← All factors / TF RECORD
RLM1
YPL089C
MADS-box transcription factor, component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value1.02e-15
Information content11.27
Max PWM score10.89
Recommended cutoff7.35
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.090 0.021 0.012 0.905 0.368 0.545 0.574 0.728 0.025 0.952 0.051 C | 0.055 0.935 0.029 0.028 0.024 0.024 0.018 0.011 0.015 0.012 0.034 G | 0.138 0.028 0.012 0.017 0.012 0.015 0.011 0.011 0.011 0.024 0.863 T | 0.718 0.015 0.948 0.050 0.595 0.417 0.396 0.249 0.949 0.012 0.051
Position count matrix (PCM)
A | 9 2 1 90 36 54 57 72 2 95 5 C | 5 93 2 2 2 2 1 1 1 1 3 G | 13 2 1 1 1 1 1 1 1 2 86 T | 71 1 94 5 59 41 39 24 94 1 5
Position weight matrix (PWM)
A | -1.27 -2.72 -3.28 1.04 0.14 0.53 0.58 0.82 -2.55 1.09 -1.84 C | -1.19 1.65 -1.83 -1.86 -2.01 -2.01 -2.30 -2.80 -2.48 -2.71 -1.67 G | -0.27 -1.86 -2.71 -2.36 -2.71 -2.48 -2.80 -2.80 -2.80 -2.01 1.57 T | 0.81 -3.06 1.09 -1.86 0.62 0.26 0.21 -0.25 1.09 -3.28 -1.84
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 7
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RLM1_AFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content16.36
Max PWM score16.11
Recommended cutoff12.08
Position frequency matrix (PFM)
A | 0.15 0.52 0.06 0.43 0.06 0.03 0.45 0.01 0.01 0.46 0.01 0.59 0.97 0.05 0.04 0.07 C | 0.46 0.04 0.28 0.06 0.01 0.93 0.02 0.47 0.29 0.01 0.93 0.31 0.01 0.01 0.94 0.38 G | 0.06 0.16 0.01 0.01 0.91 0.01 0.01 0.02 0.63 0.05 0.04 0.01 0.01 0.03 0.01 0.52 T | 0.33 0.28 0.65 0.51 0.03 0.04 0.53 0.51 0.08 0.48 0.03 0.09 0.01 0.91 0.01 0.02
Position count matrix (PCM)
A | 15 52 6 43 6 3 45 1 1 46 1 59 97 5 4 7 C | 46 4 28 6 1 93 2 47 28 1 93 31 1 1 94 38 G | 6 16 1 1 91 1 1 2 63 5 4 1 1 3 1 52 T | 33 28 65 51 3 4 53 51 8 48 3 9 1 91 1 2
Position weight matrix (PWM)
A | -0.76 0.49 -1.67 0.30 -1.67 -2.37 0.34 -3.47 -3.47 0.36 -3.47 0.61 1.11 -1.86 -2.08 -1.52 C | 0.94 -1.50 0.44 -1.10 -2.89 1.64 -2.20 0.96 0.48 -2.89 1.64 0.54 -2.89 -2.89 1.65 0.75 G | -1.10 -0.12 -2.89 -2.89 1.62 -2.89 -2.89 -2.20 1.25 -1.28 -1.50 -2.89 -2.89 -1.79 -2.89 1.06 T | 0.03 -0.13 0.71 0.47 -2.37 -2.08 0.50 0.47 -1.39 0.41 -2.37 -1.27 -3.47 1.05 -3.47 -2.77
RLM1_BFoat et. al.P = 0.1476View matrix ↘
Fisher’s P-value0.1476
Information content18.55
Max PWM score20.33
Recommended cutoff10.45
Position frequency matrix (PFM)
