HAP4
YKL109W
Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.279 0.358 0.055 0.040 0.910 0.896 0.077 0.130 0.906 C | 0.103 0.247 0.853 0.687 0.024 0.033 0.064 0.606 0.025 G | 0.532 0.309 0.041 0.175 0.038 0.023 0.071 0.166 0.040 T | 0.086 0.085 0.052 0.098 0.029 0.048 0.787 0.099 0.030
A | 27 35 5 4 91 89 7 13 90 C | 10 24 85 68 2 3 6 60 2 G | 53 30 4 17 3 2 7 16 4 T | 8 8 5 9 2 4 78 9 3
A | -0.14 0.11 -1.76 -2.08 1.05 1.03 -1.42 -0.90 1.04 C | -0.56 0.32 1.56 1.34 -2.01 -1.70 -1.03 1.21 -1.97 G | 1.08 0.54 -1.48 -0.03 -1.56 -2.06 -0.93 -0.08 -1.50 T | -1.31 -1.33 -1.82 -1.18 -2.40 -1.90 0.90 -1.17 -2.37
Alternative candidate matrices 5
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
HAP4_AFoat et. al.P = 0.4463View matrix ↘
A | 0.03 0.02 0.49 0.95 0.42 0.01 0.22 0.01 0.38 0.89 0.01 0.01 0.37 0.84 0.05 C | 0.03 0.32 0.04 0.01 0.51 0.03 0.01 0.50 0.42 0.09 0.97 0.97 0.05 0.04 0.01 G | 0.11 0.02 0.35 0.01 0.05 0.95 0.01 0.01 0.10 0.02 0.01 0.01 0.19 0.01 0.01 T | 0.83 0.64 0.12 0.03 0.02 0.01 0.76 0.49 0.11 0.01 0.01 0.01 0.39 0.11 0.94
A | 3 2 49 95 42 1 22 1 38 89 1 1 37 84 5 C | 3 32 4 1 51 3 1 50 42 9 97 97 5 4 1 G | 11 2 35 1 5 95 1 1 10 2 1 1 19 1 1 T | 83 64 12 3 2 1 76 49 11 1 1 1 39 11 94
A | -2.37 -2.77 0.43 1.09 0.27 -3.47 -0.37 -3.47 0.17 1.02 -3.47 -3.47 0.15 0.97 -1.86 C | -1.79 0.58 -1.50 -2.89 1.04 -1.79 -2.89 1.02 0.85 -0.69 1.68 1.68 -1.28 -1.50 -2.89 G | -0.49 -2.20 0.66 -2.89 -1.28 1.66 -2.89 -2.89 -0.59 -2.20 -2.89 -2.89 0.05 -2.89 -2.89 T | 0.95 0.69 -0.98 -2.37 -2.77 -3.47 0.86 0.43 -1.07 -3.47 -3.47 -3.47 0.20 -1.07 1.08
HAP4_BFoat et. al.P = 0.01641View matrix ↘
A | 0.01 0.09 0.22 0.01 0.38 0.97 0.01 0.04 0.75 0.01 0.36 0.14 C | 0.30 0.44 0.38 0.91 0.26 0.01 0.04 0.01 0.22 0.54 0.40 0.26 G | 0.36 0.17 0.23 0.01 0.01 0.01 0.94 0.10 0.02 0.10 0.06 0.55 T | 0.34 0.29 0.17 0.08 0.36 0.01 0.01 0.85 0.01 0.34 0.18 0.05
A | 1 9 22 1 38 97 1 4 75 1 36 14 C | 30 44 38 91 26 1 4 1 22 54 40 26 G | 36 17 23 1 1 1 94 10 2 10 6 55 T | 34 28 17 8 36 1 1 85 1 34 18 5
A | -3.47 -1.27 -0.37 -3.47 0.17 1.11 -3.47 -2.08 0.85 -3.47 0.12 -0.83 C | 0.51 0.89 0.75 1.62 0.37 -2.89 -1.50 -2.89 0.20 1.10 0.80 0.37 G | 0.69 -0.06 0.25 -2.89 -2.89 -2.89 1.65 -0.59 -2.20 -0.59 -1.10 1.12 T | 0.06 -0.10 -0.63 -1.39 0.12 -3.47 -3.47 0.98 -3.47 0.06 -0.58 -1.86
HAP4_CFoat et. al.P = 1View matrix ↘
