RDR1
YOR380W
Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.02 0.01 0.01 0.01 0.81 0.34 0.79 C | 0.10 0.97 0.01 0.01 0.02 0.01 0.07 G | 0.81 0.01 0.97 0.97 0.16 0.02 0.11 T | 0.07 0.01 0.01 0.01 0.01 0.63 0.03
A | 2 1 1 1 81 34 79 C | 10 97 1 1 2 1 7 G | 81 1 97 97 16 2 11 T | 7 1 1 1 1 63 3
A | -2.77 -3.47 -3.47 -3.47 0.93 0.06 0.90 C | -0.59 1.68 -2.89 -2.89 -2.20 -2.89 -0.94 G | 1.50 -2.89 1.68 1.68 -0.12 -2.20 -0.49 T | -1.52 -3.47 -3.47 -3.47 -3.47 0.68 -2.37
Alternative candidate matrices 3
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
RDR1Badis et. al.P = 0.04357View matrix ↘
A | 0.25 0.01 0.01 0.01 0.01 0.97 0.84 C | 0.11 0.01 0.97 0.01 0.01 0.01 0.01 G | 0.11 0.97 0.01 0.97 0.97 0.01 0.01 T | 0.53 0.01 0.01 0.01 0.01 0.01 0.14
A | 25 1 1 1 1 97 84 C | 11 1 97 1 1 1 1 G | 11 97 1 97 97 1 1 T | 53 1 1 1 1 1 14
A | -0.25 -3.47 -3.47 -3.47 -3.47 1.11 0.97 C | -0.49 -2.89 1.68 -2.89 -2.89 -2.89 -2.89 G | -0.49 1.68 -2.89 1.68 1.68 -2.89 -2.89 T | 0.50 -3.47 -3.47 -3.47 -3.47 -3.47 -0.83
RDR1Foat et. al.P = 0.001636View matrix ↘
A | 0.25 0.27 0.01 0.01 0.08 0.93 0.78 0.02 0.01 0.13 0.02 0.01 0.97 0.97 0.26 0.01 0.04 C | 0.15 0.17 0.31 0.02 0.01 0.01 0.18 0.15 0.35 0.01 0.50 0.93 0.01 0.01 0.39 0.32 0.59 G | 0.55 0.27 0.67 0.24 0.90 0.03 0.03 0.81 0.41 0.20 0.38 0.05 0.01 0.01 0.35 0.42 0.35 T | 0.04 0.29 0.01 0.73 0.01 0.03 0.01 0.02 0.22 0.67 0.10 0.01 0.01 0.01 0.01 0.26 0.02
A | 25 27 1 1 8 93 78 2 1 13 2 1 97 97 26 1 4 C | 15 17 31 2 1 1 18 15 35 1 50 93 1 1 39 32 59 G | 55 27 67 24 90 3 3 81 41 20 38 5 1 1 35 42 35 T | 4 28 1 73 1 3 1 2 22 67 10 1 1 1 1 26 2
A | -0.25 -0.17 -3.47 -3.47 -1.39 1.07 0.89 -2.77 -3.47 -0.90 -2.77 -3.47 1.11 1.11 -0.21 -3.47 -2.08 C | -0.18 -0.06 0.54 -2.20 -2.89 -2.89 0.00 -0.18 0.66 -2.89 1.02 1.64 -2.89 -2.89 0.77 0.58 1.19 G | 1.12 0.41 1.31 0.29 1.61 -1.79 -1.79 1.50 0.82 0.11 0.75 -1.28 -2.89 -2.89 0.66 0.85 0.66 T | -2.08 -0.10 -3.47 0.82 -3.47 -2.37 -3.47 -2.77 -0.37 0.74 -1.16 -3.47 -3.47 -3.47 -3.47 -0.21 -2.77
RDR1Zhao and StormoP = 0.2651View matrix ↘
A | 0.142 0.028 0.006 0.001 0.513 C | 0.195 0.859 0.028 0.028 0.129 G | 0.489 0.048 0.965 0.970 0.279 T | 0.175 0.066 0.001 0.001 0.080
A | 14 2 0 0 51 C | 19 85 2 2 12 G | 48 4 96 97 27 T | 17 6 0 0 8
A | -0.81 -2.44 -3.98 -5.77 0.47 C | 0.08 1.56 -1.86 -1.86 -0.33 G | 1.00 -1.32 1.68 1.68 0.44 T | -0.60 -1.58 -5.77 -5.77 -1.39
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 46 genes
YBL050W, YBL051C, YBR120C, YBR156C, YCR099C, YCR100C, YDR365C, YDR365W-A, YDR365W-B, YDR367W, YDR440W, YDR461W, YGR215W, YGR220C, YGR222W, YGR263C, YGR265W, YHR068W, YHR120W, YJL012C, YJL166W, YKL088W, YKL123W, YKL124W, YKL162C, YKL201C, YLR242C, YLR243W, YLR440C, YMR135W-A, YMR177W, YMR209C, YMR210W, YNL010W, YNL011C, YNL021W, YNL022C, YNL145W, YNL164C, YNL290W, YNL291C, YOR215C, YOR378W, YPL052W, YPL053C, YPL267W
Genes affected by TF deletion 65 genes
YML114C, YHR146W, YOR379C, YDR207C, YMR042W, YGR120C, YLR026C, YOR378W, YPL016W, YOR380W, YOL136C, YBR129C, YLL002W, YNL180C, YDR279W, YKL142W, YLR119W, YOR160W, YIL118W, YNL089C, YOR229W, YOR261C, YGR134W, YLR438C-A, YLR412W, YOR075W, YLR225C, YMR023C, YNL090W, YNR066C, YPL216W, YFR041C, YGR161C, YHR120W, YJL124C, YLR099C, YML007W, YMR145C, YNL155W, YOL149W, YNL065W, YLR416C, YNL289W, YOR051C, YPL066W, YLR292C, YNL100W, YDR209C, YDR177W, YKL001C, YOR367W, YNR045W, YOL155C, YJL196C, YER135C, YMR184W, YMR034C, YBR244W, YNL264C, YNL266W, YLR398C, YIL044C, YIL076W, YGR024C, YBR278W
Genes supported by both experiments 2 genes
YHR120W, YOR378W
Predicted TF–TF partners 3 genes
NRG1, RSC3, STB1