RIM101
YHL027W, RIM1
Transcriptional repressor involved in response to pH and in cell wall construction; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by proteolytic processing; similar to A. nidulans PacC
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.012 0.012 0.012 0.012 0.965 0.965 0.012 C | 0.012 0.012 0.965 0.965 0.012 0.012 0.012 G | 0.012 0.965 0.012 0.012 0.012 0.012 0.965 T | 0.965 0.012 0.012 0.012 0.012 0.012 0.012
A | 1 1 1 1 96 96 1 C | 1 1 96 96 1 1 1 G | 1 96 1 1 1 1 96 T | 96 1 1 1 1 1 1
A | -3.28 -3.28 -3.28 -3.28 1.10 1.10 -3.28 C | -2.71 -2.71 1.68 1.68 -2.71 -2.71 -2.71 G | -2.71 1.68 -2.71 -2.71 -2.71 -2.71 1.68 T | 1.10 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28
Alternative candidate matrices 5
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RIM101Badis et. al.P = 0.4788View matrix ↘
A | 0.09 0.01 0.01 0.01 0.97 0.97 0.01 C | 0.43 0.01 0.97 0.97 0.01 0.01 0.01 G | 0.09 0.97 0.01 0.01 0.01 0.01 0.97 T | 0.39 0.01 0.01 0.01 0.01 0.01 0.01
A | 9 1 1 1 97 97 1 C | 43 1 97 97 1 1 1 G | 9 97 1 1 1 1 97 T | 39 1 1 1 1 1 1
A | -1.27 -3.47 -3.47 -3.47 1.11 1.11 -3.47 C | 0.87 -2.89 1.68 1.68 -2.89 -2.89 -2.89 G | -0.69 1.68 -2.89 -2.89 -2.89 -2.89 1.68 T | 0.20 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47
RIM101_AFoat et. al.P = 7.95e-11View matrix ↘
A | 0.03 0.75 0.23 0.97 0.01 0.02 0.80 0.01 0.09 0.02 0.40 0.01 0.01 0.01 0.52 0.43 0.71 C | 0.24 0.15 0.05 0.01 0.01 0.94 0.01 0.01 0.61 0.07 0.01 0.01 0.01 0.01 0.17 0.01 0.14 G | 0.15 0.01 0.72 0.01 0.01 0.01 0.10 0.01 0.04 0.28 0.58 0.01 0.01 0.97 0.01 0.41 0.14 T | 0.58 0.09 0.01 0.01 0.97 0.04 0.09 0.97 0.26 0.64 0.01 0.97 0.96 0.01 0.30 0.16 0.01
A | 3 75 23 97 1 2 80 1 9 2 40 1 1 1 52 43 71 C | 24 15 5 1 1 94 1 1 61 7 1 1 1 1 17 1 14 G | 15 1 72 1 1 1 10 1 4 28 57 1 1 97 1 41 14 T | 57 9 1 1 97 4 9 97 26 64 1 97 96 1 30 16 1
A | -2.37 0.85 -0.33 1.11 -3.47 -2.77 0.92 -3.47 -1.27 -2.77 0.22 -3.47 -3.47 -3.47 0.49 0.30 0.80 C | 0.29 -0.18 -1.28 -2.89 -2.89 1.65 -2.89 -2.89 1.22 -0.94 -2.89 -2.89 -2.89 -2.89 -0.06 -2.89 -0.25 G | -0.18 -2.89 1.39 -2.89 -2.89 -2.89 -0.59 -2.89 -1.50 0.44 1.17 -2.89 -2.89 1.68 -2.89 0.82 -0.25 T | 0.59 -1.27 -3.47 -3.47 1.11 -2.08 -1.27 1.11 -0.21 0.69 -3.47 1.11 1.10 -3.47 -0.06 -0.69 -3.47
