S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

MCM1

YMR043W, FUN80

View at SGD ↗

Transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Morozov et. al.
Fisher’s P-value8.53e-89
Information content15.69
Max PWM score16.39
Recommended cutoff10.15
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.078 0.079 0.148 0.017 0.001 0.160 0.807 0.875 0.406 0.299 0.356 0.014 0.019 0.691 0.798 0.882 
C | 0.126 0.010 0.085 0.969 0.981 0.186 0.040 0.020 0.041 0.342 0.068 0.001 0.013 0.088 0.100 0.008 
G | 0.014 0.067 0.092 0.007 0.001 0.169 0.108 0.050 0.025 0.148 0.424 0.981 0.938 0.067 0.023 0.041 
T | 0.783 0.844 0.676 0.007 0.017 0.486 0.045 0.055 0.527 0.212 0.152 0.004 0.030 0.154 0.079 0.069
Position count matrix (PCM)
A |   7   7  14   1   0  16  80  87  40  29  35   1   1  69  79  88 
C |  12   1   8  96  98  18   4   2   4  34   6   0   1   8  10   0 
G |   1   6   9   0   0  16  10   5   2  14  42  98  93   6   2   4 
T |  78  84  67   0   1  48   4   5  52  21  15   0   3  15   7   6
Position weight matrix (PWM)
A | -1.41 -1.40 -0.77 -2.94 -5.77 -0.69  0.93  1.01  0.24 -0.07  0.11 -3.13 -2.82  0.77  0.91  1.01 
C | -0.36 -2.89 -0.75  1.68  1.70  0.03 -1.50 -2.20 -1.48  0.64 -0.97 -5.19 -2.63 -0.72 -0.59 -3.11 
G | -2.55 -0.99 -0.67 -3.25 -5.19 -0.06 -0.51 -1.28 -1.97 -0.20  0.86  1.70  1.65 -0.99 -2.06 -1.48 
T |  0.89  0.97  0.75 -3.82 -2.94  0.42 -1.96 -1.76  0.50 -0.41 -0.74 -4.38 -2.37 -0.73 -1.40 -1.53
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 14

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

MCM1_AFoat et. al.P = 8.92e-48View matrix ↘
Sequence logo for MCM1_A
Fisher’s P-value8.92e-48
Information content15.32
Max PWM score16.53
Recommended cutoff8.28
Position frequency matrix (PFM)
A | 0.11 0.30 0.08 0.01 0.01 0.22 0.65 0.29 0.06 0.34 0.21 0.02 0.01 0.56 0.94 0.74 
C | 0.32 0.01 0.77 0.97 0.90 0.42 0.06 0.10 0.37 0.27 0.26 0.01 0.02 0.35 0.04 0.01 
G | 0.01 0.04 0.01 0.01 0.01 0.20 0.21 0.43 0.14 0.20 0.51 0.96 0.94 0.01 0.01 0.22 
T | 0.56 0.65 0.13 0.01 0.08 0.15 0.08 0.18 0.43 0.19 0.01 0.01 0.03 0.08 0.01 0.03
Position count matrix (PCM)
A |  11  30   8   1   1  22  65  28   6  34  21   2   1  56  94  74 
C |  32   1  77  97  90  42   6  10  37  27  26   1   2  35   4   1 
G |   1   4   1   1   1  20  21  43  14  20  51  96  94   1   1  22 
T |  56  65  13   1   8  15   8  18  43  19   1   1   3   8   1   3
Position weight matrix (PWM)
A | -1.07 -0.06 -1.39 -3.47 -3.47 -0.37  0.71 -0.10 -1.67  0.06 -0.42 -2.77 -3.47  0.56  1.08  0.84 
C |  0.58 -2.89  1.45  1.68  1.61  0.85 -1.10 -0.59  0.72  0.41  0.37 -2.89 -2.20  0.66 -1.50 -2.89 
G | -2.89 -1.50 -2.89 -2.89 -2.89  0.11  0.15  0.87 -0.25  0.11  1.04  1.67  1.65 -2.89 -2.89  0.20 
T |  0.56  0.71 -0.90 -3.47 -1.39 -0.76 -1.39 -0.58  0.30 -0.52 -3.47 -3.47 -2.37 -1.39 -3.47 -2.37
Foat et. al.
