.58 -0.21 0.15 0.34 -1.86 -1.27 0.68 0.17 -0.76 -1.86 -0.90 -0.25 -3.47 -3.47 1.07 0.72 -0.25 0.50 C | 0.64 1.10 -0.18 -0.69 0.11 -2.89 0.98 -2.89 -1.10 0.33 0.41 -1.28 1.44 0.77 -2.89 0.00 0.64 0.72 -0.06 0.29 -2.89 1.68 -1.28 -1.79 0.44 0.41 G | -2.89 0.51 0.20 -2.89 1.40 -2.89 -2.89 0.89 1.30 0.89 -1.50 0.11 -0.69 -1.50 0.51 -0.06 0.61 0.94 -2.20 0.77 -2.89 -2.89 -2.89 0.51 0.00 0.11 T | 0.34 -2.08 0.38 1.02 -2.08 -1.39 0.41 -0.98 -1.16 -2.08 0.03 -0.06 -1.16 0.41 -1.67 -0.17 -0.58 -0.98 0.74 -0.98 1.11 -3.47 -3.47 -3.47 -0.10 -3.47
RTG1_AMorozov et. al.P = 0.5688View matrix ↘
A | 0.094 0.063 0.149 0.156 0.756 0.082 C | 0.090 0.053 0.039 0.678 0.078 0.731 G | 0.714 0.810 0.122 0.119 0.111 0.118 T | 0.102 0.074 0.689 0.047 0.055 0.069
A | 9 6 14 15 75 8 C | 9 5 3 67 7 73 G | 71 81 12 11 11 11 T | 10 7 68 4 5 6
A | -1.23 -1.63 -0.76 -0.72 0.86 -1.36 C | -0.69 -1.22 -1.53 1.33 -0.84 1.40 G | 1.38 1.50 -0.39 -0.41 -0.48 -0.42 T | -1.14 -1.46 0.77 -1.92 -1.76 -1.53
RTG1_BMorozov et. al.P = 0.5967View matrix ↘
A | 0.051 0.103 0.796 0.051 0.056 0.071 0.620 0.103 C | 0.076 0.353 0.067 0.721 0.087 0.729 0.152 0.254 G | 0.127 0.207 0.071 0.184 0.086 0.132 0.125 0.111 T | 0.746 0.338 0.067 0.044 0.771 0.068 0.103 0.532
A | 5 10 79 5 5 7 62 10 C | 7 35 6 72 8 72 15 25 G | 12 20 7 18 8 13 12 11 T | 74 33 6 4 77 6 10 53
A | -1.84 -1.13 0.91 -1.84 -1.74 -1.51 0.66 -1.13 C | -0.86 0.67 -0.99 1.39 -0.73 1.40 -0.17 0.34 G | -0.35 0.14 -0.93 0.02 -0.74 -0.31 -0.36 -0.48 T | 0.85 0.05 -1.56 -1.98 0.88 -1.55 -1.13 0.51
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 76 genes
YAL028W, YAL029C, YBL097W, YBR245C, YBR275C, YCR018C-A, YCR019W, YDL073W, YDL074C, YDL247W, YDR045C, YDR179C, YDR179W-A, YDR193W, YDR284C, YDR285W, YDR298C, YDR299W, YDR394W, YDR440W, YDR473C, YER049W, YER057C, YER058W, YER139C, YER140W, YER142C, YER143W, YGL001C, YGL133W, YGL207W, YGL258W, YGR098C, YGR099W, YGR112W, YGR167W, YGR289C, YHL008C, YHR028C, YHR176W, YIL156W, YIL157C, YJL037W, YJL038C, YJR030C, YJR051W, YJR098C, YJR099W, YJR100C, YKL071W, YKL085W, YKL162C, YKR098C, YKR099W, YLR353W, YLR363C, YLR364W, YML094W, YML095C, YMR089C, YMR090W, YMR098C, YMR125W, YMR126C, YMR178W, YMR257C, YNL188W, YNL303W, YNL304W, YNL305C, YNL323W, YNL325C, YPL014W, YPL015C, YPL251W, YPL253C
Genes affected by TF deletion 54 genes
YKL043W, YLR432W, YPL240C, YOR038C, YPL016W, YHR057C, YDL188C, YER028C, YOR165W, YBR093C, YDR461W, YDR467C, YDR281C, YOR043W, YCR045C, YGR131W, YIR036C, YDL196W, YHR215W, YBR105C, YDR169C, YFL016C, YAR071W, YAR075W, YHR216W, YNL064C, YJL068C, YBL007C, YBR146W, YDR543C, YFL026W, YFR021W, YGR077C, YGR019W, YKL033W-A, YLR354C, YOL120C, YDL049C, YJL160C, YHR202W, YOR027W, YMR034C, YOL065C, YOL067C, YGL032C, YJL076W, YPL075W, YLR023C, YNL141W, YLR146C, YOL101C, YOR306C, YJL200C, YNL007C