PHD1
YKL043W
Transcriptional activator that enhances pseudohyphal growth; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.065 0.490 0.010 0.010 0.010 0.935 0.045 0.260 C | 0.563 0.330 0.070 0.010 0.965 0.010 0.125 0.470 G | 0.291 0.125 0.010 0.970 0.010 0.045 0.280 0.170 T | 0.080 0.055 0.910 0.010 0.015 0.010 0.550 0.100
A | 6 49 1 1 1 93 4 26 C | 56 33 7 1 96 1 12 47 G | 29 12 1 97 1 4 28 17 T | 8 5 91 1 1 1 55 10
A | -1.59 0.43 -3.47 -3.47 -3.47 1.07 -1.96 -0.21 C | 1.14 0.61 -0.94 -2.89 1.68 -2.89 -0.36 0.96 G | 0.48 -0.36 -2.89 1.68 -2.89 -1.39 0.44 -0.06 T | -1.39 -1.76 1.05 -3.47 -3.06 -3.47 0.54 -1.16
Alternative candidate matrices 8
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
PHD1Badis et. al.P = 2.44e-17View matrix ↘
A | 0.09 0.37 0.01 0.01 0.01 0.91 C | 0.43 0.44 0.10 0.01 0.97 0.01 G | 0.39 0.15 0.01 0.97 0.01 0.07 T | 0.08 0.03 0.88 0.01 0.01 0.01
A | 9 37 1 1 1 91 C | 43 44 10 1 97 1 G | 39 15 1 97 1 7 T | 8 3 88 1 1 1
A | -1.27 0.15 -3.47 -3.47 -3.47 1.05 C | 0.87 0.89 -0.59 -2.89 1.68 -2.89 G | 0.77 -0.18 -2.89 1.68 -2.89 -0.94 T | -1.39 -2.37 1.01 -3.47 -3.47 -3.47
PHD1_AFoat et. al.P = 1View matrix ↘
A | 0.02 0.24 0.06 0.01 0.07 0.02 0.23 0.28 0.62 0.36 0.26 0.13 0.27 0.12 0.62 0.17 0.31 0.33 0.33 0.10 0.01 0.01 0.71 C | 0.05 0.29 0.01 0.97 0.08 0.86 0.10 0.13 0.14 0.28 0.01 0.47 0.21 0.44 0.01 0.45 0.01 0.24 0.19 0.18 0.07 0.01 0.05 G | 0.22 0.42 0.93 0.01 0.01 0.01 0.21 0.33 0.11 0.02 0.30 0.06 0.13 0.44 0.27 0.20 0.07 0.20 0.36 0.01 0.01 0.96 0.22 T | 0.70 0.05 0.01 0.01 0.84 0.12 0.46 0.27 0.13 0.34 0.43 0.34 0.38 0.01 0.10 0.17 0.62 0.23 0.12 0.71 0.91 0.02 0.01
A | 2 24 6 1 7 2 23 28 62 36 26 13 27 12 62 17 31 33 33 10 1 1 71 C | 5 28 1 97 8 86 10 13 14 28 1 47 21 44 1 45 1 24 19 18 7 1 5 G | 22 42 93 1 1 1 21 33 11 2 30 6 13 44 27 20 7 20 36 1 1 96 22 T | 70 5 1 1 84 12 46 27 13 34 43 34 38 1 10 17 62 23 12 71 91 2 1
A | -2.77 -0.29 -1.67 -3.47 -1.52 -2.77 -0.33 -0.13 0.66 0.12 -0.21 -0.90 -0.17 -0.98 0.66 -0.63 -0.03 0.03 0.03 -1.16 -3.47 -3.47 0.80 C | -1.28 0.48 -2.89 1.68 -0.81 1.56 -0.59 -0.33 -0.25 0.44 -2.89 0.96 0.15 0.89 -2.89 0.92 -2.89 0.29 0.05 0.00 -0.94 -2.89 -1.28 G | 0.20 0.85 1.64 -2.89 -2.89 -2.89 0.15 0.61 -0.49 -2.20 0.51 -1.10 -0.33 0.89 0.41 0.11 -0.94 0.11 0.69 -2.89 -2.89 1.67 0.20 T | 0.78 -1.86 -3.47 -3.47 0.97 -0.98 0.36 -0.17 -0.90 0.06 0.30 0.06 0.17 -3.47 -1.16 -0.63 0.66 -0.33 -0.98 0.80 1.05 -2.77 -3.47