MCM1_BFoat et. al.P = 2.30e-23View matrix ↘
Sequence logo for MCM1_B
Fisher’s P-value2.30e-23
Information content18.57
Max PWM score18.97
Recommended cutoff9.52
Position frequency matrix (PFM)
A | 0.21 0.57 0.02 0.01 0.01 0.01 0.14 0.41 0.72 0.12 0.10 0.11 0.07 0.02 0.72 0.57 0.97 0.84 
C | 0.24 0.03 0.09 0.82 0.97 0.97 0.35 0.01 0.01 0.02 0.19 0.09 0.01 0.01 0.10 0.01 0.01 0.01 
G | 0.01 0.01 0.46 0.06 0.01 0.01 0.01 0.52 0.03 0.01 0.11 0.58 0.92 0.95 0.17 0.01 0.01 0.03 
T | 0.54 0.40 0.43 0.12 0.01 0.01 0.51 0.06 0.24 0.85 0.59 0.21 0.01 0.02 0.01 0.42 0.01 0.11
Position count matrix (PCM)
A |  21  56   2   1   1   1  14  41  72  12  10  11   7   2  72  56  97  84 
C |  24   3   9  82  97  97  35   1   1   2  19   9   1   1  10   1   1   1 
G |   1   1  46   6   1   1   1  52   3   1  11  57  92  95  17   1   1   3 
T |  54  40  43  12   1   1  51   6  24  85  59  21   1   2   1  42   1  11
Position weight matrix (PWM)
A | -0.42  0.58 -2.77 -3.47 -3.47 -3.47 -0.83  0.25  0.81 -0.98 -1.16 -1.07 -1.52 -2.77  0.81  0.58  1.11  0.97 
C |  0.29 -1.79 -0.69  1.52  1.68  1.68  0.66 -2.89 -2.89 -2.20  0.05 -0.69 -2.89 -2.89 -0.59 -2.89 -2.89 -2.89 
G | -2.89 -2.89  0.94 -1.10 -2.89 -2.89 -2.89  1.06 -1.79 -2.89 -0.49  1.17  1.63  1.66 -0.06 -2.89 -2.89 -1.79 
T |  0.52  0.22  0.30 -0.98 -3.47 -3.47  0.47 -1.67 -0.29  0.98  0.61 -0.42 -3.47 -2.77 -3.47  0.27 -3.47 -1.07
Foat et. al.
MCM1_CFoat et. al.P = 8.73e-56View matrix ↘
Sequence logo for MCM1_C
Fisher’s P-value8.73e-56
Information content15.14
Max PWM score16.63
Recommended cutoff8.46
Position frequency matrix (PFM)
A | 0.16 0.19 0.06 0.01 0.01 0.36 0.33 0.16 0.01 0.30 0.22 0.01 0.07 0.25 0.92 0.75 
C | 0.21 0.05 0.76 0.97 0.90 0.13 0.16 0.01 0.15 0.50 0.30 0.01 0.03 0.43 0.02 0.04 
G | 0.04 0.05 0.05 0.01 0.01 0.15 0.22 0.61 0.02 0.01 0.45 0.97 0.89 0.01 0.04 0.17 
T | 0.59 0.71 0.13 0.01 0.08 0.35 0.29 0.22 0.83 0.20 0.03 0.01 0.02 0.31 0.02 0.04
Position count matrix (PCM)
A |  16  19   6   1   1  36  33  16   1  30  22   1   7  25  92  75 
C |  21   5  76  97  90  13  16   1  15  50  30   1   3  43   2   4 
G |   4   5   5   1   1  15  22  61   2   1  45  97  89   1   4  17 
T |  59  71  13   1   8  35  28  22  83  20   3   1   2  31   2   4
Position weight matrix (PWM)
A | -0.69 -0.52 -1.67 -3.47 -3.47  0.12  0.03 -0.69 -3.47 -0.06 -0.37 -3.47 -1.52 -0.25  1.06  0.85 
C |  0.15 -1.28  1.44  1.68  1.61 -0.33 -0.12 -2.89 -0.18  1.02  0.51 -2.89 -1.79  0.87 -2.20 -1.50 
G | -1.50 -1.28 -1.28 -2.89 -2.89 -0.18  0.20  1.22 -2.20 -2.89  0.92  1.68  1.60 -2.89 -1.50 -0.06 
T |  0.61  0.80 -0.90 -3.47 -1.39  0.09 -0.10 -0.37  0.95 -0.47 -2.37 -3.47 -2.77 -0.03 -2.77 -2.08
Foat et. al.
MCM1_DFoat et. al.P = 9.34e-63View matrix ↘
Sequence logo for MCM1_D
Fisher’s P-value9.34e-63
Information content14.14
Max PWM score15.11
Recommended cutoff9.68
Position frequency matrix (PFM)
A | 0.21 0.40 0.30 0.02 0.01 0.06 0.39 0.27 0.02 0.13 0.11 0.28 0.01 0.40 0.85 0.80 0.23 
C | 0.05 0.02 0.16 0.96 0.97 0.52 0.02 0.01 0.11 0.25 0.05 0.01 0.01 0.15 0.09 0.14 0.44 
G | 0.01 0.13 0.18 0.01 0.01 0.02 0.21 0.47 0.01 0.01 0.31 0.71 0.97 0.21 0.01 0.04 0.03 
T | 0.74 0.45 0.36 0.01 0.01 0.40 0.38 0.26 0.86 0.61 0.53 0.01 0.01 0.24 0.06 0.01 0.31
Position count matrix (PCM)
A |  21  40  30   2   1   6  39  27   2  13  11  28   1  40  85  80  23 
C |   5   2  16  96  97  52   2   1  11  25   5   1   1  15   9  14  44 
G |   1  13  18   1   1   2  21  47   1   1  31  71  97  21   1   4   3 
T |  74  45  36   1   1  40  38  26  86  61  53   1   1  24   6   1  31
Position weight matrix (PWM)
A | -0.42  0.22 -0.06 -2.77 -3.47 -1.67  0.20 -0.17 -2.77 -0.90 -1.07 -0.13 -3.47  0.22  0.98  0.92 -0.33 
C | -1.28 -2.20 -0.12  1.67  1.68  1.06 -2.20 -2.89 -0.49  0.33 -1.28 -2.89 -2.89 -0.18 -0.69 -0.25  0.89 
G | -2.89 -0.33  0.00 -2.89 -2.89 -2.20  0.15  0.96 -2.89 -2.89  0.54  1.37  1.68  0.15 -2.89 -1.50 -1.79 
T |  0.84  0.34  0.12 -3.47 -3.47  0.22  0.17 -0.21  0.99  0.65  0.50 -3.47 -3.47 -0.29 -1.67 -3.47 -0.03
Foat et. al.
