← All factors / TF RECORD
REI1
YBR267W
Cytoplasmic pre-60S factor; required for the correct recycling of shuttling factors Alb1, Arx1 and Tif6 at the end of the ribosomal large subunit biogenesis; involved in bud growth in the mitotic signaling network
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content12.05
Max PWM score9.95
Recommended cutoff7.46
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.05 0.01 0.01 0.01 0.01 0.56 C | 0.93 0.93 0.97 0.97 0.01 0.01 0.08 G | 0.01 0.01 0.01 0.01 0.01 0.93 0.23 T | 0.05 0.01 0.01 0.01 0.97 0.05 0.13
Position count matrix (PCM)
A | 1 5 1 1 1 1 56 C | 93 93 97 97 1 1 8 G | 1 1 1 1 1 93 23 T | 5 1 1 1 97 5 13
Position weight matrix (PWM)
A | -3.47 -1.86 -3.47 -3.47 -3.47 -3.47 0.56 C | 1.64 1.64 1.68 1.68 -2.89 -2.89 -0.81 G | -2.89 -2.89 -2.89 -2.89 -2.89 1.64 0.25 T | -1.86 -3.47 -3.47 -3.47 1.11 -1.86 -0.90
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 1
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
REI1Foat et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content15.77
Max PWM score18.75
Recommended cutoff14.06
Position frequency matrix (PFM)
A | 0.28 0.24 0.20 0.01 0.82 0.01 0.12 0.47 0.24 0.40 0.47 0.13 0.01 0.71 0.08 0.11 0.36 0.01 0.09 0.94 0.11 C | 0.55 0.04 0.43 0.01 0.06 0.95 0.10 0.19 0.33 0.24 0.12 0.13 0.80 0.04 0.29 0.14 0.33 0.06 0.01 0.01 0.43 G | 0.01 0.63 0.36 0.05 0.01 0.01 0.69 0.01 0.03 0.23 0.01 0.28 0.11 0.15 0.10 0.27 0.22 0.90 0.01 0.01 0.04 T | 0.16 0.09 0.01 0.93 0.12 0.02 0.10 0.34 0.40 0.12 0.41 0.46 0.08 0.11 0.53 0.48 0.09 0.02 0.90 0.04 0.42
Position count matrix (PCM)
A | 28 24 20 1 82 1 12 47 24 40 47 13 1 71 8 11 36 1 9 94 11 C | 55 4 43 1 6 95 10 19 33 24 12 13 80 4 28 14 33 6 1 1 43 G | 1 63 36 5 1 1 69 1 3 23 1 28 11 15 10 27 22 90 1 1 4 T | 16 9 1 93 12 2 10 34 40 12 41 46 8 11 53 48 9 2 90 4 42
Position weight matrix (PWM)
A | -0.13 -0.29 -0.47 -3.47 0.94 -3.47 -0.98 0.38 -0.29 0.22 0.38 -0.90 -3.47 0.80 -1.39 -1.07 0.12 -3.47 -1.27 1.08 -1.07 C | 1.12 -1.50 0.87 -2.89 -1.10 1.66 -0.59 0.05 0.61 0.29 -0.41 -0.33 1.49 -1.50 0.48 -0.25 0.61 -1.10 -2.89 -2.89 0.87 G | -2.89 1.25 0.69 -1.28 -2.89 -2.89 1.34 -2.89 -1.79 0.25 -2.89 0.44 -0.49 -0.18 -0.59 0.41 0.20 1.61 -2.89 -2.89 -1.50 T | -0.69 -1.27 -3.47 1.07 -0.98 -2.77 -1.16 0.06 0.22 -0.98 0.25 0.36 -1.39 -1.07 0.50 0.41 -1.27 -2.77 1.03 -2.08 0.27
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data