S.ScerTFYeast transcription factor database Aaron Spivak
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NDD1

YOR372C

View at SGD ↗

Transcriptional activator essential for nuclear division; localized to the nucleus; essential component of the mechanism that activates the expression of a set of late-S-phase-specific genes

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Harbison et. al.
Fisher’s P-value1.67e-21
Information content11.33
Max PWM score12.25
Recommended cutoff8.75
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.142 0.187 0.211 0.020 0.006 0.242 0.683 0.862 0.435 0.161 0.315 0.041 0.019 
C | 0.116 0.082 0.156 0.912 0.968 0.342 0.089 0.005 0.013 0.219 0.136 0.003 0.024 
G | 0.079 0.156 0.130 0.046 0.007 0.144 0.196 0.008 0.005 0.204 0.354 0.949 0.937 
T | 0.663 0.575 0.502 0.023 0.020 0.271 0.033 0.125 0.547 0.415 0.195 0.006 0.020
Position count matrix (PCM)
A |  14  18  21   2   0  24  68  86  43  16  31   4   1 
C |  11   8  15  91  96  34   8   0   1  21  13   0   2 
G |   7  15  13   4   0  14  19   0   0  20  35  94  93 
T |  66  57  50   2   2  27   3  12  54  41  19   0   2
Position weight matrix (PWM)
A | -0.81 -0.54 -0.42 -2.77 -3.98 -0.28  0.76  0.99  0.31 -0.69 -0.02 -2.05 -2.82 
C | -0.44 -0.79 -0.14  1.62  1.68  0.64 -0.70 -3.58 -2.63  0.20 -0.28 -4.09 -2.01 
G | -0.82 -0.14 -0.33 -1.36 -3.25 -0.22  0.09 -3.11 -3.58  0.13  0.68  1.66  1.65 
T |  0.73  0.59  0.45 -2.63 -2.77 -0.17 -2.27 -0.94  0.54  0.26 -0.50 -3.98 -2.77
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 2

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

NDD1Foat et. al.P = 1.20e-08View matrix ↘
Sequence logo for NDD1
Fisher’s P-value1.20e-08
Information content17.48
Max PWM score15.96
Recommended cutoff10.68
Position frequency matrix (PFM)
A | 0.64 0.01 0.10 0.21 0.04 0.01 0.09 0.15 0.01 0.01 0.05 0.01 0.04 
C | 0.32 0.01 0.01 0.01 0.01 0.01 0.53 0.01 0.01 0.01 0.01 0.65 0.53 
G | 0.01 0.97 0.30 0.78 0.06 0.97 0.01 0.84 0.03 0.95 0.01 0.01 0.42 
T | 0.04 0.01 0.59 0.01 0.89 0.01 0.38 0.01 0.95 0.03 0.94 0.34 0.01
Position count matrix (PCM)
A |  64   1  10  21   4   1   9  15   1   1   5   1   4 
C |  32   1   1   1   1   1  53   1   1   1   1  65  53 
G |   1  97  30  78   6  97   1  84   3  95   1   1  42 
T |   4   1  59   1  89   1  38   1  95   3  94  34   1
Position weight matrix (PWM)
A |  0.69 -3.47 -1.16 -0.42 -2.08 -3.47 -1.27 -0.76 -3.47 -3.47 -1.86 -3.47 -2.08 
C |  0.58 -2.89 -2.89 -2.89 -2.89 -2.89  1.08 -2.89 -2.89 -2.89 -2.89  1.28  1.08 
G | -2.89  1.68  0.51  1.47 -1.10  1.68 -2.89  1.54 -1.79  1.66 -2.89 -2.89  0.85 
T | -2.08 -3.47  0.61 -3.47  1.02 -3.47  0.17 -3.47  1.09 -2.37  1.08  0.06 -3.47
Foat et. al.
NDD1Macisaac et. alP = 1.09e-13View matrix ↘
Sequence logo for NDD1
Fisher’s P-value1.09e-13
Information content9.483
Max PWM score10.06
Recommended cutoff6.5
Position frequency matrix (PFM)
A | 0.677 0.970 0.705 0.463 0.108 0.307 0.017 0.790 0.834 0.884 
C | 0.012 0.001 0.024 0.131 0.016 0.001 0.217 0.151 0.017 0.001 
G | 0.301 0.013 0.130 0.357 0.789 0.691 0.498 0.058 0.143 0.099 
T | 0.010 0.016 0.141 0.049 0.087 0.001 0.269 0.001 0.006 0.016
Position count matrix (PCM)
A |  67  97  70  46  10  30   1  79  83  88 
C |   1   0   2  13   1   0  21  15   1   0 
G |  30   1  13  35  78  69  49   5  14   9 
T |   1   1  14   4   8   0  26   0   0   1
Position weight matrix (PWM)
A |  0.75  1.11  0.79  0.37 -1.09 -0.04 -2.94  0.90  0.96  1.02 
C | -2.71 -5.19 -2.01 -0.32 -2.42 -5.19  0.19 -0.18 -2.36 -5.19 
G |  0.51 -2.63 -0.33  0.68  1.48  1.35  1.02 -1.13 -0.23 -0.60 
T | -3.47 -3.00 -0.82 -1.88 -1.30 -5.77 -0.17 -5.77 -3.98 -3.00
Macisaac et. al
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 190 genes

