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RSC30
YHR056C
Component of the RSC chromatin remodeling complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc3p; null mutants are osmosensitive
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content11.84
Max PWM score10.31
Recommended cutoff7.73
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.15 0.01 0.01 0.01 0.01 0.01 0.01 C | 0.38 0.90 0.08 0.90 0.01 0.83 0.30 G | 0.46 0.08 0.90 0.08 0.97 0.15 0.68 T | 0.01 0.01 0.01 0.01 0.01 0.01 0.01
Position count matrix (PCM)
A | 15 1 1 1 1 1 1 C | 38 90 8 90 1 83 30 G | 46 8 90 8 97 15 68 T | 1 1 1 1 1 1 1
Position weight matrix (PWM)
A | -0.76 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 C | 0.75 1.61 -0.81 1.61 -2.89 1.53 0.51 G | 0.94 -0.81 1.61 -0.81 1.68 -0.18 1.33 T | -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RSC30Zhu et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content15.14
Max PWM score14.86
Recommended cutoff11.14
Position frequency matrix (PFM)
A | 0.11 0.10 0.02 0.02 0.01 0.01 0.01 0.06 0.03 0.12 C | 0.70 0.24 0.89 0.09 0.95 0.02 0.88 0.04 0.60 0.06 G | 0.06 0.62 0.04 0.88 0.02 0.95 0.09 0.89 0.31 0.70 T | 0.12 0.03 0.06 0.01 0.01 0.01 0.02 0.02 0.07 0.11
Position count matrix (PCM)
A | 11 10 2 2 1 1 1 6 3 12 C | 70 24 89 9 95 2 88 4 60 6 G | 6 62 4 88 2 95 9 89 31 70 T | 12 3 6 1 1 1 2 2 7 11
Position weight matrix (PWM)
A | -1.07 -1.16 -2.77 -2.77 -3.47 -3.47 -3.47 -1.67 -2.37 -0.98 C | 1.36 0.29 1.60 -0.69 1.66 -2.20 1.59 -1.50 1.20 -1.10 G | -1.10 1.24 -1.50 1.59 -2.20 1.66 -0.69 1.60 0.54 1.36 T | -0.98 -2.37 -1.67 -3.47 -3.47 -3.47 -2.77 -2.77 -1.52 -1.07
RSC30Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content6.154
Max PWM score6.4
Recommended cutoff4.8
Position frequency matrix (PFM)
A | 0.098 0.028 0.004 0.008 0.204 C | 0.426 0.667 0.947 0.004 0.449 G | 0.201 0.297 0.048 0.942 0.085 T | 0.274 0.009 0.001 0.046 0.262
Position count matrix (PCM)
A | 9 2 0 0 20 C | 42 66 94 0 44 G | 20 29 4 94 8 T | 27 0 0 4 26
Position weight matrix (PWM)
A | -1.18 -2.44 -4.38 -3.69 -0.45 C | 0.86 1.31 1.66 -3.81 0.91 G | 0.11 0.50 -1.32 1.66 -0.75 T | -0.16 -3.57 -5.77 -1.94 -0.20
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 4 genes
IME1, PDR1, STP1, UME6