← All factors / TF RECORD
GAT4
YIR013C
Protein containing GATA family zinc finger motifs
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content11.27
Max PWM score11.18
Recommended cutoff8.38
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.02 0.84 0.02 0.91 0.07 0.01 0.01 0.82 0.12 0.37 0.19 C | 0.13 0.01 0.01 0.01 0.01 0.96 0.14 0.03 0.30 0.10 0.56 G | 0.03 0.14 0.96 0.01 0.01 0.01 0.01 0.13 0.09 0.11 0.10 T | 0.82 0.01 0.01 0.07 0.91 0.02 0.84 0.02 0.48 0.42 0.15
Position count matrix (PCM)
A | 2 84 2 91 7 1 1 82 12 37 19 C | 13 1 1 1 1 96 14 3 30 10 56 G | 3 14 96 1 1 1 1 13 9 11 10 T | 82 1 1 7 91 2 84 2 48 42 15
Position weight matrix (PWM)
A | -2.77 0.97 -2.77 1.05 -1.52 -3.47 -3.47 0.94 -0.98 0.15 -0.52 C | -0.33 -2.89 -2.89 -2.89 -2.89 1.67 -0.25 -1.79 0.51 -0.59 1.13 G | -1.79 -0.25 1.67 -2.89 -2.89 -2.89 -2.89 -0.33 -0.69 -0.49 -0.59 T | 0.94 -3.47 -3.47 -1.52 1.05 -2.77 0.97 -2.77 0.41 0.27 -0.76
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
GAT4Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content8.465
Max PWM score7.16
Recommended cutoff5.37
Position frequency matrix (PFM)
A | 0.80 0.03 0.96 0.01 0.01 0.05 C | 0.04 0.01 0.01 0.01 0.97 0.28 G | 0.12 0.95 0.01 0.01 0.01 0.03 T | 0.04 0.01 0.02 0.97 0.01 0.64
Position count matrix (PCM)
A | 80 3 96 1 1 5 C | 4 1 1 1 97 28 G | 12 95 1 1 1 3 T | 4 1 2 97 1 64
Position weight matrix (PWM)
A | 0.92 -2.37 1.10 -3.47 -3.47 -1.86 C | -1.50 -2.89 -2.89 -2.89 1.68 0.44 G | -0.41 1.66 -2.89 -2.89 -2.89 -1.79 T | -2.08 -3.47 -2.77 1.11 -3.47 0.69
GAT4Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content0.7755
Max PWM score3.65
Recommended cutoff2.74
Position frequency matrix (PFM)
A | 0.185 0.261 0.230 0.297 0.437 0.320 0.245 0.251 C | 0.291 0.297 0.230 0.274 0.136 0.190 0.282 0.246 G | 0.263 0.187 0.347 0.312 0.213 0.265 0.205 0.227 T | 0.261 0.255 0.192 0.117 0.215 0.225 0.268 0.277
Position count matrix (PCM)
A | 18 26 23 29 43 32 24 25 C | 29 29 23 27 13 19 28 24 G | 26 18 34 31 21 26 20 22 T | 26 25 19 11 21 22 26 27
Position weight matrix (PWM)
A | -0.55 -0.20 -0.33 -0.07 0.31 0.00 -0.27 -0.24 C | 0.48 0.50 0.25 0.42 -0.28 0.05 0.45 0.31 G | 0.38 0.04 0.66 0.55 0.17 0.39 0.13 0.23 T | -0.20 -0.23 -0.51 -1.01 -0.40 -0.35 -0.18 -0.14
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data