MCM1_AFordyce et. al.P = 1.93e-07View matrix ↘
Fisher’s P-value1.93e-07
Information content6.085
Max PWM score7.16
Recommended cutoff5.85
Position frequency matrix (PFM)
A | 0.83 0.78 0.22 0.15 0.66 0.01 0.01 0.56 
C | 0.08 0.01 0.02 0.13 0.06 0.36 0.02 0.24 
G | 0.01 0.01 0.01 0.12 0.27 0.62 0.68 0.04 
T | 0.08 0.20 0.74 0.60 0.01 0.01 0.30 0.16
Position count matrix (PCM)
A |  83  78  22  15  66   1   1  56 
C |   8   1   2  13   6  36   2  24 
G |   1   1   1  12  27  62  68   4 
T |   8  20  74  60   1   1  30  16
Position weight matrix (PWM)
A |  0.95  0.89 -0.37 -0.76  0.72 -3.47 -3.47  0.56 
C | -0.81 -2.89 -2.20 -0.33 -1.10  0.69 -2.20  0.29 
G | -2.89 -2.89 -2.89 -0.41  0.41  1.24  1.33 -1.50 
T | -1.39 -0.47  0.84  0.63 -3.47 -3.47 -0.06 -0.69
Fordyce et. al.
MCM1_BFordyce et. al.P = 7.11e-06View matrix ↘
Fisher’s P-value7.11e-06
Information content6.157
Max PWM score7.16
Recommended cutoff4.11
Position frequency matrix (PFM)
A | 0.56 0.82 0.80 0.22 0.14 0.65 0.01 0.01 
C | 0.23 0.08 0.01 0.02 0.13 0.08 0.37 0.01 
G | 0.02 0.01 0.01 0.01 0.12 0.27 0.62 0.67 
T | 0.19 0.09 0.18 0.75 0.60 0.01 0.01 0.32
Position count matrix (PCM)
A |  56  82  80  22  14  65   1   1 
C |  23   8   1   2  13   8  37   1 
G |   2   1   1   1  12  27  62  67 
T |  19   9  18  75  60   1   1  32
Position weight matrix (PWM)
A |  0.56  0.94  0.92 -0.37 -0.83  0.71 -3.47 -3.47 
C |  0.25 -0.81 -2.89 -2.20 -0.33 -0.81  0.72 -2.89 
G | -2.20 -2.89 -2.89 -2.89 -0.41  0.41  1.24  1.31 
T | -0.52 -1.27 -0.58  0.85  0.63 -3.47 -3.47  0.00
Fordyce et. al.
MCM1_CFordyce et. al.P = 4.79e-13View matrix ↘
Fisher’s P-value4.79e-13
Information content5.4
Max PWM score6.43
Recommended cutoff4.88
Position frequency matrix (PFM)
A | 0.61 0.26 0.15 0.56 0.01 0.01 0.55 0.87 
C | 0.01 0.03 0.08 0.22 0.58 0.04 0.17 0.10 
G | 0.01 0.01 0.20 0.19 0.41 0.57 0.17 0.01 
T | 0.38 0.70 0.57 0.03 0.01 0.38 0.11 0.02
Position count matrix (PCM)
A |  61  26  15  56   1   1  55  87 
C |   1   3   8  22  57   4  17  10 
G |   1   1  20  19  41  56  17   1 
T |  38  70  56   3   1  38  11   2
Position weight matrix (PWM)
A |  0.65 -0.21 -0.76  0.56 -3.47 -3.47  0.54  1.00 
C | -2.89 -1.79 -0.81  0.20  1.17 -1.50 -0.06 -0.59 
G | -2.89 -2.89  0.11  0.05  0.82  1.15 -0.06 -2.89 
T |  0.17  0.78  0.58 -2.37 -3.47  0.17 -1.07 -2.77
Fordyce et. al.
MCM1Harbison et. al.P = 9.20e-59View matrix ↘
Sequence logo for MCM1
Fisher’s P-value9.20e-59
Information content8.618
Max PWM score11.67
Recommended cutoff8.65
Position frequency matrix (PFM)
A | 0.205 0.163 0.185 0.043 0.011 0.196 0.634 0.855 0.320 0.229 0.369 0.112 0.106 
C | 0.116 0.094 0.089 0.857 0.915 0.297 0.037 0.004 0.030 0.264 0.112 0.053 0.064 
G | 0.111 0.105 0.098 0.042 0.045 0.080 0.239 0.025 0.017 0.092 0.306 0.740 0.715 
T | 0.569 0.639 0.628 0.057 0.027 0.426 0.090 0.117 0.634 0.415 0.212 0.094 0.113
Position count matrix (PCM)
A |  20  16  18   4   1  19  63  85  32  22  36  11  10 
C |  11   9   8  85  91  29   3   0   3  26  11   5   6 
G |  11  10   9   4   4   8  23   2   1   9  30  74  71 
T |  56  63  62   5   2  42   9  11  63  41  21   9  11
Position weight matrix (PWM)
A | -0.45 -0.67 -0.55 -2.01 -3.37 -0.49  0.68  0.98  0.00 -0.33  0.14 -1.05 -1.10 
C | -0.44 -0.65 -0.70  1.56  1.63  0.50 -1.58 -3.81 -1.79  0.38 -0.47 -1.22 -1.03 
G | -0.48 -0.54 -0.61 -1.46 -1.39 -0.81  0.28 -1.97 -2.36 -0.67  0.53  1.41  1.38 
T |  0.58  0.69  0.67 -1.73 -2.47  0.29 -1.27 -1.01  0.68  0.26 -0.41 -1.23 -1.04
Harbison et. al.
