← All factors / TF RECORD

GAL4

YPL248C, GAL81

View at SGD ↗

DNA-binding transcription factor required for the activation of the GAL genes in response to galactose; repressed by Gal80p and activated by Gal3p

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Macisaac et. al
Fisher’s P-value3.47e-27
Information content19.11
Max PWM score19.66
Recommended cutoff13.01
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.001 0.001 0.056 0.642 0.185 0.199 0.574 0.142 0.640 0.116 0.058 0.060 0.030 0.186 0.001 0.001 0.001 0.572 
C | 0.941 0.015 0.044 0.126 0.427 0.142 0.071 0.569 0.001 0.367 0.196 0.181 0.670 0.426 0.983 0.997 0.001 0.095 
G | 0.001 0.983 0.885 0.101 0.373 0.186 0.299 0.218 0.015 0.316 0.001 0.472 0.210 0.187 0.015 0.001 0.956 0.178 
T | 0.057 0.001 0.015 0.131 0.015 0.472 0.056 0.071 0.344 0.201 0.746 0.287 0.090 0.201 0.001 0.001 0.042 0.155 
Position count matrix (PCM)
A |   0   0   5  64  18  19  57  14  64  11   5   6   3  18   0   0   0  57 
C |  94   1   4  12  42  14   7  56   0  36  19  18  67  42  98  99   0   9 
G |   0  98  88  10  37  18  29  21   1  31   0  47  21  18   1   0  95  17 
T |   5   0   1  13   1  47   5   7  34  20  74  28   9  20   0   0   4  15 
Position weight matrix (PWM)
A | -5.77 -5.77 -1.74  0.70 -0.55 -0.48  0.58 -0.81  0.69 -1.01 -1.71 -1.67 -2.37 -0.54 -5.77 -5.77 -5.77  0.58 
C |  1.65 -2.48 -1.41 -0.36  0.86 -0.24 -0.93  1.15 -5.19  0.71  0.09  0.01  1.31  0.86  1.70  1.71 -5.19 -0.64 
G | -5.19  1.70  1.59 -0.58  0.73  0.03  0.51  0.19 -2.48  0.56 -5.19  0.96  0.15  0.04 -2.48 -5.19  1.67 -0.01 
T | -1.73 -5.77 -3.06 -0.89 -3.06  0.39 -1.74 -1.51  0.07 -0.47  0.85 -0.11 -1.27 -0.47 -5.77 -5.77 -2.03 -0.72 
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 12

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

GAL4_AFoat et. al.P = 1.75e-05View matrix ↘
Sequence logo for GAL4_A
Fisher’s P-value1.75e-05
Information content22.25
Max PWM score24.25
Recommended cutoff12.29
Position frequency matrix (PFM)
A | 0.09 0.40 0.29 0.02 0.01 0.01 0.67 0.15 0.47 0.50 0.03 0.43 0.12 0.03 0.42 0.14 0.01 0.15 0.01 0.01 0.93 0.12 0.06 
C | 0.57 0.15 0.35 0.94 0.04 0.01 0.01 0.48 0.02 0.15 0.25 0.05 0.40 0.02 0.57 0.41 0.65 0.76 0.86 0.01 0.01 0.20 0.75 
G | 0.24 0.31 0.12 0.01 0.94 0.97 0.17 0.37 0.08 0.21 0.67 0.04 0.25 0.01 0.01 0.23 0.06 0.01 0.01 0.97 0.05 0.25 0.19 
T | 0.10 0.13 0.24 0.03 0.01 0.01 0.15 0.01 0.43 0.14 0.06 0.49 0.23 0.93 0.01 0.22 0.28 0.08 0.13 0.01 0.01 0.43 0.01 
Position count matrix (PCM)
A |   9  40  28   2   1   1  67  15  47  50   3  43  12   3  42  14   1  15   1   1  93  12   6 
C |  56  15  35  94   4   1   1  48   2  15  25   5  40   2  56  41  65  76  86   1   1  20  75 
