← All factors / TF RECORD
GZF3
YJL110C, NIL2, DEH1
GATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.002143
Information content8.595
Max PWM score7.76
Recommended cutoff3.99
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.18 0.01 0.97 0.01 0.97 0.72 0.04 C | 0.39 0.01 0.01 0.01 0.01 0.09 0.37 G | 0.02 0.97 0.01 0.01 0.01 0.01 0.58 T | 0.41 0.01 0.01 0.97 0.01 0.18 0.01
Position count matrix (PCM)
A | 18 1 97 1 97 72 4 C | 39 1 1 1 1 9 37 G | 2 97 1 1 1 1 57 T | 41 1 1 97 1 18 1
Position weight matrix (PWM)
A | -0.58 -3.47 1.11 -3.47 1.11 0.81 -2.08 C | 0.77 -2.89 -2.89 -2.89 -2.89 -0.69 0.72 G | -2.20 1.68 -2.89 -2.89 -2.89 -2.89 1.17 T | 0.25 -3.47 -3.47 1.11 -3.47 -0.58 -3.47
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 9
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
GZF3_AFoat et. al.P = 1View matrix ↘
Fisher’s P-value1
Information content21.17
Max PWM score23.61
Recommended cutoff17.71
Position frequency matrix (PFM)
A | 0.10 0.04 0.02 0.04 0.01 0.97 0.36 0.40 0.66 0.14 0.34 0.14 0.21 0.03 0.07 0.11 0.13 0.18 0.18 0.96 0.02 0.01 0.43 0.36 C | 0.61 0.33 0.32 0.01 0.01 0.01 0.20 0.05 0.01 0.47 0.49 0.24 0.33 0.59 0.56 0.46 0.19 0.40 0.01 0.01 0.01 0.97 0.49 0.01 G | 0.06 0.31 0.66 0.01 0.97 0.01 0.44 0.02 0.29 0.36 0.04 0.33 0.01 0.01 0.36 0.23 0.50 0.41 0.01 0.01 0.01 0.01 0.01 0.16 T | 0.23 0.32 0.01 0.94 0.01 0.01 0.01 0.53 0.05 0.02 0.13 0.29 0.45 0.37 0.01 0.20 0.18 0.01 0.81 0.02 0.96 0.01 0.08 0.48
Position count matrix (PCM)
A | 10 4 2 4 1 97 36 40 66 14 34 14 21 3 7 11 13 18 18 96 2 1 43 36 C | 61 33 32 1 1 1 20 5 1 47 49 24 33 59 56 46 19 40 1 1 1 97 49 1 G | 6 31 66 1 97 1 44 2 28 36 4 33 1 1 36 23 50 41 1 1 1 1 1 16 T | 23 32 1 94 1 1 1 53 5 2 13 28 45 37 1 20 18 1 81 2 96 1 8 48
Position weight matrix (PWM)
A | -1.16 -2.08 -2.77 -2.08 -3.47 1.11 0.12 0.22 0.72 -0.83 0.06 -0.83 -0.42 -2.37 -1.52 -1.07 -0.90 -0.58 -0.58 1.10 -2.77 -3.47 0.30 0.12 C | 1.22 0.61 0.58 -2.89 -2.89 -2.89 0.11 -1.28 -2.89 0.96 1.00 0.29 0.61 1.19 1.13 0.94 0.05 0.80 -2.89 -2.89 -2.89 1.68 1.00 -2.89 G | -1.10 0.54 1.30 -2.89 1.68 -2.89 0.89 -2.20 0.48 0.69 -1.50 0.61 -2.89 -2.89 0.69 0.25 1.02 0.82 -2.89 -2.89 -2.89 -2.89 -2.89 -0.12 T | -0.33 0.00 -3.47 1.08 -3.47 -3.47 -3.47 0.50 -1.86 -2.77 -0.90 -0.10 0.34 0.15 -3.47 -0.47 -0.58 -3.47 0.93 -2.77 1.10 -3.47 -1.39 0.41
GZF3_BFoat et. al.P = 7.59e-05View matrix ↘
Fisher’s P-value7.59e-05
Information content19.09
Max PWM score18.8
Recommended cutoff9.5
Position frequency matrix (PFM)
