GLN3
YER040W
Transcriptional activator of genes regulated by nitrogen catabolite repression (NCR), localization and activity regulated by quality of nitrogen source
Best-performing DNA-binding model.
View and copy the recommended matrices ↘
A | 0.013 0.910 0.012 0.789 0.941 0.033 0.679 0.285 0.564 C | 0.018 0.016 0.012 0.005 0.004 0.083 0.152 0.092 0.097 G | 0.962 0.067 0.002 0.056 0.049 0.858 0.145 0.132 0.150 T | 0.007 0.007 0.974 0.151 0.006 0.025 0.023 0.491 0.188
A | 1 91 1 78 94 3 67 28 56 C | 1 1 1 0 0 8 15 9 9 G | 96 6 0 5 4 85 14 13 15 T | 0 0 97 15 0 2 2 49 18
A | -3.20 1.05 -3.28 0.90 1.08 -2.27 0.75 -0.12 0.57 C | -2.30 -2.42 -2.71 -3.58 -3.81 -0.77 -0.17 -0.67 -0.62 G | 1.68 -0.99 -4.50 -1.17 -1.30 1.56 -0.22 -0.31 -0.18 T | -3.82 -3.82 1.11 -0.75 -3.98 -2.55 -2.63 0.43 -0.53
Alternative candidate matrices 9
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
GLN3Badis et. al.P = 6.02e-06View matrix ↘
A | 0.01 0.97 0.01 0.73 0.60 C | 0.01 0.01 0.01 0.01 0.01 G | 0.97 0.01 0.01 0.01 0.27 T | 0.01 0.01 0.97 0.25 0.12
A | 1 97 1 73 60 C | 1 1 1 1 1 G | 97 1 1 1 27 T | 1 1 97 25 12
A | -3.47 1.11 -3.47 0.82 0.63 C | -2.89 -2.89 -2.89 -2.89 -2.89 G | 1.68 -2.89 -2.89 -2.89 0.41 T | -3.47 -3.47 1.11 -0.25 -0.98
GLN3_AFoat et. al.P = 6.75e-13View matrix ↘
A | 0.01 0.06 0.01 0.33 0.97 0.01 0.01 0.28 C | 0.30 0.79 0.08 0.01 0.01 0.07 0.97 0.01 G | 0.26 0.12 0.01 0.01 0.01 0.01 0.01 0.17 T | 0.44 0.02 0.91 0.65 0.01 0.91 0.01 0.54
A | 1 6 1 33 97 1 1 28 C | 30 79 8 1 1 7 97 1 G | 26 12 1 1 1 1 1 17 T | 44 2 91 65 1 91 1 54
A | -3.47 -1.67 -3.47 0.03 1.11 -3.47 -3.47 -0.13 C | 0.51 1.48 -0.81 -2.89 -2.89 -0.94 1.68 -2.89 G | 0.37 -0.41 -2.89 -2.89 -2.89 -2.89 -2.89 -0.06 T | 0.32 -2.77 1.05 0.71 -3.47 1.05 -3.47 0.52
GLN3_BFoat et. al.P = 6.98e-08View matrix ↘
A | 0.41 0.35 0.20 0.32 0.83 0.37 0.93 0.75 0.97 0.56 0.01 0.54 0.26 C | 0.01 0.42 0.25 0.58 0.15 0.18 0.05 0.23 0.01 0.43 0.62 0.09 0.10 G | 0.18 0.22 0.15 0.01 0.01 0.44 0.01 0.01 0.01 0.01 0.36 0.37 0.63 T | 0.40 0.01 0.40 0.09 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
A | 41 35 20 32 83 37 93 75 97 56 1 54 26 C | 1 42 25 57 15 18 5 23 1 43 62 9 10 G | 18 22 15 1 1 44 1 1 1 1 36 37 63 T | 40 1 40 9 1 1 1 1 1 1 1 1 1
A | 0.25 0.09 -0.47 0.00 0.95 0.15 1.07 0.85 1.11 0.56 -3.47 0.52 -0.21 C | -2.89 0.85 0.33 1.17 -0.18 0.00 -1.28 0.25 -2.89 0.87 1.24 -0.69 -0.59 G | 0.00 0.20 -0.18 -2.89 -2.89 0.89 -2.89 -2.89 -2.89 -2.89 0.69 0.72 1.25 T | 0.22 -3.47 0.22 -1.27 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47