G |  24  31  12   1  94  97  17  37   8  21  67   4  25   1   1  23   6   1   1  97   5  25  19 
T |  10  13  24   3   1   1  15   1  43  14   6  49  23  93   1  22  28   8  13   1   1  43   1 
Position weight matrix (PWM)
A | -1.27  0.22 -0.10 -2.77 -3.47 -3.47  0.74 -0.76  0.38  0.45 -2.37  0.30 -0.98 -2.37  0.27 -0.83 -3.47 -0.76 -3.47 -3.47  1.07 -0.98 -1.67 
C |  1.15 -0.18  0.66  1.65 -1.50 -2.89 -2.89  0.98 -2.20 -0.18  0.33 -1.28  0.80 -2.20  1.15  0.82  1.28  1.44  1.56 -2.89 -2.89  0.11  1.43 
G |  0.29  0.54 -0.41 -2.89  1.65  1.68 -0.06  0.72 -0.81  0.15  1.31 -1.50  0.33 -2.89 -2.89  0.25 -1.10 -2.89 -2.89  1.68 -1.28  0.33  0.05 
T | -1.16 -0.90 -0.29 -2.37 -3.47 -3.47 -0.76 -3.47  0.30 -0.83 -1.67  0.43 -0.33  1.07 -3.47 -0.37 -0.13 -1.39 -0.90 -3.47 -3.47  0.30 -3.47 
GAL4_BFoat et. al.P = 1View matrix ↘
Sequence logo for GAL4_B
Fisher’s P-value1
Information content13.89
Max PWM score19.52
Recommended cutoff14.64
Position frequency matrix (PFM)
A | 0.01 0.20 0.04 0.21 0.50 0.19 0.32 0.13 0.40 0.47 0.18 0.01 0.46 0.11 0.36 0.21 0.58 0.02 0.01 0.12 0.16 0.53 0.29 0.27 0.11 
C | 0.35 0.64 0.84 0.01 0.01 0.31 0.02 0.26 0.07 0.07 0.14 0.57 0.17 0.19 0.29 0.29 0.08 0.03 0.57 0.01 0.08 0.22 0.19 0.23 0.51 
G | 0.34 0.01 0.01 0.05 0.02 0.28 0.30 0.24 0.53 0.05 0.52 0.39 0.10 0.27 0.24 0.21 0.18 0.68 0.21 0.01 0.76 0.25 0.05 0.31 0.37 
T | 0.31 0.16 0.11 0.73 0.47 0.21 0.36 0.37 0.01 0.42 0.16 0.03 0.27 0.43 0.11 0.28 0.16 0.28 0.21 0.86 0.01 0.01 0.47 0.19 0.01 
Position count matrix (PCM)
A |   1  20   4  21  50  19  32  13  40  47  18   1  46  11  36  21  57   2   1  12  16  53  28  27  11 
C |  35  64  84   1   1  31   2  26   7   7  14  56  17  19  28  28   8   3  56   1   8  22  19  23  51 
G |  34   1   1   5   2  28  30  24  53   5  52  39  10  27  24  21  18  68  21   1  76  25   5  31  37 
T |  31  16  11  73  47  21  36  37   1  42  16   3  27  43  11  28  16  28  21  86   1   1  47  19   1 
Position weight matrix (PWM)
A | -3.47 -0.47 -2.08 -0.42  0.45 -0.52  0.00 -0.90  0.22  0.38 -0.58 -3.47  0.36 -1.07  0.12 -0.42  0.59 -2.77 -3.47 -0.98 -0.69  0.50 -0.10 -0.17 -1.07 
C |  0.66  1.27  1.54 -2.89 -2.89  0.54 -2.20  0.37 -0.94 -0.94 -0.25  1.15 -0.06  0.05  0.48  0.48 -0.81 -1.79  1.15 -2.89 -0.81  0.20  0.05  0.25  1.04 
G |  0.64 -2.89 -2.89 -1.28 -2.20  0.44  0.51  0.29  1.08 -1.28  1.06  0.77 -0.59  0.41  0.29  0.15  0.00  1.33  0.15 -2.89  1.44  0.33 -1.28  0.54  0.72 
T | -0.03 -0.69 -1.07  0.82  0.38 -0.42  0.12  0.15 -3.47  0.27 -0.69 -2.37 -0.17  0.30 -1.07 -0.13 -0.69 -0.13 -0.42  0.99 -3.47 -3.47  0.38 -0.52 -3.47 
GAL4_CFoat et. al.P = 0.006809View matrix ↘
