S.ScerTFYeast transcription factor database Aaron Spivak
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RDS2

YPL133C

View at SGD ↗

Zinc cluster transcriptional activator involved in conferring resistance to ketoconazole

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Zhao and Stormo
Fisher’s P-value0.0002909
Information content7.28
Max PWM score6.64
Recommended cutoff4.51
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.052 0.024 0.001 0.001 0.689 
C | 0.438 0.904 0.982 0.014 0.107 
G | 0.054 0.051 0.016 0.953 0.079 
T | 0.456 0.021 0.001 0.032 0.125
Position count matrix (PCM)
A |   5   2   0   0  68 
C |  43  90  98   1  10 
G |   5   5   1  95   7 
T |  45   2   0   3  12
Position weight matrix (PWM)
A | -1.82 -2.59 -5.77 -5.77  0.77 
C |  0.89  1.61  1.70 -2.55 -0.52 
G | -1.20 -1.26 -2.42  1.67 -0.82 
T |  0.35 -2.72 -5.77 -2.30 -0.94
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 2

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

RDS2Badis et. al.P = 0.1027View matrix ↘
Sequence logo for RDS2
Fisher’s P-value0.1027
Information content10.68
Max PWM score9.05
Recommended cutoff4.54
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.12 0.17 
C | 0.01 0.97 0.01 0.01 0.01 0.07 
G | 0.01 0.01 0.97 0.97 0.86 0.69 
T | 0.97 0.01 0.01 0.01 0.01 0.07
Position count matrix (PCM)
A |   1   1   1   1  12  17 
C |   1  97   1   1   1   7 
G |   1   1  97  97  86  69 
T |  97   1   1   1   1   7
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -0.98 -0.63 
C | -2.89  1.68 -2.89 -2.89 -2.89 -0.94 
G | -2.89 -2.89  1.68  1.68  1.56  1.34 
T |  1.11 -3.47 -3.47 -3.47 -3.47 -1.52
Badis et. al.
RDS2Zhu et. al.P = 0.02804View matrix ↘
Sequence logo for RDS2
Fisher’s P-value0.02804
Information content10.85
Max PWM score10.42
Recommended cutoff5.24
Position frequency matrix (PFM)
A | 0.67 0.77 0.80 0.57 0.01 0.01 0.01 0.01 0.95 
C | 0.06 0.03 0.06 0.08 0.60 0.96 0.95 0.01 0.02 
G | 0.14 0.10 0.03 0.05 0.01 0.02 0.03 0.97 0.01 
T | 0.13 0.10 0.10 0.30 0.38 0.01 0.01 0.01 0.02
Position count matrix (PCM)
A |  67  77  80  56   1   1   1   1  95 
C |   6   3   6   8  60  96  95   1   2 
G |  14  10   3   5   1   2   3  97   1 
T |  13  10  10  30  38   1   1   1   2
Position weight matrix (PWM)
A |  0.74  0.88  0.92  0.58 -3.47 -3.47 -3.47 -3.47  1.09 
C | -1.10 -1.79 -1.10 -0.81  1.20  1.67  1.66 -2.89 -2.20 
G | -0.25 -0.59 -1.79 -1.28 -2.89 -2.20 -1.79  1.68 -2.89 
T | -0.90 -1.16 -1.16 -0.06  0.17 -3.47 -3.47 -3.47 -2.77
Zhu et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 158 genes

YCR040W, YGR280C, YKR012C, YOR225W, YDL131W, YFR032C-A, YGL009C, YHR143W, YMR194W, YPL049C, YBR031W, YGR279C, YKR042W, YKR013W, YMR044W, YOR226C, YDL061C, YHR143W-A, YJL052W, YOR382W, YHR053C, YHR025W, YIR034C, YLR374C, YMR071C, YNL147W, YNL149C, YOR347C, YOR351C, YPL187W, YHR208W, YOR159C, YBR091C, YDR461W, YHR021C, YJR117W, YLR339C, YNL110C, YNL146W, YBL026W, YCL012W, YCL018W, YDL191W, YDR281C, YIL015W, YLR185W, YML055W, YDR378C, YJR094W-A, YLR287C-A, YNL030W, YPL247C, YDL133C-A, YDL136W, YLR439W, YMR230W, YOR045W, YBR009C, YDR077W, YER154W, YNL027W, YAL012W, YDL075W, YEL021W, YGR037C, YLR348C, YOL144W, YOR293W, YOR357C, YKL209C, YKL178C, YMR260C, YBR105C, YDR475C, YLR343W, YLR349W, YMR081C, YNL150W, YOL143C, YIL027C, YKL177W, YDR086C, YER131W, YHR010W, YKR057W, YLR234W, YNL065W, YOR239W, YHR190W, YLR040C, YLR420W, YNL259C, YOR393W, YCL066W, YDR447C, YHR005C-A, YML126C, YOR210W, YDL081C, YKL120W, YLR041W, YLR043C, YOR020C, YOR084W, YCR097W, YFL026W, YHR072W-A, YKL030W, YLR388W, YOL126C, YPR062W, YDR322C-A, YGL089C, YGL121C, YGL093W, YBR145W, YKL029C, YNL162W, YPL281C, YDL239C, YJR004C, YKL216W, YKL156W, YNR044W, YNL322C, YDR056C, YLR303W, YOR247W, YAL033W, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YBR053C, YCR028C-A, YLR302C, YNL070W, YOR248W, YGL032C, YGR118W, YLR051C, YLR421C, YFL037W, YJR135W-A, YLR332W, YDL184C, YJR009C, YKL164C, YLR180W, YML108W, YDR485C, YBL018C, YGR209C, YML081C-A, YOR182C, YPL133C, YPR176C

Predicted TF–TF partners 5 genes

GIS1, RGM1, STB4, STB5, USV1

Explore 5 original interaction plots →