MCM1Macisaac et. alP = 3.29e-76View matrix ↘
Sequence logo for MCM1
Fisher’s P-value3.29e-76
Information content15.37
Max PWM score15.77
Recommended cutoff10.72
Position frequency matrix (PFM)
A | 0.232 0.165 0.179 0.064 0.006 0.160 0.387 0.607 0.063 0.075 0.455 0.048 0.032 0.827 0.941 0.930 
C | 0.120 0.013 0.063 0.915 0.944 0.344 0.128 0.001 0.027 0.182 0.059 0.008 0.005 0.041 0.029 0.016 
G | 0.104 0.210 0.096 0.013 0.001 0.122 0.271 0.001 0.005 0.024 0.323 0.943 0.962 0.055 0.024 0.038 
T | 0.544 0.612 0.662 0.008 0.049 0.373 0.213 0.391 0.905 0.719 0.164 0.001 0.001 0.077 0.006 0.016
Position count matrix (PCM)
A |  23  16  17   6   0  16  38  60   6   7  45   4   3  82  94  93 
C |  12   1   6  91  94  34  12   0   2  18   5   0   0   4   2   1 
G |  10  21   9   1   0  12  27   0   0   2  32  94  96   5   2   3 
T |  54  61  66   0   4  37  21  39  90  71  16   0   0   7   0   1
Position weight matrix (PWM)
A | -0.32 -0.66 -0.58 -1.61 -3.98 -0.69  0.19  0.64 -1.63 -1.45  0.35 -1.90 -2.30  0.95  1.08  1.07 
C | -0.41 -2.63 -1.05  1.63  1.66  0.65 -0.34 -5.19 -1.90  0.01 -1.12 -3.11 -3.58 -1.48 -1.83 -2.42 
G | -0.55  0.15 -0.63 -2.63 -5.19 -0.39  0.41 -5.19 -3.58 -2.01  0.58  1.66  1.68 -1.19 -2.01 -1.56 
T |  0.53  0.65  0.73 -3.69 -1.88  0.15 -0.41  0.20  1.04  0.81 -0.67 -5.77 -5.77 -1.42 -3.98 -3.00
Macisaac et. al
MCM1_APachkov et alP = 1.20e-54View matrix ↘
Sequence logo for MCM1_A
Fisher’s P-value1.20e-54
Information content12.16
Max PWM score12.32
Recommended cutoff7.73
Position frequency matrix (PFM)
A | 0.122 0.007 0.185 0.393 0.557 0.068 0.080 0.422 0.045 0.009 0.752 0.911 
C | 0.822 0.923 0.363 0.144 0.014 0.017 0.263 0.075 0.002 0.010 0.069 0.029 
G | 0.029 0.001 0.186 0.223 0.046 0.001 0.037 0.379 0.953 0.980 0.023 0.026 
T | 0.027 0.070 0.265 0.239 0.383 0.915 0.620 0.125 0.001 0.001 0.156 0.035
Position count matrix (PCM)
A |  12   0  18  39  55   6   8  42   4   0  75  91 
C |  82  92  36  14   1   1  26   7   0   1   6   2 
G |   2   0  18  22   4   0   3  37  95  98   2   2 
T |   2   7  26  23  38  91  62  12   0   0  15   3
Position weight matrix (PWM)
A | -0.96 -3.82 -0.55  0.21  0.55 -1.55 -1.39  0.28 -1.96 -3.57  0.85  1.05 
C |  1.52  1.63  0.70 -0.22 -2.55 -2.36  0.38 -0.88 -4.50 -2.89 -0.96 -1.83 
G | -1.83 -5.19  0.03  0.21 -1.36 -5.19 -1.58  0.74  1.67  1.69 -2.06 -1.93 
T | -2.47 -1.52 -0.19 -0.29  0.18  1.05  0.66 -0.94 -5.77 -5.77 -0.72 -2.21
Pachkov et al
MCM1_BPachkov et alP = 2.02e-73View matrix ↘
Sequence logo for MCM1_B
Fisher’s P-value2.02e-73
Information content16.27
Max PWM score16.2
Recommended cutoff9.42
Position frequency matrix (PFM)
A | 0.001 0.139 0.333 0.028 0.001 0.139 0.528 0.667 0.361 0.250 0.889 0.028 0.001 0.778 0.889 0.889 
C | 0.083 0.028 0.056 0.972 0.944 0.472 0.056 0.028 0.001 0.056 0.001 0.001 0.001 0.028 0.056 0.001 
G | 0.111 0.111 0.167 0.001 0.001 0.222 0.167 0.056 0.028 0.111 0.028 0.972 1.000 0.083 0.001 0.056 