A | 0.49 0.16 0.42 0.94 0.01 0.01 0.78 0.05 0.03 0.34 0.01 0.01 0.07 0.97 0.32 0.60 0.01 C | 0.43 0.57 0.13 0.04 0.97 0.97 0.20 0.45 0.08 0.01 0.79 0.93 0.76 0.01 0.01 0.07 0.20 G | 0.05 0.01 0.10 0.01 0.01 0.01 0.01 0.01 0.88 0.38 0.19 0.05 0.17 0.01 0.01 0.03 0.03 T | 0.03 0.26 0.35 0.01 0.01 0.01 0.01 0.50 0.01 0.28 0.02 0.01 0.01 0.01 0.67 0.29 0.77
Position count matrix (PCM)
A | 49 16 42 94 1 1 78 5 3 34 1 1 7 97 32 60 1 C | 43 56 13 4 97 97 20 45 8 1 79 93 76 1 1 7 20 G | 5 1 10 1 1 1 1 1 88 38 19 5 17 1 1 3 3 T | 3 26 35 1 1 1 1 50 1 28 2 1 1 1 67 28 77
Position weight matrix (PWM)
A | 0.43 -0.69 0.27 1.08 -3.47 -3.47 0.89 -1.86 -2.37 0.06 -3.47 -3.47 -1.52 1.11 0.00 0.63 -3.47 C | 0.87 1.15 -0.33 -1.50 1.68 1.68 0.11 0.92 -0.81 -2.89 1.48 1.64 1.44 -2.89 -2.89 -0.94 0.11 G | -1.28 -2.89 -0.59 -2.89 -2.89 -2.89 -2.89 -2.89 1.59 0.75 0.05 -1.28 -0.06 -2.89 -2.89 -1.79 -1.79 T | -2.37 -0.21 0.09 -3.47 -3.47 -3.47 -3.47 0.45 -3.47 -0.13 -2.77 -3.47 -3.47 -3.47 0.74 -0.10 0.88
GZF3_CFoat et. al.P = 0.04276View matrix ↘
Fisher’s P-value0.04276
Information content12.97
Max PWM score15.34
Recommended cutoff11.46
Position frequency matrix (PFM)
A | 0.29 0.02 0.38 0.01 0.71 0.02 0.34 0.35 0.01 0.16 0.04 0.01 0.86 0.08 0.19 0.92 C | 0.01 0.57 0.28 0.51 0.01 0.02 0.11 0.01 0.12 0.34 0.01 0.55 0.01 0.28 0.50 0.03 G | 0.18 0.21 0.01 0.46 0.07 0.80 0.46 0.04 0.45 0.45 0.01 0.01 0.01 0.63 0.31 0.01 T | 0.52 0.20 0.33 0.02 0.21 0.15 0.09 0.60 0.43 0.04 0.94 0.44 0.13 0.01 0.01 0.04
Position count matrix (PCM)
A | 28 2 38 1 71 2 34 35 1 16 4 1 86 8 19 92 C | 1 56 28 51 1 2 11 1 12 34 1 55 1 28 50 3 G | 18 21 1 46 7 80 46 4 45 45 1 1 1 63 31 1 T | 52 20 33 2 21 15 9 60 43 4 94 44 13 1 1 4
Position weight matrix (PWM)
A | -0.10 -2.77 0.17 -3.47 0.80 -2.77 0.06 0.09 -3.47 -0.69 -2.08 -3.47 0.99 -1.39 -0.52 1.06 C | -2.89 1.15 0.44 1.04 -2.89 -2.20 -0.49 -2.89 -0.41 0.64 -2.89 1.12 -2.89 0.44 1.02 -1.79 G | 0.00 0.15 -2.89 0.94 -0.94 1.49 0.94 -1.50 0.92 0.92 -2.89 -2.89 -2.89 1.25 0.54 -2.89 T | 0.49 -0.47 0.03 -2.77 -0.42 -0.76 -1.27 0.63 0.30 -2.08 1.08 0.32 -0.90 -3.47 -3.47 -2.08
GZF3Harbison et. al.P = 0.6609View matrix ↘
Fisher’s P-value0.6609
Information content9.887
Max PWM score7.76
Recommended cutoff7.76
Position frequency matrix (PFM)
A | 0.012 0.964 0.012 0.964 0.964 0.012 C | 0.012 0.012 0.012 0.012 0.012 0.012 G | 0.965 0.012 0.012 0.012 0.012 0.965 T | 0.012 0.012 0.964 0.012 0.012 0.012
Position count matrix (PCM)