Sequence logo for GAL4_C
Fisher’s P-value0.006809
Information content15.03
Max PWM score15.88
Recommended cutoff8.08
Position frequency matrix (PFM)
A | 0.46 0.01 0.45 0.07 0.97 0.01 0.06 0.51 0.44 0.01 0.52 0.02 0.06 0.27 0.47 
C | 0.45 0.65 0.26 0.78 0.01 0.80 0.92 0.21 0.37 0.80 0.01 0.94 0.01 0.44 0.01 
G | 0.04 0.01 0.01 0.14 0.01 0.18 0.01 0.01 0.01 0.19 0.01 0.03 0.53 0.01 0.41 
T | 0.05 0.34 0.28 0.01 0.01 0.01 0.01 0.28 0.19 0.01 0.47 0.01 0.41 0.29 0.11 
Position count matrix (PCM)
A |  46   1  45   7  97   1   6  51  44   1  52   2   6  27  47 
C |  45  65  26  78   1  80  92  21  37  80   1  94   1  44   1 
G |   4   1   1  14   1  18   1   1   1  19   1   3  53   1  41 
T |   5  34  28   1   1   1   1  28  19   1  47   1  41  28  11 
Position weight matrix (PWM)
A |  0.36 -3.47  0.34 -1.52  1.11 -3.47 -1.67  0.47  0.32 -3.47  0.49 -2.77 -1.67 -0.17  0.38 
C |  0.92  1.28  0.37  1.47 -2.89  1.49  1.63  0.15  0.72  1.49 -2.89  1.65 -2.89  0.89 -2.89 
G | -1.50 -2.89 -2.89 -0.25 -2.89  0.00 -2.89 -2.89 -2.89  0.05 -2.89 -1.79  1.08 -2.89  0.82 
T | -1.86  0.06 -0.13 -3.47 -3.47 -3.47 -3.47 -0.13 -0.52 -3.47  0.38 -3.47  0.25 -0.10 -1.07 
GAL4_DFoat et. al.P = 4.74e-06View matrix ↘
Sequence logo for GAL4_D
Fisher’s P-value4.74e-06
Information content17.97
Max PWM score16.77
Recommended cutoff9.39
Position frequency matrix (PFM)
A | 0.60 0.04 0.36 0.01 0.94 0.01 0.09 0.40 0.49 0.01 0.39 0.01 0.26 0.01 0.07 
C | 0.01 0.93 0.40 0.97 0.01 0.97 0.43 0.07 0.02 0.81 0.55 0.97 0.01 0.01 0.47 
G | 0.01 0.02 0.01 0.01 0.04 0.01 0.30 0.19 0.01 0.17 0.06 0.01 0.71 0.01 0.45 
T | 0.38 0.01 0.23 0.01 0.01 0.01 0.19 0.34 0.48 0.01 0.01 0.01 0.03 0.97 0.01 
Position count matrix (PCM)
A |  60   4  36   1  94   1   9  40  49   1  39   1  26   1   7 
C |   1  93  40  97   1  97  43   7   2  81  55  97   1   1  47 
G |   1   2   1   1   4   1  30  19   1  17   6   1  71   1  45 
T |  38   1  23   1   1   1  19  34  48   1   1   1   3  97   1 
Position weight matrix (PWM)
A |  0.63 -2.08  0.12 -3.47  1.08 -3.47 -1.27  0.22  0.43 -3.47  0.20 -3.47 -0.21 -3.47 -1.52 
C | -2.89  1.64  0.80  1.68 -2.89  1.68  0.87 -0.94 -2.20  1.50  1.12  1.68 -2.89 -2.89  0.96 
G | -2.89 -2.20 -2.89 -2.89 -1.50 -2.89  0.51  0.05 -2.89 -0.06 -1.10 -2.89  1.37 -2.89  0.92 
T |  0.17 -3.47 -0.33 -3.47 -3.47 -3.47 -0.52  0.06  0.41 -3.47 -3.47 -3.47 -2.37  1.11 -3.47 
GAL4_EFoat et. al.P = 0.0002873View matrix ↘
Sequence logo for GAL4_E
Fisher’s P-value0.0002873
Information content13.31
Max PWM score14.78
Recommended cutoff10.71
Position frequency matrix (PFM)
A | 0.39 0.01 0.21 0.01 0.92 0.01 0.24 0.01 0.33 0.11 0.63 0.05 0.36 