GLN3_CFoat et. al.P = 0.1978View matrix ↘
A | 0.46 0.07 0.94 0.01 0.01 0.23 0.35 0.20 0.40 0.12 0.18 0.35 0.01 0.81 0.06 0.01 0.21 C | 0.01 0.12 0.01 0.97 0.79 0.26 0.62 0.76 0.37 0.26 0.26 0.08 0.96 0.04 0.48 0.34 0.50 G | 0.15 0.35 0.04 0.01 0.01 0.05 0.02 0.01 0.12 0.51 0.34 0.14 0.01 0.01 0.44 0.27 0.01 T | 0.39 0.46 0.01 0.01 0.20 0.45 0.01 0.03 0.11 0.11 0.22 0.43 0.02 0.14 0.02 0.38 0.29
A | 46 7 94 1 1 23 35 20 40 12 18 35 1 81 6 1 21 C | 1 12 1 97 79 26 62 76 37 26 26 8 96 4 48 34 50 G | 15 35 4 1 1 5 2 1 12 51 34 14 1 1 44 27 1 T | 39 46 1 1 20 45 1 3 11 11 22 43 2 14 2 38 28
A | 0.36 -1.52 1.08 -3.47 -3.47 -0.33 0.09 -0.47 0.22 -0.98 -0.58 0.09 -3.47 0.93 -1.67 -3.47 -0.42 C | -2.89 -0.41 -2.89 1.68 1.48 0.37 1.24 1.44 0.72 0.37 0.37 -0.81 1.67 -1.50 0.98 0.64 1.02 G | -0.18 0.66 -1.50 -2.89 -2.89 -1.28 -2.20 -2.89 -0.41 1.04 0.64 -0.25 -2.89 -2.89 0.89 0.41 -2.89 T | 0.20 0.36 -3.47 -3.47 -0.47 0.34 -3.47 -2.37 -1.07 -1.07 -0.37 0.30 -2.77 -0.83 -2.77 0.17 -0.10
GLN3Macisaac et. alP = 1.35e-11View matrix ↘
A | 0.563 0.102 0.826 0.004 0.747 0.803 0.007 0.663 0.303 0.571 C | 0.198 0.020 0.017 0.067 0.048 0.001 0.132 0.078 0.051 0.107 G | 0.021 0.856 0.152 0.001 0.115 0.160 0.603 0.239 0.036 0.175 T | 0.218 0.022 0.005 0.928 0.090 0.036 0.258 0.020 0.610 0.147
A | 56 10 82 0 74 80 0 66 30 57 C | 19 2 1 6 4 0 13 7 5 10 G | 2 85 15 0 11 16 60 23 3 17 T | 21 2 0 92 9 3 25 2 61 14
A | 0.56 -1.14 0.95 -4.38 0.85 0.92 -3.82 0.73 -0.05 0.58 C | 0.10 -2.20 -2.36 -0.99 -1.32 -5.19 -0.31 -0.84 -1.26 -0.52 G | -2.15 1.56 -0.17 -5.19 -0.45 -0.12 1.21 0.28 -1.61 -0.03 T | -0.38 -2.68 -4.16 1.06 -1.27 -2.18 -0.22 -2.77 0.65 -0.78
GLN3Morozov et. al.P = 0View matrix ↘
A | 0.047 0.581 0.060 C | 0.041 0.101 0.080 G | 0.883 0.270 0.078 T | 0.029 0.049 0.782
A | 4 58 6 C | 4 10 8 G | 88 27 7 T | 2 4 78
A | -1.92 0.60 -1.67 C | -1.48 -0.58 -0.81 G | 1.59 0.41 -0.84 T | -2.40 -1.88 0.89
GLN3Pachkov et alP = 5.89e-14View matrix ↘
A | 0.448 0.001 1.000 0.001 0.878 0.877 0.010 0.544 0.286 C | 0.204 0.001 0.001 0.001 0.001 0.001 0.001 0.219 0.147 G | 0.001 1.000 0.001 0.001 0.001 0.114 0.981 0.185 0.204 T | 0.349 0.001 0.001 1.000 0.122 0.009 0.010 0.051 0.364
A | 44 0 100 0 87 87 1 54 28 C | 20 0 0 0 0 0 0 21 14 G | 0 100 0 0 0 11 98 18 20 T | 34 0 0 100 12 0 1 5 36