A | 0.16 0.55 0.01 0.02 0.01 0.92 0.04 0.01 0.80 0.01 0.06 0.03 0.08 0.68 0.53 0.01 0.97 0.01 0.65 0.42 0.25 C | 0.21 0.14 0.52 0.96 0.93 0.01 0.12 0.25 0.18 0.42 0.03 0.74 0.14 0.01 0.26 0.01 0.01 0.73 0.05 0.01 0.38 G | 0.54 0.01 0.23 0.01 0.01 0.07 0.12 0.15 0.01 0.23 0.41 0.22 0.52 0.25 0.01 0.01 0.01 0.24 0.03 0.06 0.01 T | 0.08 0.31 0.24 0.01 0.05 0.01 0.72 0.59 0.01 0.35 0.50 0.01 0.25 0.07 0.21 0.97 0.01 0.03 0.26 0.50 0.36
Position count matrix (PCM)
A | 16 55 1 2 1 92 4 1 80 1 6 3 8 68 53 1 97 1 65 42 25 C | 21 14 52 96 93 1 12 25 18 42 3 74 14 1 26 1 1 73 5 1 38 G | 54 1 23 1 1 7 12 15 1 23 41 22 52 25 1 1 1 24 3 6 1 T | 8 31 24 1 5 1 72 59 1 35 50 1 25 7 21 97 1 3 26 50 36
Position weight matrix (PWM)
A | -0.69 0.54 -3.47 -2.77 -3.47 1.06 -2.08 -3.47 0.92 -3.47 -1.67 -2.37 -1.39 0.75 0.50 -3.47 1.11 -3.47 0.71 0.27 -0.25 C | 0.15 -0.25 1.06 1.67 1.64 -2.89 -0.41 0.33 0.00 0.85 -1.79 1.41 -0.25 -2.89 0.37 -2.89 -2.89 1.40 -1.28 -2.89 0.75 G | 1.10 -2.89 0.25 -2.89 -2.89 -0.94 -0.41 -0.18 -2.89 0.25 0.82 0.20 1.06 0.33 -2.89 -2.89 -2.89 0.29 -1.79 -1.10 -2.89 T | -1.39 -0.03 -0.29 -3.47 -1.86 -3.47 0.81 0.61 -3.47 0.09 0.45 -3.47 -0.25 -1.52 -0.42 1.11 -3.47 -2.37 -0.21 0.45 0.12
RLM1Harbison et. al.P = 7.16e-12View matrix ↘
Fisher’s P-value7.16e-12
Information content11.9
Max PWM score9.44
Recommended cutoff9.44
Position frequency matrix (PFM)
A | 0.012 0.012 0.965 0.488 0.488 0.488 0.488 0.012 0.965 0.012 C | 0.965 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 G | 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.965 T | 0.012 0.965 0.012 0.488 0.488 0.488 0.488 0.965 0.012 0.012
Position count matrix (PCM)
A | 1 1 96 48 48 48 48 1 96 1 C | 96 1 1 1 1 1 1 1 1 1 G | 1 1 1 1 1 1 1 1 1 96 T | 1 96 1 48 48 48 48 96 1 1
Position weight matrix (PWM)
A | -3.28 -3.28 1.10 0.42 0.42 0.42 0.42 -3.28 1.10 -3.28 C | 1.68 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 G | -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 1.68 T | -3.28 1.10 -3.28 0.42 0.42 0.42 0.42 1.10 -3.28 -3.28
RLM1Macisaac et. alP = 1.83e-10View matrix ↘
Fisher’s P-value1.83e-10
Information content8.659
Max PWM score9.31
Recommended cutoff6.02
Position frequency matrix (PFM)
A | 0.002 0.866 0.107 0.052 0.048 0.654 0.305 0.860 0.031 0.609 C | 0.098 0.001 0.001 0.001 0.024 0.003 0.038 0.001 0.132 0.077 G | 0.002 0.029 0.001 0.056 0.095 0.101 0.132 0.138 0.761 0.143 T | 0.898 0.104 0.891 0.891 0.833 0.242 0.525 0.001 0.076 0.171
Position count matrix (PCM)
A | 0 86 10 5 4 65 30 86 3 60 C | 9 0 0 0 2 0 3 0 13 7 G | 0 2 0 5 9 10 13 13 76 14 T | 89 10 89 89 83 24 52 0 7 17