YAL062W, YAR009C, YAR018C, YBL027W, YBL028C, YBR037C, YBR038W, YBR044C, YBR050C, YBR067C, YBR077C, YBR078W, YBR092C, YBR138C, YBR139W, YBR158W, YBR190W, YBR191W, YBR230C, YCR024C, YCR024C-A, YCR064C, YCR065W, YDL022W, YDL134C, YDR033W, YDR146C, YDR147W, YDR148C, YDR150W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR187C, YDR189W, YDR307W, YDR324C, YDR325W, YDR451C, YDR452W, YDR453C, YDR526C, YEL007W, YEL076W-C, YEL077C, YER008C, YER009W, YER078C, YER079W, YER087C-A, YER136W, YER177W, YER189W, YER190W, YFL021W, YFL022C, YFR017C, YGL007W, YGL008C, YGL021W, YGL114W, YGL116W, YGL135W, YGL136C, YGR013W, YGR014W, YGR060W, YGR085C, YGR092W, YGR109C, YGR109W-A, YGR109W-B, YGR143W, YGR190C, YGR192C, YGR229C, YGR230W, YGR256W, YGR279C, YHL028W, YHL029C, YHR048W, YHR098C, YHR099W, YHR151C, YHR152W, YHR193C, YHR194W, YIL123W, YIL158W, YIL169C, YJL005W, YJL048C, YJL051W, YJL079C, YJL080C, YJL098W, YJL100W, YJL101C, YJL148W, YJL158C, YJL161W, YJR044C, YJR076C, YJR091C, YJR092W, YJR127C, YJR148W, YKL038W, YKL096W-A, YKL097C, YKL150W, YKL151C, YKR040C, YKR042W, YKR043C, YKR044W, YLR035C-A, YLR084C, YLR105C, YLR131C, YLR189C, YLR190W, YLR300W, YLR344W, YLR367W, YLR368W, YLR378C, YLR380W, YLR439W, YML006C, YML028W, YML050W, YML052W, YML053C, YML100W, YML101C, YML102C-A, YML123C, YML125C, YML131W, YMR001C, YMR002W, YMR013C, YMR014W, YMR119W, YMR119W-A, YMR135C, YMR136W, YMR144W, YMR165C, YMR199W, YNL034W, YNL056W, YNL058C, YNL132W, YNL134C, YNL145W, YNL241C, YNL288W, YNL289W, YNR018W, YOR023C, YOR024W, YOR025W, YOR138C, YOR140W, YOR236W, YOR246C, YOR247W, YOR248W, YOR315W, YOR316C, YOR369C, YPL050C, YPL081W, YPL082C, YPL083C, YPL141C, YPL143W, YPL198W, YPR008W, YPR072W, YPR119W, YPR148C, YPR149W, YPR151C, YPR160W

Genes affected by TF deletion 1 genes

No Data

Predicted TF–TF partners 5 genes

FKH1, FKH2, MBP1, MCM1, SWI6

Explore 5 original interaction plots →