← All factors / TF RECORD
JHD1
YER051W, KDM2, JHDM1
JmjC domain family histone demethylase specific for H3-K36, similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.001618
Information content9.568
Max PWM score7.6
Recommended cutoff7.6
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.012 0.004 0.153 0.005 0.994 0.986 C | 0.001 0.001 0.841 0.001 0.001 0.001 G | 0.001 0.001 0.001 0.841 0.001 0.001 T | 0.986 0.994 0.005 0.153 0.004 0.012
Position count matrix (PCM)
A | 1 0 15 0 99 98 C | 0 0 84 0 0 0 G | 0 0 0 84 0 0 T | 98 99 0 15 0 1
Position weight matrix (PWM)
A | -3.28 -4.38 -0.74 -4.16 1.13 1.13 C | -5.19 -5.19 1.54 -5.19 -5.19 -5.19 G | -5.19 -5.19 -5.19 1.54 -5.19 -5.19 T | 1.13 1.13 -4.16 -0.74 -4.38 -3.28
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 1
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
JHD1Foat et. al.P = 0.2524View matrix ↘
Fisher’s P-value0.2524
Information content13.28
Max PWM score13.23
Recommended cutoff7.17
Position frequency matrix (PFM)
A | 0.31 0.47 0.03 0.03 0.01 0.94 0.64 0.30 0.02 0.01 0.50 0.74 0.04 C | 0.01 0.10 0.18 0.43 0.96 0.01 0.04 0.68 0.06 0.06 0.01 0.17 0.01 G | 0.39 0.42 0.28 0.02 0.01 0.04 0.31 0.01 0.91 0.01 0.03 0.08 0.81 T | 0.29 0.01 0.52 0.52 0.02 0.01 0.01 0.01 0.01 0.93 0.46 0.01 0.15
Position count matrix (PCM)
A | 31 47 3 3 1 94 64 30 2 1 50 74 4 C | 1 10 18 43 96 1 4 68 6 6 1 17 1 G | 39 42 28 2 1 4 31 1 91 1 3 8 81 T | 28 1 52 52 2 1 1 1 1 93 46 1 15
Position weight matrix (PWM)
A | -0.03 0.38 -2.37 -2.37 -3.47 1.08 0.69 -0.06 -2.77 -3.47 0.45 0.84 -2.08 C | -2.89 -0.59 0.00 0.87 1.67 -2.89 -1.50 1.33 -1.10 -1.10 -2.89 -0.06 -2.89 G | 0.77 0.85 0.44 -2.20 -2.89 -1.50 0.54 -2.89 1.62 -2.89 -1.79 -0.81 1.50 T | -0.10 -3.47 0.49 0.49 -2.77 -3.47 -3.47 -3.47 -3.47 1.07 0.36 -3.47 -0.76
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data