PHD1_BFoat et. al.P = 0.2826View matrix ↘
A | 0.46 0.01 0.45 0.90 0.08 0.04 0.28 0.45 0.25 0.03 0.14 0.02 0.01 0.01 0.13 0.84 0.19 C | 0.53 0.35 0.01 0.04 0.01 0.94 0.30 0.01 0.44 0.01 0.36 0.15 0.09 0.01 0.01 0.04 0.43 G | 0.01 0.20 0.17 0.05 0.05 0.01 0.11 0.01 0.26 0.85 0.47 0.01 0.01 0.97 0.76 0.04 0.37 T | 0.01 0.44 0.36 0.01 0.86 0.01 0.30 0.53 0.05 0.12 0.03 0.83 0.90 0.01 0.10 0.09 0.01
A | 46 1 45 90 8 4 28 45 25 3 14 2 1 1 13 84 19 C | 53 35 1 4 1 94 30 1 44 1 36 15 9 1 1 4 43 G | 1 20 17 5 5 1 11 1 26 85 47 1 1 97 76 4 37 T | 1 44 36 1 86 1 30 53 5 12 3 83 90 1 10 9 1
A | 0.36 -3.47 0.34 1.03 -1.39 -2.08 -0.13 0.34 -0.25 -2.37 -0.83 -2.77 -3.47 -3.47 -0.90 0.97 -0.52 C | 1.08 0.66 -2.89 -1.50 -2.89 1.65 0.51 -2.89 0.89 -2.89 0.69 -0.18 -0.69 -2.89 -2.89 -1.50 0.87 G | -2.89 0.11 -0.06 -1.28 -1.28 -2.89 -0.49 -2.89 0.37 1.55 0.96 -2.89 -2.89 1.68 1.44 -1.50 0.72 T | -3.47 0.32 0.12 -3.47 0.99 -3.47 -0.06 0.50 -1.86 -0.98 -2.37 0.95 1.03 -3.47 -1.16 -1.27 -3.47
PHD1_CFoat et. al.P = 1.20e-15View matrix ↘
A | 0.01 0.13 0.81 0.77 0.01 0.01 0.01 0.97 0.12 0.51 0.01 0.25 C | 0.70 0.10 0.05 0.22 0.12 0.17 0.64 0.01 0.86 0.01 0.54 0.01 G | 0.15 0.67 0.10 0.01 0.86 0.76 0.34 0.01 0.01 0.19 0.45 0.58 T | 0.15 0.10 0.05 0.01 0.02 0.06 0.01 0.01 0.01 0.30 0.01 0.16
A | 1 13 81 77 1 1 1 97 12 51 1 25 C | 70 10 5 22 12 17 64 1 86 1 54 1 G | 15 67 10 1 86 76 34 1 1 19 45 57 T | 15 10 5 1 2 6 1 1 1 30 1 16
A | -3.47 -0.90 0.93 0.88 -3.47 -3.47 -3.47 1.11 -0.98 0.47 -3.47 -0.25 C | 1.36 -0.59 -1.28 0.20 -0.41 -0.06 1.27 -2.89 1.56 -2.89 1.10 -2.89 G | -0.18 1.31 -0.59 -2.89 1.56 1.44 0.64 -2.89 -2.89 0.05 0.92 1.17 T | -0.76 -1.16 -1.86 -3.47 -2.77 -1.67 -3.47 -3.47 -3.47 -0.06 -3.47 -0.69
PHD1Harbison et. al.P = 5.66e-20View matrix ↘
A | 0.004 0.108 0.150 0.003 0.044 0.502 0.010 0.060 C | 0.475 0.719 0.294 0.032 0.941 0.117 0.151 0.135 G | 0.489 0.142 0.154 0.943 0.011 0.269 0.699 0.782 T | 0.030 0.030 0.401 0.020 0.003 0.112 0.139 0.021
A | 0 10 15 0 4 50 1 6 C | 47 71 29 3 94 11 15 13 G | 48 14 15 94 1 26 69 78 T | 3 3 40 2 0 11 13 2
A | -4.38 -1.09 -0.76 -4.67 -1.98 0.45 -3.47 -1.67 C | 0.97 1.38 0.49 -1.73 1.65 -0.43 -0.18 -0.29 G | 1.00 -0.24 -0.16 1.66 -2.80 0.40 1.36 1.47 T | -2.37 -2.37 0.23 -2.77 -4.67 -1.05 -0.83 -2.72
PHD1Macisaac et. alP = 3.89e-18View matrix ↘
A | 0.734 0.074 0.082 0.227 0.939 0.339 C | 0.008 0.001 0.001 0.676 0.001 0.640 G | 0.257 0.924 0.916 0.037 0.059 0.019 T | 0.001 0.001 0.001 0.060 0.001 0.002