A | 1 96 1 96 96 1 C | 1 1 1 1 1 1 G | 96 1 1 1 1 96 T | 1 1 96 1 1 1
Position weight matrix (PWM)
A | -3.28 1.10 -3.28 1.10 1.10 -3.28 C | -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 G | 1.68 -2.71 -2.71 -2.71 -2.71 1.68 T | -3.28 -3.28 1.10 -3.28 -3.28 -3.28
GZF3Macisaac et. alP = 0.6609View matrix ↘
Fisher’s P-value0.6609
Information content9.879
Max PWM score7.76
Recommended cutoff7.76
Position frequency matrix (PFM)
A | 0.012 0.964 0.012 0.964 0.964 0.012 C | 0.012 0.012 0.012 0.012 0.012 0.012 G | 0.964 0.012 0.012 0.012 0.012 0.964 T | 0.012 0.012 0.964 0.012 0.012 0.012
Position count matrix (PCM)
A | 1 96 1 96 96 1 C | 1 1 1 1 1 1 G | 96 1 1 1 1 96 T | 1 1 96 1 1 1
Position weight matrix (PWM)
A | -3.28 1.10 -3.28 1.10 1.10 -3.28 C | -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 G | 1.68 -2.71 -2.71 -2.71 -2.71 1.68 T | -3.28 -3.28 1.10 -3.28 -3.28 -3.28
GZF3Morozov et. al.P = 0.3033View matrix ↘
Fisher’s P-value0.3033
Information content3.577
Max PWM score4.37
Recommended cutoff2.66
Position frequency matrix (PFM)
A | 0.556 0.063 0.056 0.077 C | 0.185 0.126 0.874 0.108 G | 0.161 0.077 0.035 0.734 T | 0.098 0.734 0.035 0.080
Position count matrix (PCM)
A | 55 6 5 7 C | 18 12 87 10 G | 16 7 3 73 T | 9 73 3 8
Position weight matrix (PWM)
A | 0.55 -1.63 -1.74 -1.42 C | 0.03 -0.36 1.58 -0.51 G | -0.11 -0.85 -1.64 1.41 T | -1.18 0.83 -2.21 -1.39
GZF3Pachkov et alP = 0.3923View matrix ↘
Fisher’s P-value0.3923
Information content16.22
Max PWM score12.26
Recommended cutoff8.3
Position frequency matrix (PFM)
A | 1.000 0.001 0.001 0.114 0.001 0.001 0.500 1.000 0.001 0.001 C | 0.001 0.001 0.683 0.001 1.000 0.001 0.001 0.001 0.001 1.000 G | 0.001 0.205 0.001 0.886 0.001 0.001 0.001 0.001 0.001 0.001 T | 0.001 0.795 0.317 0.001 0.001 1.000 0.500 0.001 1.000 0.001
Position count matrix (PCM)
A | 100 0 0 11 0 0 50 100 0 0 C | 0 0 68 0 100 0 0 0 0 100 G | 0 20 0 88 0 0 0 0 0 0 T | 0 79 31 0 0 100 50 0 100 0
Position weight matrix (PWM)
A | 1.14 -5.77 -5.77 -1.03 -5.77 -5.77 0.45 1.14 -5.77 -5.77 C | -5.19 -5.19 1.33 -5.19 1.71 -5.19 -5.19 -5.19 -5.19 1.71 G | -5.19 0.13 -5.19 1.59 -5.19 -5.19 -5.19 -5.19 -5.19 -5.19 T | -5.77 0.91 -0.01 -5.77 -5.77 1.14 0.45 -5.77 1.14 -5.77
GZF3Zhu et. al.P = 0.1273View matrix ↘
Fisher’s P-value0.1273
Information content13.22
Max PWM score14.43
Recommended cutoff7.54
Position frequency matrix (PFM)
