← All factors / TF RECORD
RSC3
YDR303C
Component of the RSC chromatin remodeling complex; essential gene required for maintenance of proper ploidy and regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc30p
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content9.11
Max PWM score7.78
Recommended cutoff7.73
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.06 C | 0.90 0.01 0.97 0.01 0.56 G | 0.05 0.97 0.01 0.97 0.18 T | 0.04 0.01 0.01 0.01 0.20
Position count matrix (PCM)
A | 1 1 1 1 6 C | 90 1 97 1 56 G | 5 97 1 97 18 T | 4 1 1 1 20
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -1.67 C | 1.61 -2.89 1.68 -2.89 1.13 G | -1.28 1.68 -2.89 1.68 0.00 T | -2.08 -3.47 -3.47 -3.47 -0.47
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 3
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RSC3Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content9.11
Max PWM score7.78
Recommended cutoff5.84
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.06 C | 0.90 0.01 0.97 0.01 0.56 G | 0.05 0.97 0.01 0.97 0.18 T | 0.04 0.01 0.01 0.01 0.20
Position count matrix (PCM)
A | 1 1 1 1 6 C | 90 1 97 1 56 G | 5 97 1 97 18 T | 4 1 1 1 20
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -1.67 C | 1.61 -2.89 1.68 -2.89 1.13 G | -1.28 1.68 -2.89 1.68 0.00 T | -2.08 -3.47 -3.47 -3.47 -0.47
RSC3Zhu et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content16.04
Max PWM score18.57
Recommended cutoff13.93
Position frequency matrix (PFM)
A | 0.22 0.50 0.34 0.46 0.44 0.15 0.62 0.25 0.04 0.04 0.01 0.01 0.01 0.01 0.08 0.04 0.34 0.23 0.21 0.09 C | 0.34 0.17 0.03 0.36 0.24 0.18 0.13 0.27 0.80 0.05 0.97 0.02 0.97 0.01 0.74 0.19 0.36 0.22 0.13 0.06 G | 0.03 0.11 0.12 0.05 0.15 0.35 0.15 0.39 0.09 0.89 0.01 0.96 0.01 0.97 0.11 0.28 0.16 0.14 0.34 0.21 T | 0.41 0.21 0.51 0.12 0.17 0.31 0.09 0.09 0.07 0.03 0.01 0.01 0.01 0.01 0.07 0.48 0.14 0.40 0.33 0.65
Position count matrix (PCM)
A | 22 50 34 46 44 15 62 25 4 4 1 1 1 1 8 4 34 23 21 9 C | 34 17 3 36 24 18 13 27 80 5 97 2 97 1 74 19 36 22 13 6 G | 3 11 12 5 15 35 15 39 9 89 1 96 1 97 11 28 16 14 34 21 T | 41 21 51 12 17 31 9 9 7 3 1 1 1 1 7 48 14 40 33 65
Position weight matrix (PWM)
A | -0.37 0.45 0.06 0.36 0.32 -0.76 0.66 -0.25 -2.08 -2.08 -3.47 -3.47 -3.47 -3.47 -1.39 -2.08 0.06 -0.33 -0.42 -1.27 C | 0.64 -0.06 -1.79 0.69 0.29 0.00 -0.33 0.41 1.49 -1.28 1.68 -2.20 1.68 -2.89 1.41 0.05 0.69 0.20 -0.33 -1.10 G | -1.79 -0.49 -0.41 -1.28 -0.18 0.66 -0.18 0.77 -0.69 1.60 -2.89 1.67 -2.89 1.68 -0.49 0.44 -0.12 -0.25 0.64 0.15 T | 0.25 -0.42 0.47 -0.98 -0.63 -0.03 -1.27 -1.27 -1.52 -2.37 -3.47 -3.47 -3.47 -3.47 -1.52 0.41 -0.83 0.22 0.03 0.71
RSC3Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content6.183
Max PWM score7.14
Recommended cutoff5.36
Position frequency matrix (PFM)
A | 0.192 0.192 0.001 0.001 0.001 0.237 0.236 0.261 C | 0.353 0.110 0.997 0.084 0.440 0.215 0.261 0.246 G | 0.197 0.356 0.001 0.914 0.482 0.399 0.208 0.182 T | 0.259 0.342 0.001 0.001 0.077 0.150 0.295 0.310
Position count matrix (PCM)
A | 19 19 0 0 0 23 23 26 C | 35 11 99 8 44 21 26 24 G | 19 35 0 91 48 39 20 18 T | 25 34 0 0 7 15 29 31
Position weight matrix (PWM)
A | -0.51 -0.51 -5.77 -5.77 -5.77 -0.30 -0.30 -0.20 C | 0.67 -0.49 1.71 -0.76 0.89 0.18 0.37 0.31 G | 0.09 0.68 -5.19 1.62 0.98 0.80 0.14 0.01 T | -0.21 0.07 -5.77 -5.77 -1.42 -0.76 -0.08 -0.03
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 20 genes
CAT8, GCN4, GIS1, GSM1, HAP2, HAP4, IME1, MSN4, NHP10, NRG1, PDR1, RDR1, RGM1, RTG3, SKN7, STP1, SUT1, UME6, USV1, YER184C