RIM101_BFoat et. al.P = 1View matrix ↘
A | 0.22 0.02 0.07 0.97 0.01 0.08 0.36 0.07 0.43 0.30 0.04 0.65 0.08 0.10 0.10 0.69 0.24 0.09 0.37 0.02 0.17 0.01 0.06 0.01 0.25 0.27 0.37 C | 0.20 0.45 0.48 0.01 0.96 0.01 0.04 0.11 0.32 0.24 0.39 0.21 0.15 0.68 0.45 0.01 0.28 0.60 0.36 0.30 0.21 0.01 0.20 0.07 0.19 0.20 0.01 G | 0.03 0.23 0.35 0.01 0.02 0.06 0.44 0.50 0.17 0.15 0.23 0.08 0.74 0.01 0.14 0.27 0.01 0.20 0.12 0.28 0.37 0.15 0.06 0.92 0.47 0.28 0.05 T | 0.55 0.30 0.11 0.01 0.01 0.85 0.16 0.31 0.09 0.30 0.34 0.05 0.02 0.21 0.31 0.03 0.48 0.12 0.15 0.39 0.25 0.83 0.69 0.01 0.09 0.25 0.57
A | 22 2 7 97 1 8 36 7 43 30 4 65 8 10 10 69 24 9 37 2 17 1 6 1 25 27 37 C | 20 45 48 1 96 1 4 11 32 24 39 21 15 68 45 1 28 60 36 30 21 1 20 7 19 20 1 G | 3 23 35 1 2 6 44 50 17 15 23 8 74 1 14 27 1 20 12 28 37 15 6 92 47 28 5 T | 55 30 11 1 1 85 16 31 9 30 34 5 2 21 31 3 48 12 15 39 25 83 69 1 9 25 56
A | -0.37 -2.77 -1.52 1.11 -3.47 -1.39 0.12 -1.52 0.30 -0.06 -2.08 0.71 -1.39 -1.16 -1.16 0.77 -0.29 -1.27 0.15 -2.77 -0.63 -3.47 -1.67 -3.47 -0.25 -0.17 0.15 C | 0.11 0.92 0.98 -2.89 1.67 -2.89 -1.50 -0.49 0.58 0.29 0.77 0.15 -0.18 1.33 0.92 -2.89 0.44 1.20 0.69 0.51 0.15 -2.89 0.11 -0.94 0.05 0.11 -2.89 G | -1.79 0.25 0.66 -2.89 -2.20 -1.10 0.89 1.02 -0.06 -0.18 0.25 -0.81 1.41 -2.89 -0.25 0.41 -2.89 0.11 -0.41 0.44 0.72 -0.18 -1.10 1.63 0.96 0.44 -1.28 T | 0.54 -0.06 -1.07 -3.47 -3.47 0.98 -0.69 -0.03 -1.27 -0.06 0.06 -1.86 -2.77 -0.42 -0.03 -2.37 0.41 -0.98 -0.76 0.20 -0.25 0.95 0.77 -3.47 -1.27 -0.25 0.58
RIM101_CFoat et. al.P = 1View matrix ↘
A | 0.49 0.34 0.10 0.04 0.97 0.26 0.06 0.22 0.29 0.39 0.10 0.07 0.05 0.31 0.17 0.18 0.22 0.84 0.01 0.01 0.05 0.39 0.44 C | 0.23 0.16 0.88 0.91 0.01 0.01 0.01 0.44 0.25 0.01 0.14 0.25 0.34 0.15 0.28 0.37 0.27 0.01 0.14 0.01 0.01 0.23 0.01 G | 0.02 0.14 0.01 0.04 0.01 0.53 0.66 0.07 0.40 0.07 0.29 0.21 0.29 0.45 0.14 0.21 0.44 0.08 0.84 0.03 0.21 0.04 0.30 T | 0.25 0.35 0.01 0.01 0.01 0.21 0.27 0.27 0.06 0.54 0.46 0.47 0.32 0.09 0.41 0.25 0.06 0.08 0.01 0.95 0.73 0.34 0.24
A | 49 34 10 4 97 26 6 22 28 39 10 7 5 31 17 18 22 84 1 1 5 39 44 C | 23 16 88 91 1 1 1 44 25 1 14 25 34 15 28 37 27 1 14 1 1 23 1 G | 2 14 1 4 1 53 66 7 40 7 28 21 28 45 14 21 44 8 84 3 21 4 30 T | 25 35 1 1 1 21 27 27 6 54 46 47 32 9 41 25 6 8 1 95 73 34 24