Position weight matrix (PWM)
A | -5.08 1.00 -1.10 -1.82 -1.90 0.71 -0.05 0.99 -2.33 0.64 C | -0.61 -5.19 -5.19 -5.19 -2.01 -4.09 -1.56 -5.19 -0.31 -0.85 G | -4.50 -1.83 -5.19 -1.17 -0.64 -0.58 -0.31 -0.27 1.44 -0.23 T | 1.03 -1.12 1.02 1.02 0.96 -0.28 0.50 -5.77 -1.44 -0.63
RLM1Morozov et. al.P = 5.14e-11View matrix ↘
Fisher’s P-value5.14e-11
Information content8.159
Max PWM score8.91
Recommended cutoff6.93
Position frequency matrix (PFM)
A | 0.298 0.008 0.962 0.101 0.436 0.265 0.419 0.028 0.962 0.015 C | 0.566 0.009 0.005 0.128 0.101 0.109 0.071 0.051 0.010 0.084 G | 0.106 0.008 0.016 0.035 0.133 0.094 0.054 0.038 0.015 0.751 T | 0.030 0.975 0.016 0.737 0.330 0.533 0.456 0.883 0.014 0.150
Position count matrix (PCM)
A | 29 0 96 10 43 26 41 2 96 1 C | 56 0 0 12 10 10 7 5 1 8 G | 10 0 1 3 13 9 5 3 1 75 T | 3 97 1 73 33 53 45 88 1 15
Position weight matrix (PWM)
A | -0.07 -3.69 1.10 -1.15 0.31 -0.19 0.27 -2.44 1.10 -3.06 C | 1.15 -3.00 -3.58 -0.34 -0.58 -0.50 -0.93 -1.26 -2.89 -0.76 G | -0.53 -3.11 -2.42 -1.64 -0.30 -0.65 -1.20 -1.56 -2.48 1.43 T | -2.37 1.11 -3.00 0.83 0.03 0.51 0.35 1.02 -3.13 -0.76
RLM1Pachkov et alP = 7.86e-05View matrix ↘
Fisher’s P-value7.86e-05
Information content13.93
Max PWM score13.53
Recommended cutoff6.84
Position frequency matrix (PFM)
A | 0.340 0.614 0.001 0.092 0.526 0.945 1.000 0.416 0.311 0.112 0.001 0.888 0.526 1.000 0.657 C | 0.125 0.001 0.125 0.461 0.001 0.001 0.001 0.001 0.171 0.001 0.182 0.001 0.001 0.001 0.001 G | 0.371 0.386 0.723 0.211 0.001 0.055 0.001 0.367 0.001 0.001 0.001 0.112 0.474 0.001 0.001 T | 0.164 0.001 0.152 0.236 0.474 0.001 0.001 0.217 0.518 0.888 0.818 0.001 0.001 0.001 0.343
Position count matrix (PCM)
A | 34 61 0 9 52 94 100 41 31 11 0 88 52 100 65 C | 12 0 12 46 0 0 0 0 17 0 18 0 0 0 0 G | 37 38 72 21 0 5 0 36 0 0 0 11 47 0 0 T | 16 0 15 23 47 0 0 21 51 88 81 0 0 0 34
Position weight matrix (PWM)
A | 0.06 0.65 -5.77 -1.25 0.50 1.08 1.14 0.26 -0.03 -1.05 -5.77 1.02 0.50 1.14 0.72 C | -0.36 -5.19 -0.36 0.94 -5.19 -5.19 -5.19 -5.19 -0.05 -5.19 0.01 -5.19 -5.19 -5.19 -5.19 G | 0.72 0.76 1.39 0.16 -5.19 -1.19 -5.19 0.71 -5.19 -5.19 -5.19 -0.47 0.97 -5.19 -5.19 T | -0.67 -5.77 -0.74 -0.30 0.39 -5.77 -5.77 -0.39 0.48 1.02 0.94 -5.77 -5.77 -5.77 0.07
RLM1Zhu J and MQ ZhangP = 1.54e-09View matrix ↘
Fisher’s P-value1.54e-09
Information content13.89
Max PWM score15.34
Recommended cutoff7.92
Position frequency matrix (PFM)
