S.ScerTFYeast transcription factor database Aaron Spivak
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MATA2

MATA2, A2

View at SGD ↗

Protein of unknown function, identical to the C-terminal 119 amino acid residues of the MATalpha2 protein; a2 sequence is not present in SGD because the sequenced S288C strain is MATalpha, not MATa

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Fordyce et. al.
Fisher’s P-valueNo data
Information content5.821
Max PWM score6.89
Recommended cutoff5.17
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.43 0.27 0.09 0.49 0.04 0.03 0.01 0.55 
C | 0.14 0.06 0.54 0.06 0.12 0.01 0.06 0.17 
G | 0.30 0.23 0.04 0.41 0.06 0.95 0.01 0.01 
T | 0.13 0.44 0.34 0.04 0.78 0.01 0.92 0.27
Position count matrix (PCM)
A |  43  27   9  49   4   3   1  55 
C |  14   6  54   6  12   1   6  17 
G |  30  23   4  41   6  95   1   1 
T |  13  44  34   4  78   1  92  27
Position weight matrix (PWM)
A |  0.30 -0.17 -1.27  0.43 -2.08 -2.37 -3.47  0.54 
C | -0.25 -1.10  1.10 -1.10 -0.41 -2.89 -1.10 -0.06 
G |  0.51  0.25 -1.50  0.82 -1.10  1.66 -2.89 -2.89 
T | -0.90  0.32  0.06 -2.08  0.89 -3.47  1.06 -0.17
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 2

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

MATA2_AFordyce et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content5.66
Max PWM score5.96
Recommended cutoff4.47
Position frequency matrix (PFM)
A | 0.84 0.01 0.82 0.01 0.20 0.35 
C | 0.01 0.86 0.01 0.39 0.01 0.25 
G | 0.01 0.01 0.14 0.01 0.72 0.04 
T | 0.14 0.12 0.03 0.60 0.06 0.36
Position count matrix (PCM)
A |  84   1  82   1  20  35 
C |   1  86   1  39   1  25 
G |   1   1  14   1  72   4 
T |  14  12   3  60   6  36
Position weight matrix (PWM)
A |  0.97 -3.47  0.94 -3.47 -0.47  0.09 
C | -2.89  1.56 -2.89  0.77 -2.89  0.33 
G | -2.89 -2.89 -0.25 -2.89  1.39 -1.50 
T | -0.83 -0.98 -2.37  0.63 -1.67  0.12
Fordyce et. al.
MATA2_BFordyce et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content5.637
Max PWM score6.63
Recommended cutoff4.97
Position frequency matrix (PFM)
A | 0.25 0.12 0.49 0.05 0.01 0.01 0.52 0.46 
C | 0.06 0.50 0.07 0.13 0.01 0.04 0.20 0.18 
G | 0.26 0.05 0.39 0.05 0.97 0.01 0.03 0.18 
T | 0.43 0.33 0.04 0.76 0.01 0.94 0.26 0.18
Position count matrix (PCM)
A |  25  12  49   5   1   1  52  46 
C |   6  50   7  13   1   4  20  18 
G |  26   5  39   5  97   1   3  18 
T |  43  33   4  76   1  94  26  18
Position weight matrix (PWM)
A | -0.25 -0.98  0.43 -1.86 -3.47 -3.47  0.49  0.36 
C | -1.10  1.02 -0.94 -0.33 -2.89 -1.50  0.11  0.00 
G |  0.37 -1.28  0.77 -1.28  1.68 -2.89 -1.79  0.00 
T |  0.30  0.03 -2.08  0.86 -3.47  1.08 -0.21 -0.58
Fordyce et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 1 genes

No Data

Genes supported by both experiments 1 genes

No Data