← All factors / TF RECORD
RSF2
YJR127C, ZMS1
Zinc-finger protein involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.2545
Information content11.03
Max PWM score9.8
Recommended cutoff8.2
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.19 0.05 0.50 C | 0.97 0.97 0.97 0.97 0.04 0.85 0.10 G | 0.01 0.01 0.01 0.01 0.53 0.05 0.10 T | 0.01 0.01 0.01 0.01 0.24 0.05 0.30
Position count matrix (PCM)
A | 1 1 1 1 19 5 50 C | 97 97 97 97 4 85 10 G | 1 1 1 1 53 5 10 T | 1 1 1 1 24 5 30
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -0.52 -1.86 0.45 C | 1.68 1.68 1.68 1.68 -1.50 1.55 -0.59 G | -2.89 -2.89 -2.89 -2.89 1.08 -1.28 -0.59 T | -3.47 -3.47 -3.47 -3.47 -0.29 -1.86 -0.06
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 1
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RSF2Foat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content22.19
Max PWM score25.31
Recommended cutoff18.98
Position frequency matrix (PFM)
A | 0.01 0.26 0.35 0.01 0.96 0.02 0.18 0.23 0.12 0.38 0.42 0.21 0.61 0.01 0.08 0.24 0.03 0.02 0.02 0.02 0.61 0.05 0.01 0.01 0.51 C | 0.44 0.22 0.06 0.01 0.02 0.96 0.32 0.01 0.59 0.03 0.01 0.53 0.04 0.44 0.06 0.60 0.21 0.69 0.06 0.65 0.08 0.93 0.97 0.01 0.12 G | 0.05 0.04 0.55 0.01 0.01 0.01 0.09 0.65 0.03 0.38 0.05 0.21 0.31 0.04 0.11 0.13 0.38 0.20 0.56 0.13 0.30 0.01 0.01 0.01 0.01 T | 0.50 0.48 0.04 0.97 0.01 0.01 0.41 0.10 0.25 0.21 0.52 0.05 0.05 0.52 0.75 0.03 0.38 0.08 0.35 0.20 0.02 0.01 0.01 0.97 0.37
Position count matrix (PCM)
A | 1 26 35 1 96 2 18 23 12 38 42 21 61 1 8 24 3 2 2 2 61 5 1 1 51 C | 44 22 6 1 2 96 32 1 59 3 1 53 4 44 6 60 21 69 6 65 8 93 97 1 12 G | 5 4 55 1 1 1 9 65 3 38 5 21 31 4 11 13 38 20 56 13 30 1 1 1 1 T | 50 48 4 97 1 1 41 10 25 21 52 5 5 52 75 3 38 8 35 20 2 1 1 97 37
Position weight matrix (PWM)
A | -3.47 -0.21 0.09 -3.47 1.10 -2.77 -0.58 -0.33 -0.98 0.17 0.27 -0.42 0.65 -3.47 -1.39 -0.29 -2.37 -2.77 -2.77 -2.77 0.65 -1.86 -3.47 -3.47 0.47 C | 0.89 0.20 -1.10 -2.89 -2.20 1.67 0.58 -2.89 1.19 -1.79 -2.89 1.08 -1.50 0.89 -1.10 1.20 0.15 1.34 -1.10 1.28 -0.81 1.64 1.68 -2.89 -0.41 G | -1.28 -1.50 1.12 -2.89 -2.89 -2.89 -0.69 1.28 -1.79 0.75 -1.28 0.15 0.54 -1.50 -0.49 -0.33 0.75 0.11 1.13 -0.33 0.51 -2.89 -2.89 -2.89 -2.89 T | 0.45 0.41 -2.08 1.11 -3.47 -3.47 0.25 -1.16 -0.25 -0.42 0.49 -1.86 -1.86 0.49 0.85 -2.37 0.17 -1.39 0.09 -0.47 -2.77 -3.47 -3.47 1.11 0.15
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 21 genes
AFT1, AFT2, ARG80, CAT8, GIS1, HAP1, HMS1, MIG1, MIG3, MSN2, MSN4, NRG1, PDR1, RGM1, RPH1, STP1, STP2, SUT1, UME6, USV1, YER130C