A | 0.34 -5.77 1.14 -5.77 1.01 1.01 -3.47 0.53 -0.11 C | 0.13 -5.19 -5.19 -5.19 -5.19 -5.19 -5.19 0.20 -0.20 G | -5.19 1.71 -5.19 -5.19 -5.19 -0.46 1.70 0.03 0.13 T | 0.09 -5.77 -5.77 1.14 -0.96 -3.57 -3.47 -1.84 0.13
GLN3Zhu et. al.P = 0.0001455View matrix ↘
A | 0.26 0.34 0.30 0.18 0.03 0.03 0.09 0.01 0.05 0.97 0.01 0.01 0.63 0.29 C | 0.06 0.12 0.25 0.05 0.32 0.83 0.50 0.04 0.01 0.01 0.01 0.97 0.01 0.08 G | 0.03 0.17 0.16 0.69 0.52 0.05 0.21 0.01 0.01 0.01 0.01 0.01 0.12 0.53 T | 0.65 0.37 0.29 0.08 0.13 0.08 0.20 0.94 0.93 0.01 0.97 0.01 0.24 0.10
A | 26 34 30 18 3 3 9 1 5 97 1 1 63 28 C | 6 12 25 5 32 83 50 4 1 1 1 97 1 8 G | 3 17 16 69 52 5 21 1 1 1 1 1 12 53 T | 65 37 28 8 13 8 20 94 93 1 97 1 24 10
A | -0.21 0.06 -0.06 -0.58 -2.37 -2.37 -1.27 -3.47 -1.86 1.11 -3.47 -3.47 0.68 -0.10 C | -1.10 -0.41 0.33 -1.28 0.58 1.53 1.02 -1.50 -2.89 -2.89 -2.89 1.68 -2.89 -0.81 G | -1.79 -0.06 -0.12 1.34 1.06 -1.28 0.15 -2.89 -2.89 -2.89 -2.89 -2.89 -0.41 1.08 T | 0.71 0.15 -0.10 -1.39 -0.90 -1.39 -0.47 1.08 1.07 -3.47 1.11 -3.47 -0.29 -1.16
GLN3Zhao and StormoP = 5.34e-11View matrix ↘
A | 0.003 0.995 0.001 0.722 0.583 0.168 C | 0.004 0.001 0.008 0.028 0.086 0.286 G | 0.989 0.001 0.001 0.012 0.242 0.360 T | 0.004 0.003 0.990 0.238 0.089 0.186
A | 0 99 0 72 58 16 C | 0 0 0 2 8 28 G | 98 0 0 1 24 36 T | 0 0 99 23 8 18
A | -4.67 1.13 -5.77 0.81 0.60 -0.64 C | -3.81 -5.19 -3.11 -1.86 -0.74 0.46 G | 1.70 -5.19 -5.19 -2.71 0.30 0.69 T | -4.38 -4.67 1.13 -0.30 -1.28 -0.54
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 65 genes
YAL017W, YAL018C, YBL012C, YCL065W, YCL066W, YCL067C, YCR028C, YCR039C, YCR040W, YCR041W, YCR105W, YDL091C, YDL152W, YDL170W, YDL171C, YDL236W, YDR003W, YDR030C, YDR031W, YDR185C, YDR294C, YDR361C, YDR372C, YDR373W, YDR498C, YDR499W, YDR523C, YDR543C, YEL004W, YEL005C, YEL008W, YEL009C, YER007C-A, YER133W, YFR007W, YFR023W, YGR024C, YGR191W, YHR038W, YHR171W, YHR193C, YHR194W, YJL023C, YJL148W, YJR007W, YJR100C, YKL072W, YLR166C, YLR167W, YLR463C, YLR465C, YLR467W, YNL259C, YNR006W, YOR102W, YOR106W, YOR115C, YOR218C, YOR223W, YOR268C, YOR269W, YPL018W, YPL019C, YPR035W, YPR145W
Genes affected by TF deletion 290 genes