A | 0.15 0.26 0.26 0.26 0.26 0.32 0.13 0.04 0.01 0.97 0.01 0.96 0.97 0.01 0.27 C | 0.08 0.24 0.27 0.33 0.16 0.07 0.72 0.27 0.01 0.01 0.01 0.01 0.01 0.06 0.22 G | 0.16 0.22 0.27 0.18 0.36 0.43 0.04 0.01 0.97 0.01 0.01 0.01 0.01 0.93 0.49 T | 0.61 0.28 0.20 0.24 0.22 0.17 0.11 0.69 0.01 0.01 0.97 0.02 0.01 0.01 0.01
Position count matrix (PCM)
A | 15 26 26 26 26 32 13 4 1 97 1 96 97 1 27 C | 8 24 27 33 16 7 72 27 1 1 1 1 1 6 22 G | 16 22 27 18 36 43 4 1 97 1 1 1 1 93 49 T | 61 28 20 24 22 17 11 69 1 1 97 2 1 1 1
Position weight matrix (PWM)
A | -0.76 -0.21 -0.21 -0.21 -0.21 0.00 -0.90 -2.08 -3.47 1.11 -3.47 1.10 1.11 -3.47 -0.17 C | -0.81 0.29 0.41 0.61 -0.12 -0.94 1.39 0.41 -2.89 -2.89 -2.89 -2.89 -2.89 -1.10 0.20 G | -0.12 0.20 0.41 0.00 0.69 0.87 -1.50 -2.89 1.68 -2.89 -2.89 -2.89 -2.89 1.64 1.00 T | 0.65 -0.13 -0.47 -0.29 -0.37 -0.63 -1.07 0.77 -3.47 -3.47 1.11 -2.77 -3.47 -3.47 -3.47
GZF3Zhao and StormoP = 0.006861View matrix ↘
Fisher’s P-value0.006861
Information content4.388
Max PWM score5.5
Recommended cutoff4.27
Position frequency matrix (PFM)
A | 0.086 0.932 0.097 0.679 0.496 0.196 C | 0.042 0.001 0.026 0.062 0.138 0.269 G | 0.828 0.013 0.037 0.032 0.210 0.378 T | 0.044 0.054 0.840 0.226 0.156 0.157
Position count matrix (PCM)
A | 8 93 9 67 49 19 C | 4 0 2 6 13 26 G | 82 1 3 3 21 37 T | 4 5 84 22 15 15
Position weight matrix (PWM)
A | -1.31 1.07 -1.19 0.75 0.44 -0.49 C | -1.46 -5.19 -1.93 -1.07 -0.27 0.40 G | 1.53 -2.63 -1.58 -1.73 0.15 0.74 T | -1.98 -1.78 0.97 -0.35 -0.72 -0.71
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 63 genes
YBR232C, YCL074W, YCR082W, YCR091W, YCR105W, YDL077C, YDR080W, YDR117C, YDR118W, YDR210W-D, YDR282C, YDR355C, YDR494W, YEL031W, YER002W, YER047C, YFR026C, YGL001C, YGL156W, YGL171W, YGR089W, YGR218W, YHL048W, YHR074W, YHR118C, YHR119W, YHR120W, YJL203W, YJL204C, YJR125C, YKL136W, YKL143W, YKL144C, YKL204W, YKR022C, YKR023W, YKR105C, YKR106W, YLL047W, YLL048C, YLR083C, YLR127C, YLR128W, YLR265C, YLR339C, YLR341W, YLR456W, YMR268C, YMR269W, YMR287C, YMR288W, YNR068C, YOL160W, YOR021C, YOR090C, YOR091W, YPL180W, YPL182C, YPL215W, YPR081C, YPR092W, YPR121W, YPR197C
Genes affected by TF deletion 45 genes
YHL016C, YKR039W, YOR065W, YFR033C, YPL016W, YPR138C, YIR032C, YML027W, YML089C, YOR129C, YBR093C, YNL142W, YDR281C, YMR253C, YMR023C, YLR099C, YOR074C, YNL183C, YOL144W, YER038C, YHR215W, YFL021W, YOL143C, YAR071W, YCL025C, YFL001W, YLR420W, YNL223W, YNL289W, YGL249W, YHR128W, YEL002C, YOL126C, YDR481C, YBL042C, YKL216W, YGL228W, YMR002W, YNL105W, YHR136C, YGL255W, YJL110C, YDR524C, YNL141W, YOL101C
Predicted TF–TF partners 1 genes
DAL80