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LYS14
YDR034C
Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content12.99
Max PWM score11.08
Recommended cutoff8.3
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.78 0.94 0.92 0.01 0.01 0.01 0.01 0.01 0.02 C | 0.01 0.01 0.01 0.01 0.05 0.97 0.97 0.01 0.18 G | 0.05 0.01 0.01 0.01 0.01 0.01 0.01 0.97 0.41 T | 0.15 0.04 0.06 0.97 0.93 0.01 0.01 0.01 0.39
Position count matrix (PCM)
A | 78 94 92 1 1 1 1 1 2 C | 1 1 1 1 5 97 97 1 18 G | 5 1 1 1 1 1 1 97 41 T | 15 4 6 97 93 1 1 1 39
Position weight matrix (PWM)
A | 0.89 1.08 1.06 -3.47 -3.47 -3.47 -3.47 -3.47 -2.77 C | -2.89 -2.89 -2.89 -2.89 -1.28 1.68 1.68 -2.89 0.00 G | -1.28 -2.89 -2.89 -2.89 -2.89 -2.89 -2.89 1.68 0.82 T | -0.76 -2.08 -1.67 1.11 1.07 -3.47 -3.47 -3.47 0.20
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
LYS14Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content10.3
Max PWM score8.9
Recommended cutoff6.67
Position frequency matrix (PFM)
A | 0.04 0.01 0.01 0.97 0.97 0.06 0.13 C | 0.82 0.01 0.01 0.01 0.01 0.01 0.13 G | 0.10 0.97 0.97 0.01 0.01 0.01 0.07 T | 0.04 0.01 0.01 0.01 0.01 0.92 0.67
Position count matrix (PCM)
A | 4 1 1 97 97 6 13 C | 82 1 1 1 1 1 13 G | 10 97 97 1 1 1 7 T | 4 1 1 1 1 92 67
Position weight matrix (PWM)
A | -2.08 -3.47 -3.47 1.11 1.11 -1.67 -0.90 C | 1.52 -2.89 -2.89 -2.89 -2.89 -2.89 -0.33 G | -0.59 1.68 1.68 -2.89 -2.89 -2.89 -0.94 T | -2.08 -3.47 -3.47 -3.47 -3.47 1.06 0.74
LYS14Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content3.566
Max PWM score5.29
Recommended cutoff3.97
Position frequency matrix (PFM)
A | 0.177 0.119 0.102 0.621 0.771 C | 0.516 0.018 0.146 0.036 0.001 G | 0.156 0.762 0.633 0.245 0.056 T | 0.151 0.101 0.119 0.099 0.172
Position count matrix (PCM)
A | 17 11 10 62 77 C | 51 1 14 3 0 G | 15 76 63 24 5 T | 15 10 11 9 17
Position weight matrix (PWM)
A | -0.59 -0.99 -1.14 0.66 0.88 C | 1.05 -2.30 -0.21 -1.61 -5.19 G | -0.14 1.44 1.26 0.31 -1.17 T | -0.75 -1.15 -0.99 -1.17 -0.62
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 3 genes
NHP10, STB5, STE12