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HMRA2
YCR096C, A2
Silenced copy of a2 at HMR; similarity to Alpha2p; required along with a1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content8.926
Max PWM score8.47
Recommended cutoff6.35
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.06 0.53 0.04 0.01 0.01 0.91 0.87 0.40 C | 0.67 0.01 0.01 0.01 0.01 0.01 0.02 0.08 G | 0.06 0.45 0.01 0.97 0.01 0.01 0.02 0.08 T | 0.21 0.01 0.94 0.01 0.97 0.07 0.09 0.44
Position count matrix (PCM)
A | 6 53 4 1 1 91 87 40 C | 67 1 1 1 1 1 2 8 G | 6 45 1 97 1 1 2 8 T | 21 1 94 1 97 7 9 44
Position weight matrix (PWM)
A | -1.67 0.50 -2.08 -3.47 -3.47 1.05 1.00 0.22 C | 1.31 -2.89 -2.89 -2.89 -2.89 -2.89 -2.20 -0.81 G | -1.10 0.92 -2.89 1.68 -2.89 -2.89 -2.20 -0.81 T | -0.42 -3.47 1.08 -3.47 1.11 -1.52 -1.27 0.32
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 0
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
No additional matrices in the original archive.
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 1 genes
MCM1