C | 0.01 0.42 0.01 0.75 0.01 0.67 0.48 0.97 0.01 0.64 0.01 0.25 0.58 
G | 0.60 0.03 0.55 0.23 0.06 0.32 0.01 0.01 0.65 0.17 0.05 0.01 0.01 
T | 0.01 0.54 0.23 0.01 0.01 0.01 0.28 0.01 0.01 0.08 0.32 0.68 0.06 
Position count matrix (PCM)
A |  39   1  21   1  92   1  24   1  33  11  63   5  36 
C |   1  42   1  75   1  67  48  97   1  64   1  25  57 
G |  60   3  55  23   6  32   1   1  65  17   5   1   1 
T |   1  54  23   1   1   1  28   1   1   8  32  68   6 
Position weight matrix (PWM)
A |  0.20 -3.47 -0.42 -3.47  1.06 -3.47 -0.29 -3.47  0.03 -1.07  0.68 -1.86  0.12 
C | -2.89  0.85 -2.89  1.43 -2.89  1.31  0.98  1.68 -2.89  1.27 -2.89  0.33  1.17 
G |  1.20 -1.79  1.12  0.25 -1.10  0.58 -2.89 -2.89  1.28 -0.06 -1.28 -2.89 -2.89 
T | -3.47  0.52 -0.33 -3.47 -3.47 -3.47 -0.13 -3.47 -3.47 -1.39  0.00  0.75 -1.67 
GAL4_FFoat et. al.P = 0.0009011View matrix ↘
Sequence logo for GAL4_F
Fisher’s P-value0.0009011
Information content11.47
Max PWM score13.1
Recommended cutoff9.51
Position frequency matrix (PFM)
A | 0.01 0.15 0.48 0.73 0.13 0.70 0.01 0.39 0.01 0.69 0.25 0.09 
C | 0.91 0.58 0.51 0.01 0.71 0.03 0.94 0.01 0.60 0.19 0.71 0.02 
G | 0.01 0.01 0.01 0.04 0.07 0.01 0.01 0.01 0.10 0.01 0.01 0.26 
T | 0.07 0.26 0.01 0.22 0.09 0.27 0.04 0.60 0.29 0.12 0.03 0.63 
Position count matrix (PCM)
A |   1  15  48  73  13  70   1  39   1  69  25   9 
C |  91  57  51   1  71   3  94   1  60  19  71   2 
G |   1   1   1   4   7   1   1   1  10   1   1  26 
T |   7  26   1  22   9  27   4  60  28  12   3  63 
Position weight matrix (PWM)
A | -3.47 -0.76  0.41  0.82 -0.90  0.78 -3.47  0.20 -3.47  0.77 -0.25 -1.27 
C |  1.62  1.17  1.04 -2.89  1.37 -1.79  1.65 -2.89  1.20  0.05  1.37 -2.20 
G | -2.89 -2.89 -2.89 -1.50 -0.94 -2.89 -2.89 -2.89 -0.59 -2.89 -2.89  0.37 
T | -1.52 -0.21 -3.47 -0.37 -1.27 -0.17 -2.08  0.63 -0.10 -0.98 -2.37  0.68 
GAL4Harbison et. al.P = 6.89e-26View matrix ↘
Sequence logo for GAL4
Fisher’s P-value6.89e-26
Information content9.378
Max PWM score12.75
Recommended cutoff10.62
Position frequency matrix (PFM)
A | 0.053 0.053 0.053 0.392 0.264 0.322 0.482 0.353 0.354 0.336 0.242 0.326 0.237 0.275 0.083 0.114 0.080 
C | 0.854 0.030 0.030 0.177 0.236 0.240 0.101 0.220 0.133 0.166 0.215 0.229 0.307 0.139 0.740 0.844 0.065 
G | 0.030 0.864 0.864 0.231 0.257 0.225 0.194 0.267 0.101 0.288 0.193 0.188 0.278 0.170 0.095 0.021 0.775 
T | 0.063 0.053 0.053 0.200 0.243 0.213 0.222 0.160 0.412 0.211 0.350 0.258 0.178 0.417 0.083 0.021 0.080 
Position count matrix (PCM)
A |   5   5   5  39  26  32  48  35  35  33  24  32  23  27   8  11   8 
C |  85   3   3  17  23  24  10  22  13  16  21  22  30  13  74  84   6 