A | 0.43 0.06 -1.16 -2.08 1.11 -0.21 -1.67 -0.37 -0.10 0.20 -1.16 -1.52 -1.86 -0.03 -0.63 -0.58 -0.37 0.97 -3.47 -3.47 -1.86 0.20 0.32 C | 0.25 -0.12 1.59 1.62 -2.89 -2.89 -2.89 0.89 0.33 -2.89 -0.25 0.33 0.64 -0.18 0.44 0.72 0.41 -2.89 -0.25 -2.89 -2.89 0.25 -2.89 G | -2.20 -0.25 -2.89 -1.50 -2.89 1.08 1.30 -0.94 0.80 -0.94 0.48 0.15 0.48 0.92 -0.25 0.15 0.89 -0.81 1.54 -1.79 0.15 -1.50 0.51 T | -0.25 0.09 -3.47 -3.47 -3.47 -0.42 -0.17 -0.17 -1.67 0.52 0.36 0.38 0.00 -1.27 0.25 -0.25 -1.67 -1.39 -3.47 1.09 0.82 0.06 -0.29
RIM101Macisaac et. alP = 0.3429View matrix ↘
A | 0.012 0.012 0.012 0.012 0.964 0.964 0.012 C | 0.012 0.012 0.964 0.964 0.012 0.012 0.012 G | 0.012 0.964 0.012 0.012 0.012 0.012 0.964 T | 0.964 0.012 0.012 0.012 0.012 0.012 0.012
A | 1 1 1 1 96 96 1 C | 1 1 96 96 1 1 1 G | 1 96 1 1 1 1 96 T | 96 1 1 1 1 1 1
A | -3.28 -3.28 -3.28 -3.28 1.10 1.10 -3.28 C | -2.71 -2.71 1.68 1.68 -2.71 -2.71 -2.71 G | -2.71 1.68 -2.71 -2.71 -2.71 -2.71 1.68 T | 1.10 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 88 genes
YAL016W, YAL064C-A, YAL065C, YAL067C, YAL068C, YBL059W, YBL068W, YBL070C, YBR201W, YBR298C, YBR299W, YCR018C-A, YCR019W, YDL044C, YDL099W, YDL100C, YDR089W, YDR164C, YDR165W, YDR236C, YDR237W, YDR279W, YDR282C, YDR284C, YDR285W, YDR342C, YDR366C, YDR368W, YDR372C, YDR373W, YDR378C, YDR379W, YDR473C, YER138C, YER183C, YFL011W, YFL041W, YFL042C, YFL043C, YFR023W, YFR037C, YFR038W, YFR039C, YFR040W, YFR044C, YFR045W, YGR066C, YGR088W, YGR126W, YGR184C, YHR086W, YHR087W, YHR132C, YHR138C, YJR154W, YKL071W, YKL177W, YKL179C, YLR012C, YLR013W, YLR105C, YLR114C, YLR115W, YLR308W, YLR453C, YLR454W, YML070W, YMR089C, YMR090W, YMR126C, YMR170C, YMR267W, YNL150W, YNL151C, YOL077W-A, YOL078W, YOL080C, YOL160W, YOR008C-A, YOR009W, YOR106W, YOR251C, YOR252W, YPL186C, YPL189W, YPL190C, YPL238C, YPR197C
Genes affected by TF deletion 275 genes
