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GSM1
YJL103C
Putative zinc cluster protein of unknown function; proposed to be involved in the regulation of energy metabolism, based on patterns of expression and sequence analysis
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value0.0006545
Information content8.519
Max PWM score7.18
Recommended cutoff3.68
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.02 0.01 0.01 0.05 0.58 C | 0.94 0.97 0.07 0.01 0.07 G | 0.02 0.01 0.91 0.93 0.26 T | 0.02 0.01 0.01 0.01 0.09
Position count matrix (PCM)
A | 2 1 1 5 57 C | 94 97 7 1 7 G | 2 1 91 93 26 T | 2 1 1 1 9
Position weight matrix (PWM)
A | -2.77 -3.47 -3.47 -1.86 0.59 C | 1.65 1.68 -0.94 -2.89 -0.94 G | -2.20 -2.89 1.62 1.64 0.37 T | -2.77 -3.47 -3.47 -3.47 -1.27
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
GSM1Zhu et. al.P = 0.6877View matrix ↘
Fisher’s P-value0.6877
Information content12.83
Max PWM score11.63
Recommended cutoff6.5
Position frequency matrix (PFM)
A | 0.57 0.85 0.40 0.01 0.01 0.01 0.01 0.01 0.14 0.71 C | 0.02 0.01 0.16 0.91 0.18 0.97 0.96 0.03 0.01 0.06 G | 0.02 0.02 0.18 0.01 0.04 0.01 0.03 0.95 0.84 0.20 T | 0.39 0.12 0.25 0.07 0.77 0.01 0.01 0.01 0.01 0.03
Position count matrix (PCM)
A | 56 85 40 1 1 1 1 1 14 71 C | 2 1 16 91 18 97 96 3 1 6 G | 2 2 18 1 4 1 3 95 84 20 T | 39 12 25 7 77 1 1 1 1 3
Position weight matrix (PWM)
A | 0.58 0.98 0.22 -3.47 -3.47 -3.47 -3.47 -3.47 -0.83 0.80 C | -2.20 -2.89 -0.12 1.62 0.00 1.68 1.67 -1.79 -2.89 -1.10 G | -2.20 -2.20 0.00 -2.89 -1.50 -2.89 -1.79 1.66 1.54 0.11 T | 0.20 -0.98 -0.25 -1.52 0.88 -3.47 -3.47 -3.47 -3.47 -2.37
GSM1Zhao and StormoP = 0.004516View matrix ↘
Fisher’s P-value0.004516
Information content6.488
Max PWM score6.15
Recommended cutoff4.91
Position frequency matrix (PFM)
A | 0.090 0.112 0.020 0.001 0.001 C | 0.490 0.247 0.940 0.867 0.113 G | 0.170 0.192 0.001 0.131 0.885 T | 0.251 0.449 0.039 0.001 0.001
Position count matrix (PCM)
A | 9 11 2 0 0 C | 49 24 94 86 11 G | 17 19 0 13 88 T | 25 44 3 0 0
Position weight matrix (PWM)
A | -1.27 -1.05 -2.77 -5.77 -5.77 C | 1.00 0.32 1.65 1.57 -0.47 G | -0.06 0.06 -5.19 -0.32 1.59 T | -0.24 0.34 -2.10 -5.77 -5.77
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 16 genes
AFT2, GIS1, MIG3, MSN2, MSN4, PDR3, PDR8, PHD1, RGM1, RGT1, RSC3, STP1, SUT1, SUT2, USV1, YPR196W