NHP6A

YPR052C

High-mobility group (HMG) protein that binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Bp; homologous to mammalian HMGB1 and HMGB2

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Zhu et. al.

Fisher’s P-valueNo data

Information content6.621

Max PWM score8.36

Recommended cutoff6.26

View and copy the recommended matrices ↘

Position frequency matrix (PFM)

A | 0.10 0.34 0.49 0.11 0.90 0.13 0.85 0.06 0.75 0.65 
C | 0.52 0.13 0.25 0.02 0.01 0.03 0.02 0.04 0.02 0.03 
G | 0.05 0.07 0.06 0.01 0.03 0.01 0.04 0.03 0.02 0.15 
T | 0.33 0.46 0.19 0.85 0.06 0.83 0.09 0.87 0.22 0.17

Position count matrix (PCM)

A |  10  34  49  11  90  13  85   6  75  65 
C |  52  13  25   2   1   3   2   4   2   3 
G |   5   7   6   1   3   1   4   3   2  15 
T |  33  46  19  85   6  83   9  87  22  17

Position weight matrix (PWM)

A | -1.16  0.06  0.43 -1.07  1.03 -0.90  0.98 -1.67  0.85  0.71 
C |  1.06 -0.33  0.33 -2.20 -2.89 -1.79 -2.20 -1.50 -2.20 -1.79 
G | -1.28 -0.94 -1.10 -2.89 -1.79 -2.89 -1.50 -1.79 -2.20 -0.18 
T |  0.03  0.36 -0.52  0.98 -1.67  0.95 -1.27  1.00 -0.37 -0.63

02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

NHP6AZhao and StormoP = No dataView matrix ↘

Fisher’s P-valueNo data

Information content2.09

Max PWM score4.78

Recommended cutoff3.58

Position frequency matrix (PFM)

A | 0.290 0.189 0.695 0.043 0.395 0.480 0.432 0.290 
C | 0.314 0.421 0.034 0.442 0.044 0.117 0.110 0.198 
G | 0.141 0.034 0.222 0.078 0.059 0.142 0.144 0.305 
T | 0.255 0.356 0.049 0.437 0.502 0.261 0.314 0.206

Position count matrix (PCM)

A |  28  18  69   4  39  48  43  28 
C |  31  42   3  44   4  11  11  19 
G |  14   3  22   7   5  14  14  30 
T |  25  35   4  43  50  26  31  20

Position weight matrix (PWM)

A | -0.10 -0.53  0.78 -2.01  0.21  0.41  0.30 -0.10 
C |  0.56  0.85 -1.67  0.90 -1.41 -0.43 -0.49  0.10 
G | -0.24 -1.67  0.21 -0.84 -1.12 -0.24 -0.22  0.53 
T | -0.23  0.11 -1.88  0.31  0.45 -0.20 -0.02 -0.44

Zhao and Stormo

03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 1 genes

No Data

Genes supported by both experiments 1 genes

No Data

Predicted TF–TF partners 1 genes

STB5

Explore 1 original interaction plots →