T | 0.806 0.722 0.444 0.001 0.056 0.167 0.250 0.250 0.611 0.583 0.083 0.001 0.001 0.111 0.056 0.056
Position count matrix (PCM)
A |   0  13  33   2   0  13  52  66  36  25  88   2   0  77  88  88 
C |   8   2   5  97  94  47   5   2   0   5   0   0   0   2   5   0 
G |  11  11  16   0   0  22  16   5   2  11   2  97 100   8   0   5 
T |  80  72  44   0   5  16  25  25  61  58   8   0   0  11   5   5
Position weight matrix (PWM)
A | -5.77 -0.83  0.04 -2.44 -5.77 -0.83  0.50  0.73  0.12 -0.25  1.02 -2.44 -5.77  0.89  1.02  1.02 
C | -0.77 -1.86 -1.17  1.69  1.66  0.96 -1.17 -1.86 -5.19 -1.17 -5.19 -5.19 -5.19 -1.86 -1.17 -5.19 
G | -0.48 -0.48 -0.07 -5.19 -5.19  0.21 -0.07 -1.17 -1.86 -0.48 -1.86  1.69  1.71 -0.77 -5.19 -1.17 
T |  0.92  0.81  0.33 -5.77 -1.74 -0.65 -0.25 -0.25  0.65  0.60 -1.35 -5.77 -5.77 -1.06 -1.74 -1.74
Pachkov et al
MCM1Zhu J and MQ ZhangP = 3.39e-43View matrix ↘
Sequence logo for MCM1
Fisher’s P-value3.39e-43
Information content8.025
Max PWM score10.09
Recommended cutoff6.6
Position frequency matrix (PFM)
A | 0.14 0.05 0.14 0.38 0.67 0.29 0.29 0.81 0.05 0.05 
C | 0.76 0.86 0.48 0.14 0.10 0.05 0.14 0.05 0.05 0.05 
G | 0.05 0.05 0.19 0.19 0.10 0.05 0.05 0.10 0.86 0.86 
T | 0.05 0.05 0.19 0.29 0.14 0.62 0.52 0.05 0.05 0.05
Position count matrix (PCM)
A |  14   5  14  38  67  28  28  81   5   5 
C |  76  86  48  14  10   5  14   5   5   5 
G |   5   5  19  19  10   5   5  10  86  86 
T |   5   5  19  28  14  62  52   5   5   5
Position weight matrix (PWM)
A | -0.83 -1.86 -0.83  0.17  0.74 -0.10 -0.10  0.93 -1.86 -1.86 
C |  1.44  1.56  0.98 -0.25 -0.59 -1.28 -0.25 -1.28 -1.28 -1.28 
G | -1.28 -1.28  0.05  0.05 -0.59 -1.28 -1.28 -0.59  1.56  1.56 
T | -1.86 -1.86 -0.52 -0.10 -0.83  0.66  0.49 -1.86 -1.86 -1.86
Zhu J and MQ Zhang
MCM1Zhu et. al.P = 2.00e-62View matrix ↘
Sequence logo for MCM1
Fisher’s P-value2.00e-62
Information content9.937
Max PWM score13.7
Recommended cutoff8.3
Position frequency matrix (PFM)
A | 0.09 0.17 0.13 0.01 0.12 0.60 0.66 0.29 0.15 0.17 0.17 0.05 0.72 0.48 0.55 
C | 0.08 0.03 0.81 0.81 0.41 0.08 0.01 0.04 0.17 0.44 0.01 0.01 0.09 0.29 0.07 
G | 0.16 0.13 0.01 0.01 0.24 0.17 0.04 0.01 0.08 0.27 0.81 0.81 0.10 0.08 0.22 
T | 0.66 0.67 0.05 0.17 0.23 0.15 0.29 0.66 0.60 0.12 0.01 0.13 0.08 0.15 0.17
Position count matrix (PCM)
A |   9  17  13   1  12  60  66  28  15  17  17   5  72  48  55 
C |   8   3  81  81  41   8   1   4  17  44   1   1   9  28   7 
G |  16  13   1   1  24  17   4   1   8  27  81  81  10   8  22 
T |  66  67   5  17  23  15  28  66  60  12   1  13   8  15  17
Position weight matrix (PWM)
A | -1.27 -0.63 -0.90 -3.47 -0.98  0.63  0.72 -0.10 -0.76 -0.63 -0.63 -1.86  0.81  0.41  0.54 
C | -0.81 -1.79  1.50  1.50  0.82 -0.81 -2.89 -1.50 -0.06  0.89 -2.89 -2.89 -0.69  0.48 -0.94 
G | -0.12 -0.33 -2.89 -2.89  0.29 -0.06 -1.50 -2.89 -0.81  0.41  1.50  1.50 -0.59 -0.81  0.20 
T |  0.72  0.74 -1.86 -0.63 -0.33 -0.76 -0.10  0.72  0.63 -0.98 -3.47 -0.90 -1.39 -0.76 -0.63
Zhu et. al.