A | 0.01 0.18 0.38 0.86 0.01 0.01 0.50 0.33 0.35 0.24 0.01 0.73 0.16 0.08 0.22 0.01 0.36 0.58 0.08 0.11 0.43 0.01 0.01 0.03 0.03 0.01 C | 0.11 0.01 0.07 0.03 0.01 0.01 0.35 0.01 0.26 0.29 0.69 0.09 0.31 0.33 0.21 0.91 0.13 0.01 0.36 0.01 0.03 0.01 0.02 0.01 0.08 0.01 G | 0.87 0.25 0.41 0.10 0.97 0.01 0.01 0.23 0.18 0.19 0.12 0.16 0.12 0.57 0.39 0.01 0.05 0.20 0.45 0.58 0.01 0.97 0.96 0.15 0.01 0.52 T | 0.01 0.56 0.14 0.01 0.01 0.97 0.14 0.43 0.21 0.27 0.18 0.03 0.41 0.01 0.18 0.07 0.45 0.22 0.11 0.30 0.54 0.01 0.01 0.81 0.88 0.47
A | 1 18 38 86 1 1 50 33 35 24 1 73 16 8 22 1 36 57 8 11 43 1 1 3 3 1 C | 11 1 7 3 1 1 35 1 26 28 69 9 31 33 21 91 13 1 36 1 3 1 2 1 8 1 G | 87 25 41 10 97 1 1 23 18 19 12 16 12 56 39 1 5 20 45 57 1 97 96 15 1 52 T | 1 56 14 1 1 97 14 43 21 27 18 3 41 1 18 7 45 22 11 30 54 1 1 81 88 47
A | -3.47 -0.58 0.17 0.99 -3.47 -3.47 0.45 0.03 0.09 -0.29 -3.47 0.82 -0.69 -1.39 -0.37 -3.47 0.12 0.59 -1.39 -1.07 0.30 -3.47 -3.47 -2.37 -2.37 -3.47 C | -0.49 -2.89 -0.94 -1.79 -2.89 -2.89 0.66 -2.89 0.37 0.48 1.34 -0.69 0.54 0.61 0.15 1.62 -0.33 -2.89 0.69 -2.89 -1.79 -2.89 -2.20 -2.89 -0.81 -2.89 G | 1.58 0.33 0.82 -0.59 1.68 -2.89 -2.89 0.25 0.00 0.05 -0.41 -0.12 -0.41 1.15 0.77 -2.89 -1.28 0.11 0.92 1.17 -2.89 1.68 1.67 -0.18 -2.89 1.06 T | -3.47 0.56 -0.83 -3.47 -3.47 1.11 -0.83 0.30 -0.42 -0.17 -0.58 -2.37 0.25 -3.47 -0.58 -1.52 0.34 -0.37 -1.07 -0.06 0.52 -3.47 -3.47 0.93 1.01 0.38
HAP4Macisaac et. alP = 7.90e-28View matrix ↘
A | 0.456 0.001 0.053 0.980 0.989 0.001 0.070 0.903 0.401 0.403 0.240 0.268 0.224 0.226 0.456 C | 0.127 0.948 0.932 0.001 0.009 0.068 0.658 0.001 0.090 0.191 0.208 0.216 0.318 0.237 0.180 G | 0.219 0.022 0.001 0.001 0.001 0.001 0.121 0.050 0.397 0.209 0.247 0.235 0.205 0.303 0.165 T | 0.197 0.029 0.014 0.018 0.001 0.930 0.151 0.046 0.111 0.197 0.305 0.281 0.253 0.234 0.199
A | 45 0 5 98 98 0 7 90 40 40 24 26 22 22 45 C | 12 94 93 0 0 6 65 0 9 19 20 21 31 23 18 G | 21 2 0 0 0 0 12 5 39 20 24 23 20 30 16 T | 19 2 1 1 0 93 15 4 11 19 30 28 25 23 19
A | 0.35 -5.77 -1.80 1.12 1.13 -5.77 -1.52 1.04 0.23 0.23 -0.29 -0.18 -0.36 -0.35 0.35 C | -0.35 1.66 1.64 -5.19 -3.00 -0.97 1.30 -5.19 -0.69 0.06 0.14 0.18 0.57 0.28 0.00 G | 0.20 -2.10 -5.19 -5.19 -5.19 -5.19 -0.40 -1.28 0.79 0.15 0.32 0.27 0.13 0.52 -0.09 T | -0.49 -2.40 -3.13 -2.88 -5.77 1.07 -0.75 -1.94 -1.06 -0.49 -0.05 -0.13 -0.23 -0.31 -0.48
HAP4Pachkov et alP = 6.69e-20View matrix ↘
A | 0.001 0.060 1.000 0.001 0.001 0.001 0.001 0.034 0.051 C | 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.443 0.637 G | 0.001 0.934 0.001 0.001 0.001 1.000 0.927 0.079 0.035 T | 1.000 0.001 0.001 0.999 0.999 0.001 0.073 0.445 0.277