YER145C, YHL016C, YJR085C, YLR214W, YLR216C, YOR225W, YPL176C, YGL009C, YGL045W, YHR143W, YJL053W, YKL043W, YLR056W, YMR220W, YOR039W, YOR377W, YPL017C, YOR381W, YPL021W, YHL047C, YNL049C, YNR056C, YNR060W, YOL014W, YOR192C, YOR226C, YPL175W, YPL177C, YPL240C, YBR157C, YGL038C, YGL012W, YHR175W, YHR147C, YJL118W, YKL104C, YKL044W, YLR433C, YMR189W, YNL270C, YNL208W, YNL210W, YNL274C, YOR066W, YOR038C, YPL016W, YOR382W, YDR351W, YDR100W, YGR063C, YHR057C, YMR137C, YOL104C, YOL136C, YOR285W, YOR317W, YPL135W, YAR064W, YER026C, YHR208W, YNL333W, YNR026C, YNR028W, YPL112C, YPL084W, YBR067C, YBR129C, YGR060W, YGR064W, YIR033W, YJR113C, YLR304C, YMR136W, YNL180C, YOL109W, YBR288C, YDR309C, YDR281C, YER056C, YER057C, YIL015W, YLR183C, YMR316C-B, YPL141C, YCR046C, YHR005C, YIL088C, YIL156W, YML123C, YNL028W, YNL058C, YNR067C, YOL052C-A, YOR261C, YPL183W-A, YAL044C, YGR130C, YKL084W, YMR173W, YOR043W, YOR075W, YOR045W, YOR079C, YOR389W, YPL160W, YCR049C, YHR004C, YIL117C, YIL121W, YNL057W, YNL029C, YPL246C, YJR148W, YER001W, YGL046W, YLR438W, YMR171C, YDR533C, YLL009C, YLR346C, YLR348C, YNL125C, YOL144W, YOL118C, YPL278C, YPL280W, YPR060C, YHR214W, YML034W, YMR322C, YNR037C, YPL088W, YPL122C, YPL156C, YBR101C, YLR345W, YLR349W, YMR110C, YNL184C, YOL143C, YPL273W, YPL277C, YCL025C, YCL027W, YBR296C, YHR214W-A, YMR317W, YMR319C, YMR321C, YNR036C, YPL091W, YER060W, YKR093W, YMR055C, YML131W, YNR075W, YOL031C, YPL252C, YPL256C, YBR207W, YBR177C, YDR210W, YDR266C, YEL058W, YGR136W, YKL096W, YLR420W, YHL027W, YIL157C, YMR058W, YNL064C, YNL037C, YOL030W, YOR238W, YPL251W, YDR209C, YEL059C-A, YEL060C, YGL028C, YGR137W, YHR193C, YKL120W, YMR173W-A, YFL059W, YGR019W, YLR356W, YOL152W, YOL122C, YOL158C, YPR004C, YOR383C, YGR234W, YLR136C, YMR272C, YMR304C-A, YPL098C, YBR083W, YDR174W, YDR115W, YFL027C, YOL155C, YPR061C, YDL241W, YGR261C, YIL029C, YJL196C, YKL216W, YMR297W, YNR044W, YDR032C, YHL004W, YHR018C, YHL040C, YKR065C, YKR097W, YMR006C, YPL229W, YAL062W, YBR183W, YBR185C, YDR270W, YEL065W, YEL040W, YGR144W, YGR117C, YJL143W, YLR050C, YMR186W, YOR027W, YPL072W, YCR005C, YDR453C, YGL255W, YJR075W, YLR237W, YMR034C, YNL070W, YPL259C, YPL234C, YBR244W, YBR182C, YGL032C, YGR143W, YJL076W, YLR049C, YLR113W, YLR421C, YLR452C, YLR427W, YMR211W, YMR243C, YMR246W, YNL264C, YOR090C, YPL075W, YGR057C, YKL035W, YLL052C, YOR375C, YIL070C, YKL192C, YMR305C, YNR055C, YPL172C, YDL022W, YGR086C, YLL053C, YOL101C, YOR306C, YER073W, YGR235C, YJL200C, YML049C, YNR017W, YPL169C