MCM1Zhao and StormoP = 1View matrix ↘
Sequence logo for MCM1
Fisher’s P-value1
Information content1.388
Max PWM score4.23
Recommended cutoff3.88
Position frequency matrix (PFM)
A | 0.156 0.333 0.434 0.382 0.296 0.287 0.256 0.200 
C | 0.360 0.160 0.160 0.120 0.204 0.270 0.172 0.040 
G | 0.281 0.281 0.184 0.162 0.183 0.217 0.422 0.608 
T | 0.204 0.225 0.222 0.336 0.317 0.226 0.151 0.151
Position count matrix (PCM)
A |  15  33  43  38  29  28  25  20 
C |  36  16  16  12  20  27  17   4 
G |  28  28  18  16  18  21  42  60 
T |  20  22  22  33  31  22  15  15
Position weight matrix (PWM)
A | -0.72  0.04  0.30  0.18 -0.08 -0.11 -0.22 -0.47 
C |  0.69 -0.12 -0.12 -0.41  0.13  0.41 -0.05 -1.50 
G |  0.45  0.45  0.02 -0.11  0.02  0.19  0.85  1.22 
T | -0.45 -0.35 -0.37  0.05 -0.01 -0.35 -0.75 -0.75
Zhao and Stormo
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 163 genes

YAL037W, YAL038W, YAL040C, YAR018C, YBL026W, YBL059W, YBL104C, YBR037C, YBR038W, YBR044C, YBR060C, YBR122C, YBR124W, YCR018C-A, YCR019W, YCR024C, YDL044C, YDL134C, YDR042C, YDR146C, YDR147W, YDR148C, YDR150W, YDR179C, YDR179W-A, YDR210W-D, YDR224C, YDR225W, YDR278C, YDR316W-A, YDR316W-B, YDR389W, YDR420W, YDR434W, YDR451C, YDR452W, YDR461W, YDR528W, YEL012W, YEL040W, YEL044W, YEL045C, YEL046C, YER007C-A, YER044C, YER069W, YER071C, YER072W, YER111C, YER112W, YER136W, YER138C, YER159C-A, YER160C, YFL026W, YFL027C, YFL034W, YGL032C, YGL116W, YGL201C, YGL202W, YGR041W, YGR047C, YGR048W, YGR089W, YGR092W, YGR123C, YGR168C, YGR190C, YGR191W, YHR005C, YHR098C, YHR099W, YHR151C, YHR152W, YIL015W, YIL069C, YIL076W, YIL077C, YIL123W, YIL158W, YJL003W, YJL004C, YJL049W, YJL051W, YJL148W, YJL155C, YJL158C, YJL159W, YJL160C, YJL194W, YJL196C, YJR091C, YJR092W, YKL039W, YKL040C, YKL058W, YKL059C, YKL072W, YKL163W, YKL164C, YKR036C, YKR040C, YKR042W, YKR068C, YKR069W, YLR036C, YLR084C, YLR105C, YLR131C, YLR166C, YLR167W, YLR189C, YLR190W, YLR261C, YLR262C, YLR273C, YLR274W, YLR302C, YML052W, YML053C, YML109W, YML110C, YMR144W, YMR231W, YMR253C, YNL053W, YNL056W, YNL058C, YNL145W, YNL289W, YNL298W, YNL331C, YNR028W, YNR044W, YNR054C, YNR062C, YNR063W, YOL011W, YOL012C, YOL066C, YOL115W, YOL117W, YOL118C, YOL151W, YOR066W, YOR108W, YOR236W, YOR315W, YOR354C, YOR360C, YOR388C, YOR389W, YPL044C, YPL275W, YPL276W, YPL277C, YPL278C, YPR007C, YPR109W, YPR112C, YPR113W, YPR119W

Genes affected by TF deletion 854 genes

YBL113C, YBL086C, YBR004C, YBR034C, YBR006W, YBR036C, YCR012W, YCL055W, YCR016W, YDR366C, YDR434W, YER116C, YER145C, YER118C, YER178W, YGL232W, YGL234W, YHL010C, YHL044W, YGR280C, YGR282C, YIL110W, YIL142W, YIL116W, YKR075C, YLR214W, YML112W, YMR043W, YMR014W, YMR045C, YML117W-A, YMR046W-A, YNL018C, YNL050C, YNL085W, YOL012C, YOL043C, YOL013W-A, YOR225W, YPL174C, YPL239W, YPL209C, YPL243W, YKL122C, YMR109W, YAL037W, YBR219C, YBR162C, YDL062W, YDL096C, YDL128W, YDR222W, YEL042W, YGR156W, YHR117W, YHR148W, YJL119C, YKL043W, YKL045W, YKL049C, YLR025W, YLR056W, YLR027C, YLR029C, YLR432W, YLR436C, YMR194W, YMR226C, YNL239W, YNL241C, YNL243W, YOR065W, YOR006C, YOR039W, YPL049C, YPL019C, YPL051W, YPL053C, YPR139C, YCR057C, YDR301W, YPL064C, YBL083C, YBR029C, YBR005W, YCR009C, YCR037C, YCR039C, YCR013C, YDR034C-A, YDR365W-B, YDR429C, YDR399W, YER144C, YGL168W, YGL231C, YGR275W, YHL045W, YHL047C, YIL077C, YIL109C, YJR047C, YJR086W, YMR009W, YML115C, YNL051W, YNL084C, YOL011W, YOL014W, YOL048C, YOR220W, YOR252W, YOR222W, YOR226C, YPL204W, YPL206C, YAL035C-A, YBR220C, YDL125C, YDL063C, YDL095W, YDL129