YBR006W, YCR012W, YCR040W, YDR034W-B, YGL234W, YGR280C, YIL082W-A, YML112W, YMR043W, YML116W, YNL016W, YOR195W, YBR187W, YDL128W, YDR192C, YGL009C, YHR143W, YHR174W, YKL049C, YLR058C, YNL277W, YOR377W, YPL049C, YBR031W, YCL049C, YCR013C, YCL054W, YJR015W, YKR076W, YLR247C, YML113W, YMR044W, YNL078W, YNL053W, YNR056C, YOR222W, YPL242C, YCR097W-A, YFR035C, YGL012W, YGR155W, YGR157W, YHR143W-A, YLR089C, YMR191W, YOR382W, YPR138C, YBR124W, YDL003W, YDR096W, YDR496C, YFR007W, YHR053C, YHR025W, YJR145C, YKL014C, YJR116W, YJR147W, YKL018W, YLR340W, YMR101C, YNL149C, YOR285W, YOR315W, YOR351C, YPL268W, YPL187W, YBR283C, YER026C, YGR180C, YGR212W, YGR214W, YHR208W, YML023C, YML058W-A, YMR312W, YBR093C, YBR067C, YDR461W, YDR497C, YFR008W, YHR084W, YHR026W, YJR115W, YLL061W, YLR339C, YNL146W, YOL109W, YOR316C, YPR013C, YPR015C, YCL012W, YCL018W, YBR256C, YDR281C, YGR185C, YIL015W, YLR185W, YML055W, YMR251W-A, YNL332W, YCL065W, YDR012W, YIL086C, YIL152W, YIL122W, YLR286C, YLR287C-A, YML123C, YNL089C, YOR265W, YAR015W, YDL070W, YJL063C, YLR038C, YLR439W, YOR389W, YPR124W, YER124C, YER154W, YGR285C, YJR025C, YJR148W, YAL012W, YAL014C, YBR196C, YER001W, YLR034C, YLR438W, YMR171C, YNL220W, YOR390W, YPL060C-A, YPR119W, YBR070C, YDL041W, YFL022C, YJL026W, YIR009W, YLR380W, YOL086C, YBR265W, YGR254W, YHR215W, YJL153C, YKL178C, YLR130C, YLR132C, YPL092W, YFL014W, YJR156C, YLL010C, YLR343W, YOR298C-A, YPR027C, YAR071W, YBL032W, YCL027W, YKL177W, YLR133W, YMR323W, YDR086C, YDR452W, YGL252C, YHL032C, YIL162W, YOL058W, YOR239W, YOR243C, YPL189W, YPL252C, YBR177C, YBR241C, YLR040C, YLR420W, YNL259C, YOR393W, YBL098W, YCL066W, YHR005C-A, YKR086W, YNL066W, YOR210W, YPL251W, YEL059C-A, YGL028C, YGR137W, YKL120W, YLR041W, YOR084W, YBL063W, YCR097W, YDL052C, YFL026W, YHR071W, YHR072W-A, YKL032C, YLR322W, YMR120C, YOL122C, YOL126C, YDR322C-A, YER095W, YER070W, YGL089C, YIL066C, YMR300C, YDR174W, YDR481C, YFL023W, YFR020W, YIR016W, YLR383W, YLR355C, YPL281C, YPR035W, YER040W, YJL196C, YJR004C, YKL216W, YLR139C, YNR044W, YDR056C, YDR460W, YHL036W, YHR018C, YHL009W-A, YLR299W, YLR303W, YMR006C, YOR247W, YAL062W, YAR053W, YDR274C, YHR200W, YKL103C, YLR050C, YOR063W, YDR027C, YGL253W, YJR103W, YLR267W, YLR302C, YNL104C, YPL198W, YGL032C, YHR135C, YHR203C, YKL069W, YLR328W, YMR126C, YPR012W, YOR034C, YCL009C, YGR204W, YGR274C, YIL074C, YJR009C, YKL164C, YLR148W, YLR150W, YLR180W, YMR276W, YNL012W, YMR310C, YNL327W, YNR055C, YOR121C, YPL104W, YPR201W, YJL207C, YDL055C, YDR119W, YDR151C, YFL062W, YGR086C, YHR108W, YKL004W, YLR359W, YLR390W-A, YMR094W, YMR155W, YMR158W, YOL097C, YOL163W, YPR069C, YPR041W, YIL043C, YKL163W, YNL007C
Genes supported by both experiments 6 genes
YCL065W, YCL066W, YCR040W, YFR007W, YNL259C, YPR035W
Predicted TF–TF partners 1 genes
DAL80