A | 73 7 8 22 93 33 C | 0 0 0 67 0 64 G | 25 92 91 3 5 1 T | 0 0 0 6 0 0
A | 0.83 -1.46 -1.36 -0.34 1.08 0.06 C | -3.11 -5.19 -5.19 1.32 -5.19 1.27 G | 0.36 1.64 1.63 -1.58 -1.12 -2.25 T | -5.77 -5.77 -5.77 -1.67 -5.77 -5.08
PHD1Zhu et. al.P = 0.0003297View matrix ↘
A | 0.40 0.31 0.17 0.16 0.51 0.30 0.04 0.61 0.01 0.01 0.01 0.96 0.01 0.30 0.62 0.32 0.24 0.29 0.33 0.27 0.13 C | 0.10 0.15 0.15 0.13 0.15 0.26 0.69 0.22 0.04 0.01 0.96 0.01 0.03 0.52 0.08 0.32 0.24 0.23 0.22 0.21 0.15 G | 0.42 0.39 0.42 0.45 0.17 0.33 0.19 0.10 0.01 0.97 0.01 0.02 0.20 0.12 0.10 0.21 0.41 0.40 0.12 0.30 0.61 T | 0.08 0.15 0.26 0.26 0.18 0.12 0.08 0.08 0.95 0.01 0.02 0.01 0.76 0.06 0.19 0.15 0.11 0.09 0.33 0.22 0.12
A | 40 31 17 16 51 30 4 61 1 1 1 96 1 30 62 32 24 28 33 27 13 C | 10 15 15 13 15 26 69 22 4 1 96 1 3 52 8 32 24 23 22 21 15 G | 42 39 42 45 17 33 19 10 1 97 1 2 20 12 10 21 41 40 12 30 61 T | 8 15 26 26 18 12 8 8 95 1 2 1 76 6 19 15 11 9 33 22 12
A | 0.22 -0.03 -0.63 -0.69 0.47 -0.06 -2.08 0.65 -3.47 -3.47 -3.47 1.10 -3.47 -0.06 0.66 0.00 -0.29 -0.10 0.03 -0.17 -0.90 C | -0.59 -0.18 -0.18 -0.33 -0.18 0.37 1.34 0.20 -1.50 -2.89 1.67 -2.89 -1.79 1.06 -0.81 0.58 0.29 0.25 0.20 0.15 -0.18 G | 0.85 0.77 0.85 0.92 -0.06 0.61 0.05 -0.59 -2.89 1.68 -2.89 -2.20 0.11 -0.41 -0.59 0.15 0.82 0.80 -0.41 0.51 1.22 T | -1.39 -0.76 -0.21 -0.21 -0.58 -0.98 -1.39 -1.39 1.09 -3.47 -2.77 -3.47 0.86 -1.67 -0.52 -0.76 -1.07 -1.27 0.03 -0.37 -0.98
PHD1Zhao and StormoP = 5.75e-21View matrix ↘
A | 0.146 0.231 0.002 0.060 0.001 0.886 0.001 0.224 C | 0.479 0.308 0.123 0.001 0.997 0.009 0.006 0.498 G | 0.207 0.318 0.010 0.937 0.001 0.059 0.291 0.174 T | 0.169 0.143 0.865 0.002 0.001 0.046 0.702 0.105
A | 14 23 0 6 0 88 0 22 C | 47 30 12 0 99 0 0 49 G | 20 31 1 93 0 5 29 17 T | 16 14 86 0 0 4 70 10
A | -0.78 -0.33 -5.08 -1.67 -5.77 1.02 -5.77 -0.36 C | 0.98 0.54 -0.38 -5.19 1.71 -3.00 -3.40 1.02 G | 0.14 0.57 -2.89 1.65 -5.19 -1.12 0.48 -0.03 T | -0.64 -0.81 0.99 -5.08 -5.77 -1.94 0.79 -1.11
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 166 genes