W, YDL067C, YDR187C, YEL011W, YEL015W, YEL076C, YEL017C-A, YFR033C, YGL012W, YGL044C, YGR122C-A, YGR155W, YGR157W, YHR175W, YHR145C, YHR179W, YJL080C, YJL082W, YJL086C, YKL104C, YKL044W, YKL079W, YNL274C, YOR036W, YOR068C, YPL014W, YPL048W, YPL050C, YOR382W, YPR138C, YBR126C, YDR342C, YBR092C, YCR082W, YDR096W, YDR128W, YFL045C, YGR005C, YHR081W, YHR083W, YHR025W, YJL016W, YJL020C, YIR034C, YJR143C, YJR147W, YJR118C, YJR149W, YLR340W, YLR374C, YMR132C, YMR103C, YMR105C, YOL136C, YOL106W, YOR315W, YOR287C, YOR317W, YOR289W, YOR351C, YPR016C, YPR020W, YPR052C, YPL283C, YBR251W, YBR283C, YDR276C, YER053C, YGL103W, YGL137W, YGR184C, YGR248W, YGR250C, YIL016W, YJL151C, YJL183W, YLR126C, YML056C, YML085C, YMR314W, YMR316W, YNR030W, YOR135C, YPL146C, YHR183W, YBR093C, YBR067C, YBR097W, YCR075C, YDR127W, YDR525W, YDR497C, YFR004W, YFL013C, YGR028W, YGR030C, YHR050W, YHR084W, YJL017W, YJL021C, YJR111C, YJR113C, YKL013C, YJR146W, YKL017C, YLL027W, YLL031C, YLR304C, YLR306W, YLR339C, YMR072W, YMR074C, YMR104C, YMR136W, YNL110C, YOL137W, YOL109W, YOR284W, YOR344C, YOR286W, YOR320C, YPL265W, YPR045C, YCL012W, YBR254C, YBR256C, YDR277C, YDR340W, YER023W, YER025W, YER057C, YGL136C, YGR211W, YGR183C, YGR217W, YIL015W, YIL051C, YJL208C, YJL212C, YKL199C, YKL142W, YLR153C, YLR155C, YLR157C, YML053C, YML055W, YML086C, YML028W, YMR251W-A, YNL300W, YNR025C, YNL336W, YPL111W, YER042W, YBR012W-B, YCR046C, YCR021C, YDR074W, YDR442W, YDR412W, YGL209W, YGR284C, YIL088C, YIL122W, YJR030C, YKR049C, YKR020W, YKR053C, YLR257W, YML123C, YNL024C, YOL019W, YOL052C-A, YOL054W, YOR261C, YOR265W, YOR203W, YOR267C, YPL213W, YPL247C, YKL098W, YAR008W, YAL044C, YAR015W, YBR167C, YBR169C, YDL102W, YDR226W, YER002W, YGR130C, YJL063C, YKL051W, YKL084W, YLR066W, YLR068W, YLR438C-A, YML004C, YML006C, YML008C, YMR202W, YOR043W, YOR047C, YOR385W, YBR041W, YCL058C, YCR018C-A, YCR049C, YCL064C, YCR020W-B, YDR011W, YER119C, YER150W, YER152C, YGR283C, YGR285C, YHL021C, YIL123W, YKR052C, YLR221C, YLR225C, YML120C, YML124C, YNR066C, YOL053W, YOR202W, YJR148W, YML100W, YAL040C, YAL012W, YAL042W, YAR007C, YAL043C-A, YBR166C, YDL075W, YER003C, YEL055C, YGL046W, YFR043C, YGR127W, YGR129W, YGR104C, YGR133W, YJL056C, YJL060W, YKL081W, YKL052C, YKL053W, YKL085W, YLR034C, YLR438W, YML005W, YMR195W, YOR076C, YOR078W, YOR388C, YPL028W, YDR343C, YBR070C, YBR106W, YCR084C, YDL041W, YDR171W, YDR502C, YDR533C, YFL018C, YFR015C, YFL022C, YFR017C, YGR038C-B, YGR041W, YHR093W, YHR065C, YIR005W, YIR038C, YKL024C, YLR378C, YLR380W, YMR145C, YOL086C, YOL118C, YOR355W, YPL276W, YPR010C, YBL064C, YBR297W, YDR288W, YDR290W, YGL117W, YHR215W, YIL060W, YKL182W, YLR158C, YLR160C, YLR194C, YLR134W, YML031W, YML062C, YML093W, YMR260C, YMR318C, YMR296C, YNR035C, YPL088W, YPL092W, YPL156C, YFL014W, YJL062W, YBR071W, YBR105C, YCR088W, YDR167W, YDR473C, YGR008C, YHR088W, YHR060W, YIR004W, YIR035C, YJL027C, YJR150C, YLL039C, YLL041C, YLR343W, YLR375W, YLR379W, YLR349W, YMR077C, YMR140W, YMR083W, YNL150W, YOR298C-A, YPL275W, YPR055W, YAR071W, YAR075W, YBL032W, YBR290W, YBR296C, YDR346C, YER031C, YER035W, YER062C, YER037W, YGR251W, YGR189C, YGR221C, YGR253C, YGR257C, YIL053W, YIL057C, YHR216W, YJL188C, YJL158C, YKL210W, YKL150W, YKL214C, YLR193C, YML090W, YML094W, YMR263W, YNL308C, YNR001C, YNR003C, YNR038W, YPL087W, YPL119C, YER060W, YCL067C, YCR059C, YER127W, YER159C, YER133W, YIL162W, YJR032W, YJR064W, YJR096W, YJR070C, YKR024C, YKR059W, YKR093W, YLR259C, YLR295C, YML127W, YNL067W, YOL058W, YOR273C, YPL252C, YPL193W, YIL114C, YKL109