A | 0.26 0.33 0.26 0.02 0.02 0.02 0.93 0.37 0.50 0.52 0.72 0.02 0.93 0.02 0.61 0.11 0.17 0.25 C | 0.26 0.07 0.02 0.02 0.93 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.33 0.36 0.37 0.32 G | 0.26 0.37 0.04 0.13 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.93 0.02 0.07 0.09 0.25 T | 0.21 0.24 0.67 0.83 0.02 0.93 0.02 0.59 0.46 0.43 0.24 0.93 0.02 0.02 0.04 0.47 0.37 0.18
Position count matrix (PCM)
A | 26 33 26 2 2 2 93 37 50 52 72 2 93 2 61 11 17 25 C | 26 7 2 2 93 2 2 2 2 2 2 2 2 2 33 36 37 32 G | 26 37 4 13 2 2 2 2 2 2 2 2 2 93 2 7 9 25 T | 21 24 67 83 2 93 2 59 46 43 24 93 2 2 4 47 37 18
Position weight matrix (PWM)
A | -0.21 0.03 -0.21 -2.77 -2.77 -2.77 1.07 0.15 0.45 0.49 0.81 -2.77 1.07 -2.77 0.65 -1.07 -0.63 -0.25 C | 0.37 -0.94 -2.20 -2.20 1.64 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 0.61 0.69 0.72 0.58 G | 0.37 0.72 -1.50 -0.33 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 -2.20 1.64 -2.20 -0.94 -0.69 0.33 T | -0.42 -0.29 0.74 0.95 -2.77 1.07 -2.77 0.61 0.36 0.30 -0.29 1.07 -2.77 -2.77 -2.08 0.38 0.15 -0.58
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 120 genes
YBL001C, YBR057C, YBR156C, YBR158W, YBR159W, YCL019W, YCL020W, YCL022C, YCL023C, YCR018C-A, YCR019W, YCR024C, YDL037C, YDL044C, YDL245C, YDL246C, YDL247W, YDR042C, YDR054C, YDR055W, YDR072C, YDR073W, YDR077W, YDR085C, YDR210W-D, YDR279W, YDR283C, YDR309C, YDR372C, YDR373W, YDR417C, YDR419W, YDR420W, YDR524C, YDR525W, YDR526C, YEL001C, YEL040W, YEL050C, YEL070W, YER001W, YER111C, YER112W, YER130C, YER131W, YER138C, YFR001W, YGL009C, YGL158W, YGL195W, YGL259W, YGR107W, YGR189C, YGR191W, YGR218W, YHL027W, YHL034C, YHL041W, YHR143W, YHR143W-A, YHR193C, YHR194W, YIL040W, YIL119C, YIL122W, YJL104W, YJL106W, YJL107C, YJL108C, YJL148W, YJL158C, YJL159W, YJR158W, YJR159W, YKL039W, YKL040C, YKL072W, YKL096W, YKL161C, YKL163W, YKL177W, YKL179C, YKR091W, YKR102W, YKR103W, YLL027W, YLR035C-A, YLR105C, YLR110C, YLR111W, YLR154C, YLR300W, YLR332W, YLR342W, YLR354C, YLR368W, YLR390W-A, YLR413W, YLR463C, YLR465C, YLR467W, YML055W, YML056C, YML124C, YMR013C, YMR014W, YMR049C, YNL066W, YNR050C, YOL159C, YOL160W, YOR058C, YOR108W, YOR236W, YOR268C, YOR269W, YOR315W, YOR355W, YPR195C, YPR197C
Genes affected by TF deletion 20 genes
YNL276C, YFR006W, YOR290C, YPL089C, YLR155C, YLR157C, YEL023C, YLR099C, YLR101C, YBL031W, YLR158C, YLR160C, YJR152W, YLR258W, YLR294C, YOL122C, YDR174W, YLR112W, YDR395W, YKR062W