YAL002W, YAL063C, YAL064W, YAR050W, YBL025W, YBL029W, YBL030C, YBL069W, YBL071C, YBR069C, YBR080C, YBR157C, YBR158W, YBR159W, YBR162C, YBR162W-A, YCL024W, YCL025C, YCL045C, YCR064C, YCR065W, YCR098C, YCR099C, YCR100C, YDL016C, YDL034W, YDL036C, YDL037C, YDL047W, YDL092W, YDL094C, YDL095W, YDL097C, YDL214C, YDL245C, YDR010C, YDR011W, YDR210W-D, YDR261C, YDR309C, YDR343C, YDR441C, YDR442W, YDR451C, YDR452W, YDR513W, YEL007W, YEL038W, YEL039C, YEL040W, YEL066W, YEL068C, YEL069C, YEL070W, YEL073C, YEL074W, YEL075C, YEL076C, YEL076C-A, YEL076W-C, YEL077C, YER033C, YER034W, YER045C, YER145C, YER146W, YFL026W, YFL027C, YFL062W, YGL156W, YGR140W, YGR200C, YGR249W, YGR251W, YGR279C, YHL024W, YHL028W, YHL029C, YHL039W, YHL040C, YHR005C, YHR136C, YHR137W, YHR170W, YHR213W, YIL010W, YIL012W, YIL013C, YIL099W, YIL118W, YIL120W, YIL132C, YIL170W, YIL171W, YIL172C, YIL173W, YIL174W, YIL175W, YIR020C, YJL076W, YJL077C, YJL079C, YJL105W, YJL138C, YJL217W, YJL218W, YJL219W, YJL221C, YJR094C, YJR095W, YJR127C, YJR158W, YJR159W, YKL058W, YKL059C, YKL062W, YKL063C, YKL108W, YKL109W, YKL110C, YKR102W, YLL028W, YLL063C, YLR004C, YLR005W, YLR044C, YLR046C, YML115C, YML116W, YML131W, YMR004W, YMR011W, YMR015C, YMR016C, YMR017W, YMR018W, YMR019W, YMR020W, YMR135C, YMR136W, YMR137C, YMR138W, YMR195W, YMR265C, YMR266W, YNL145W, YNL178W, YNL332W, YNL335W, YOL154W, YOR107W, YOR161C, YOR179C, YOR355W, YPL024W, YPL025C, YPL081W, YPL082C, YPL177C, YPL230W, YPL265W, YPL283C, YPR013C, YPR065W, YPR202W, YPR203W
Genes affected by TF deletion 110 genes
YCR040W, YIL082W-A, YML112W, YOL047C, YGL009C, YKL043W, YGR279C, YHL047C, YIL082W, YJR053W, YKR038C, YKR042W, YKR013W, YLR279W, YMR044W, YOR226C, YDR193W, YDR221W, YFR035C, YHR143W-A, YHR116W, YOR382W, YER011W, YCR079W, YFR005C, YIR034C, YJR116W, YOR351C, YPL187W, YER026C, YHR208W, YML085C, YBR067C, YDR461W, YNL146W, YOL073C, YPR013C, YPR015C, YCL018W, YER083C, YIL015W, YML055W, YNL300W, YPL219W, YMR230W, YMR202W, YNL279W, YER154W, YJR148W, YAL012W, YAL014C, YER001W, YKL118W, YFL018C, YLR348C, YMR139W, YOL144W, YOL086C, YPL195W, YKL209C, YKL178C, YPL120W, YLR343W, YLR349W, YMR081C, YOL111C, YOL143C, YOR221C, YBL032W, YJL158C, YKL177W, YNR032W, YKR093W, YOR239W, YLR040C, YLR042C, YLR420W, YCL066W, YKR086W, YML126C, YAL022C, YKL120W, YLR041W, YOR084W, YCR097W, YFL026W, YOL126C, YOR383C, YGL089C, YOR366W, YJR004C, YKL216W, YNR044W, YNL322C, YPL163C, YLR303W, YOR247W, YEL038W, YPL011C, YLR302C, YOR246C, YOR248W, YAR031W, YGL032C, YDR104C, YOR034C, YER078C, YGR274C, YDR360W, YER073W
Genes supported by both experiments 4 genes
YEL038W, YFL026W, YGR279C, YPR013C
Predicted TF–TF partners 10 genes
DAL82, GIS1, GSM1, MSN2, MSN4, RDS1, SKN7, SUT1, USV1, YER184C