A | 0 6 100 0 0 0 0 3 5 C | 0 0 0 0 0 0 0 44 63 G | 0 93 0 0 0 100 92 7 3 T | 100 0 0 99 99 0 7 44 27
A | -5.77 -1.67 1.14 -5.77 -5.77 -5.77 -5.77 -2.24 -1.84 C | -5.19 -3.40 -5.19 -5.19 -5.19 -5.19 -5.19 0.90 1.26 G | -5.19 1.65 -5.19 -5.19 -5.19 1.71 1.64 -0.82 -1.64 T | 1.14 -5.77 -5.77 1.14 1.14 -5.77 -1.48 0.33 -0.14
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 126 genes
YBL001C, YBL030C, YBL044W, YBL045C, YBL099W, YBL109W, YBL111C, YBL112C, YBL113C, YBR039W, YBR048W, YBR099C, YCL065W, YCL066W, YCL067C, YCR039C, YCR040W, YCR041W, YCR105W, YDL004W, YDL005C, YDL066W, YDL067C, YDL181W, YDR042C, YDR148C, YDR150W, YDR210W-D, YDR298C, YDR299W, YDR377W, YDR473C, YDR474C, YDR529C, YDR543C, YDR544C, YDR545W, YEL001C, YEL008W, YEL009C, YEL024W, YEL025C, YFL001W, YFL002C, YFR001W, YFR033C, YGL001C, YGL103W, YGL104C, YGL187C, YGL191W, YGL193C, YGR183C, YGR296W, YHL049C, YHR001W, YHR001W-A, YHR002W, YHR003C, YHR051W, YHR052W, YHR091C, YHR193C, YHR194W, YIL174W, YIL175W, YJL191W, YJL192C, YJR001W, YJR077C, YJR078W, YJR079W, YJR082C, YJR121W, YKL015W, YKL016C, YKL146W, YKL148C, YLL065W, YLR038C, YLR166C, YLR167W, YLR168C, YLR169W, YLR171W, YLR207W, YLR294C, YLR295C, YLR296W, YLR395C, YLR463C, YLR465C, YLR467W, YML081W, YML088W, YML089C, YML091C, YML119W, YML120C, YML132W, YML133C, YMR194W, YMR256C, YNL052W, YNL054W-A, YNL054W-B, YNL055C, YNL070W, YNL337W, YNL338W, YNL339C, YOL001W, YOL002C, YOR064C, YOR065W, YOR187W, YPL251W, YPL253C, YPL270W, YPL271W, YPL283C, YPR020W, YPR190C, YPR191W, YPR202W, YPR203W
Genes affected by TF deletion 69 genes
YBR158W, YHR143W, YOR065W, YGL168W, YPL240C, YHR051W, YHR053C, YHR055C, YJR147W, YKL016C, YNL143C, YPL078C, YFR016C, YFR006W, YLL065W, YIL156W, YLR286C, YNR067C, YOR263C, YLR131C, YER152C, YER124C, YJR025C, YLR285W, YOR230W, YOR264W, YJR148W, YKR023W, YDR106W, YFL051C, YGR041W, YOR298W, YPL195W, YDL200C, YML091C, YPL092W, YFL021W, YMR110C, YNR001C, YIR015W, YKR093W, YLR042C, YPL066W, YMR027W, YNL066W, YOL028C, YGL028C, YMR173W-A, YPL063W, YHR037W, YIR019C, YOR367W, YOL119C, YHR018C, YMR186W, YOR027W, YOR059C, YDR425W, YGL255W, YMR062C, YBR244W, YKL067W, YLR079W, YLR458W, YMR213W, YDR040C, YLR360W, YOR034C, YNL327W
Genes supported by both experiments 5 genes
YHR051W, YKL016C, YLL065W, YML091C, YOR065W
Predicted TF–TF partners 3 genes
RDS1, RSC3, SUT1