NHP10

YDL002C, HMO2

Protein related to mammalian high mobility group proteins; preferentially binds DNA ends, protecting them from exonucleatic cleavage; likely component of the chromatin-remodeling complex INO80 complex; proposed to be involved in DNA repair

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Badis et. al.

Fisher’s P-valueNo data

Information content13.34

Max PWM score11.77

Recommended cutoff8.84

View and copy the recommended matrices ↘

Position frequency matrix (PFM)

A | 0.20 0.08 0.01 0.01 0.01 0.01 0.01 0.67 
C | 0.10 0.76 0.97 0.01 0.01 0.01 0.01 0.08 
G | 0.60 0.08 0.01 0.97 0.97 0.97 0.97 0.18 
T | 0.10 0.08 0.01 0.01 0.01 0.01 0.01 0.08

Position count matrix (PCM)

A |  20   8   1   1   1   1   1  67 
C |  10  76  97   1   1   1   1   8 
G |  60   8   1  97  97  97  97  18 
T |  10   8   1   1   1   1   1   8

Position weight matrix (PWM)

A | -0.47 -1.39 -3.47 -3.47 -3.47 -3.47 -3.47  0.74 
C | -0.59  1.44  1.68 -2.89 -2.89 -2.89 -2.89 -0.81 
G |  1.20 -0.81 -2.89  1.68  1.68  1.68  1.68  0.00 
T | -1.16 -1.39 -3.47 -3.47 -3.47 -3.47 -3.47 -1.39

02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 0

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

No additional matrices in the original archive.

03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 1 genes

No Data

Genes supported by both experiments 1 genes

No Data

Predicted TF–TF partners 9 genes

GIS1, HMS1, LYS14, RGM1, RSC3, STP1, STP2, SUT1, USV1

Explore 9 original interaction plots →