W, YAL023C, YAR028W, YAR030C, YBR205W, YBR175W, YBR207W, YDL084W, YDR238C, YEL026W, YGR138C, YGR109W-B, YHR196W, YJL065C, YKL062W, YKL096W, YKL127W, YLR074C, YLR044C, YMR208W, YOR085W, YPL035C, YBR088C, YDR019C, YDR047W, YER126C, YER130C, YHL025W, YHR007C, YGR295C, YIL127C, YIL097W, YKR058W, YLR258W, YLR231C, YLR292C, YLR294C, YML126C, YML128C, YMR058W, YML132W, YMR031C, YNL066W, YOL057W, YOL059W, YOL032W, YOR238W, YPL188W, YPL192C, YJR127C, YAR027W, YAR029W, YBR202W, YBR238C, YDL141W, YDL145C, YGL022W, YGL054C, YFR051C, YGR108W, YGR137W, YGR139W, YHR193C, YKL091C, YNL260C, YPL061W, YPL004C, YBL007C, YBR078W, YCR091W, YDL048C, YCR097W, YDR146C, YDR510W, YFL028C, YFL059W, YFR024C-A, YHR071W, YJL002C, YJL034W, YKL030W, YKL001C, YLL018C-A, YLR326W, YMR120C, YNL197C, YOR335C, YPR004C, YPR136C, YOR383C, YBL070C, YCL038C, YDR292C, YDR322C-A, YDR294C, YER043C, YER070W, YGR196C, YGR198W, YIL066C, YIL036W, YJL193W, YKL186C, YLR136C, YML074C, YMR298W, YMR300C, YMR272C, YBR145W, YDL014W, YCR096C, YDR111C, YDR174W, YDR481C, YDR513W, YFR018C, YFL027C, YFR022W, YFR024C, YGR014W, YGR078C, YGR048W, YGR080W, YIR043C, YIR016W, YJR129C, YKL029C, YJR133W, YLL047W, YLR355C, YLR387C, YLR325C, YMR116C, YMR090W, YMR121C, YNL158W, YNL190W, YNL160W, YNL162W, YOL119C, YOL151W, YOL093W, YOL155C, YPL281C, YPR061C, YPR002C-A, YBL069W, YBL042C, YBR298C, YCL031C, YBR302C, YDL239C, YDR321W, YDR354W, YDR297W, YDR358W, YER066C-A, YER067W, YER098W, YGL154C, YJL164C, YKL183W, YKL156W, YLR201C, YLR203C, YML100W-A, YMR303C, YNR009W, YPL129W, YER091C, YGL192W, YBR054W, YCR034W, YCR069W, YDR056C, YER138C, YHL008C, YHL009W-A, YIL134W, YIL138C, YJR108W, YJR046W, YLR297W, YLR270W, YMR006C, YMR037C, YNL073W, YNL075W, YOL041C, YOL072W, YOR215C, YOR247W, YOR281C, YOR251C, YPL229W, YPL199C, YPL231W, YPL260W, YNL054W, YAL060W, YAL062W, YBR183W, YDR210W-D, YDR270W, YDR212W, YDR244W, YEL034W, YEL065W, YGL031C, YGL037C, YGR146C, YGR176W, YGR119C, YHR141C, YJL141C, YKL131W, YKL135C, YOR089C, YBR055C, YBL107W-A, YBR057C, YCR066W, YCR005C, YCR035C, YDR055W, YDR087C, YDR029W, YDR425W, YDR427W, YER134C, YGL190C, YGL222C, YGL253W, YGL226C-A, YHR015W, YHR019C, YIL165C, YIL105C, YIL107C, YIL171W, YJR103W, YJR105W, YJR043C, YJR045C, YKR100C, YMR062C, YMR005W, YMR007W, YNL104C, YNL043C, YNL076W, YOL003C, YOL065C, YOL038W, YOL009C, YOL071W, YOR212W, YOR250C, YOR282W, YPL196W, YPL228W, YPL230W, YPL259C, YPL202C, YPL263C, YKL009W, YAL058C-A, YAL061W, YBR214W, YDL147W, YDR273W, YGR143W, YGR145W, YGR177C, YHR135C, YHR137W, YJL074C, YJL076W, YJL142C, YKL069W, YKL100C, YKL132C, YLR117C, YML016C, YML018C, YMR181C, YMR243C, YMR215W, YMR217W, YMR250W, YNL264C, YNL234W, YNL266W, YNL268W, YOR056C, YOR058C, YOR092W, YOR094W, YPL012W, YPR103W, YDR152W, YFL037W, YFR001W, YGR087C, YHR046C, YJL012C, YLL024C, YLL026W, YLR334C, YMR158C-B, YNL171C, YOR343C-B, YPR008W, YPR074C, YCL040W, YCL042W, YIL040W, YKL198C, YLR180W, YML076C, YNL327W, YBR084W, YDL059C, YDR121W, YHR047C, YKL040C, YLL019C, YLL021W, YLR022C, YLR327C, YNL166C, YOL101C, YOR306C, YOR342C, YDR299W, YER050C, YER079W, YGR237C, YJL200C, YLR177W, YLR149C, YML109W, YNL007C, YNR017W, YPL107W

Genes supported by both experiments 25 genes

YAL037W, YAL040C, YCR018C-A, YDR146C, YDR210W-D, YDR434W, YER138C, YFL027C, YGR041W, YGR048W, YIL015W, YIL077C, YIL123W, YJL158C, YKL040C, YML053C, YML109W, YOL011W, YOL012C, YOL118C, YOL151W, YOR315W, YOR388C, YPL275W, YPL276W

Predicted TF–TF partners 6 genes

ASH1, FKH1, FKH2, HMRA2, NDD1, SWI6

Explore 6 original interaction plots →