← All factors / TF RECORD
MOT2
YER068W, SIG1, NOT4
Subunit of the CCR4-NOT complex, which has roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; with Ubc4p, ubiquitinates nascent polypeptide-associated complex subunits and histone demethyase Jhd2p
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value5.15e-16
Information content13.47
Max PWM score11.5
Recommended cutoff8.05
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.687 0.375 0.001 0.500 0.875 0.500 0.001 0.625 0.750 0.562 0.999 0.937 C | 0.001 0.001 0.001 0.250 0.063 0.001 1.000 0.063 0.001 0.312 0.001 0.001 G | 0.001 0.562 1.000 0.001 0.063 0.001 0.001 0.312 0.001 0.001 0.001 0.001 T | 0.313 0.063 0.001 0.250 0.001 0.500 0.001 0.001 0.250 0.125 0.001 0.063
Position count matrix (PCM)
A | 68 37 0 50 87 50 0 62 75 56 99 93 C | 0 0 0 25 6 0 100 6 0 31 0 0 G | 0 56 100 0 6 0 0 31 0 0 0 0 T | 31 6 0 25 0 50 0 0 25 12 0 6
Position weight matrix (PWM)
A | 0.76 0.16 -5.77 0.45 1.01 0.45 -5.77 0.67 0.85 0.56 1.14 1.07 C | -5.19 -5.19 -5.19 0.33 -1.05 -5.19 1.71 -1.05 -5.19 0.55 -5.19 -5.19 G | -5.19 1.14 1.71 -5.19 -1.05 -5.19 -5.19 0.55 -5.19 -5.19 -5.19 -5.19 T | -0.02 -1.63 -5.77 -0.25 -5.77 0.45 -5.77 -5.77 -0.25 -0.94 -5.77 -1.63
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 3
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
MOT2Badis et. al.P = 0.5577View matrix ↘
Fisher’s P-value0.5577
Information content6.837
Max PWM score5.5
Recommended cutoff5.5
Position frequency matrix (PFM)
A | 0.92 0.01 0.97 0.01 0.97 C | 0.02 0.01 0.01 0.01 0.01 G | 0.01 0.01 0.01 0.01 0.01 T | 0.05 0.97 0.01 0.97 0.01
Position count matrix (PCM)
A | 92 1 97 1 97 C | 2 1 1 1 1 G | 1 1 1 1 1 T | 5 97 1 97 1
Position weight matrix (PWM)
A | 1.06 -3.47 1.11 -3.47 1.11 C | -2.20 -2.89 -2.89 -2.89 -2.89 G | -2.89 -2.89 -2.89 -2.89 -2.89 T | -1.86 1.11 -3.47 1.11 -3.47
MOT2_AFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content19.16
Max PWM score18.44
Recommended cutoff13.83
Position frequency matrix (PFM)
A | 0.41 0.02 0.30 0.01 0.97 0.02 0.03 0.05 0.07 0.97 0.20 0.01 0.01 0.52 0.20 0.06 C | 0.43 0.88 0.36 0.02 0.01 0.01 0.95 0.01 0.11 0.01 0.01 0.11 0.92 0.22 0.01 0.01 G | 0.01 0.09 0.27 0.01 0.01 0.91 0.01 0.01 0.82 0.01 0.01 0.84 0.05 0.05 0.37 0.20 T | 0.14 0.01 0.07 0.96 0.01 0.05 0.01 0.93 0.01 0.01 0.79 0.04 0.02 0.21 0.42 0.73
Position count matrix (PCM)
A | 41 2 30 1 97 2 3 5 7 97 20 1 1 52 20 6 C | 43 88 36 2 1 1 95 1 11 1 1 11 92 22 1 1 G | 1 9 27 1 1 91 1 1 82 1 1 84 5 5 37 20 T | 14 1 7 96 1 5 1 93 1 1 79 4 2 21 42 73
Position weight matrix (PWM)
A | 0.25 -2.77 -0.06 -3.47 1.11 -2.77 -2.37 -1.86 -1.52 1.11 -0.47 -3.47 -3.47 0.49 -0.47 -1.67 C | 0.87 1.59 0.69 -2.20 -2.89 -2.89 1.66 -2.89 -0.49 -2.89 -2.89 -0.49 1.63 0.20 -2.89 -2.89 G | -2.89 -0.69 0.41 -2.89 -2.89 1.62 -2.89 -2.89 1.52 -2.89 -2.89 1.54 -1.28 -1.28 0.72 0.11 T | -0.83 -3.47 -1.52 1.10 -3.47 -1.86 -3.47 1.07 -3.47 -3.47 0.90 -2.08 -2.77 -0.42 0.27 0.82
MOT2_BFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content19.39
Max PWM score18.71
Recommended cutoff14.03
Position frequency matrix (PFM)
A | 0.01 0.21 0.39 0.01 0.97 0.01 0.35 0.01 0.26 0.97 0.16 0.02 0.01 0.91 0.02 0.32 0.54 C | 0.77 0.11 0.08 0.97 0.01 0.05 0.42 0.34 0.02 0.01 0.20 0.96 0.87 0.07 0.60 0.29 0.01 G | 0.21 0.26 0.08 0.01 0.01 0.93 0.01 0.01 0.71 0.01 0.64 0.01 0.01 0.01 0.01 0.01 0.42 T | 0.01 0.42 0.45 0.01 0.01 0.01 0.22 0.64 0.01 0.01 0.01 0.02 0.11 0.01 0.37 0.39 0.03
Position count matrix (PCM)
A | 1 21 39 1 97 1 35 1 26 97 16 2 1 91 2 32 54 C | 77 11 8 97 1 5 42 34 2 1 20 96 87 7 60 28 1 G | 21 26 8 1 1 93 1 1 71 1 64 1 1 1 1 1 42 T | 1 42 45 1 1 1 22 64 1 1 1 2 11 1 37 39 3
Position weight matrix (PWM)
A | -3.47 -0.42 0.20 -3.47 1.11 -3.47 0.09 -3.47 -0.21 1.11 -0.69 -2.77 -3.47 1.05 -2.77 0.00 0.52 C | 1.45 -0.49 -0.81 1.68 -2.89 -1.28 0.85 0.64 -2.20 -2.89 0.11 1.67 1.58 -0.94 1.20 0.48 -2.89 G | 0.15 0.37 -0.81 -2.89 -2.89 1.64 -2.89 -2.89 1.37 -2.89 1.27 -2.89 -2.89 -2.89 -2.89 -2.89 0.85 T | -3.47 0.27 0.34 -3.47 -3.47 -3.47 -0.37 0.69 -3.47 -3.47 -3.47 -2.77 -1.07 -3.47 0.15 0.20 -2.37
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 32 genes
YFR033C, YPL016W, YIL015C-A, YBR129C, YFR006W, YGR247W, YPL083C, YCL065W, YGL207W, YLR224W, YOR043W, YJR094C, YMR023C, YJR148W, YLR099C, YBL031W, YKL213C, YMR110C, YKR024C, YNL065W, YPL221W, YNL289W, YHR072W, YKL031W, YBR054W, YLR297W, YKL161C, YEL003W, YLR016C, YNL202W, YOL101C, YJL202C
Predicted TF–TF partners 1 genes
XBP1