G |   3  86  86  23  25  22  19  26  10  28  19  18  27  17   9   2  77 
T |   6   5   5  20  24  21  22  16  41  21  35  25  17  41   8   2   8 
Position weight matrix (PWM)
A | -1.80 -1.80 -1.80  0.20 -0.19  0.01  0.41  0.10  0.10  0.05 -0.28  0.02 -0.30 -0.15 -1.35 -1.03 -1.39 
C |  1.56 -1.79 -1.79 -0.02  0.27  0.29 -0.58  0.20 -0.30 -0.08  0.18  0.24  0.53 -0.26  1.41  1.55 -1.02 
G | -1.79  1.57  1.57  0.25  0.36  0.22  0.07  0.39 -0.58  0.47  0.07  0.04  0.43 -0.06 -0.64 -2.15  1.46 
T | -1.63 -1.80 -1.80 -0.47 -0.28 -0.41 -0.37 -0.69  0.25 -0.42  0.09 -0.22 -0.59  0.26 -1.35 -2.72 -1.39 
GAL4Morozov et. al.P = 2.64e-19View matrix ↘
Sequence logo for GAL4
Fisher’s P-value2.64e-19
Information content14.06
Max PWM score16.75
Recommended cutoff12.32
Position frequency matrix (PFM)
A | 0.023 0.019 0.015 0.344 0.128 0.238 0.627 0.145 0.866 0.099 0.129 0.212 0.079 0.124 0.066 0.039 0.053 
C | 0.939 0.041 0.189 0.211 0.461 0.286 0.118 0.283 0.041 0.241 0.237 0.350 0.461 0.137 0.803 0.837 0.024 
G | 0.012 0.887 0.770 0.231 0.337 0.327 0.189 0.427 0.090 0.399 0.220 0.291 0.321 0.274 0.081 0.105 0.894 
T | 0.026 0.053 0.025 0.215 0.073 0.149 0.065 0.145 0.003 0.262 0.414 0.146 0.139 0.465 0.050 0.020 0.029 
Position count matrix (PCM)
A |   2   1   1  34  12  23  62  14  86   9  12  21   7  12   6   3   5 
C |  93   4  18  21  46  28  11  28   4  24  23  35  46  13  80  83   2 
G |   1  88  77  23  33  32  18  42   9  39  22  29  32  27   8  10  89 
T |   2   5   2  21   7  14   6  14   0  26  41  14  13  46   5   2   2 
Position weight matrix (PWM)
A | -2.63 -2.82 -3.06  0.07 -0.92 -0.30  0.67 -0.79  1.00 -1.17 -0.91 -0.41 -1.40 -0.95 -1.58 -2.10 -1.80 
C |  1.65 -1.48  0.05  0.16  0.94  0.46 -0.42  0.45 -1.48  0.29  0.28  0.66  0.94 -0.27  1.50  1.54 -2.01 
G | -2.71  1.59  1.45  0.25  0.63  0.60  0.05  0.86 -0.69  0.80  0.20  0.48  0.58  0.42 -0.80 -0.54  1.60 
T | -2.51 -1.80 -2.55 -0.40 -1.48 -0.76 -1.59 -0.79 -4.67 -0.20  0.26 -0.78 -0.83  0.37 -1.86 -2.77 -2.40 
GAL4Pachkov et alP = 1.65e-23View matrix ↘
Sequence logo for GAL4
Fisher’s P-value1.65e-23
Information content18.5
Max PWM score18.32
Recommended cutoff12.49
Position frequency matrix (PFM)
A | 0.001 0.001 0.001 0.253 0.095 0.316 0.786 0.198 0.641 0.206 0.031 0.366 0.001 0.077 0.001 0.001 0.001 
C | 1.000 0.001 0.156 0.213 0.369 0.251 0.001 0.452 0.112 0.185 0.244 0.162 0.481 0.129 1.000 0.940 0.001 
G | 0.001 1.000 0.809 0.301 0.374 0.311 0.181 0.283 0.001 0.545 0.157 0.346 0.244 0.138 0.001 0.060 1.000 
T | 0.001 0.001 0.035 0.233 0.162 0.121 0.033 0.068 0.247 0.064 0.568 0.126 0.276 0.657 0.001 0.001 0.001 
Position count matrix (PCM)
A |   0   0   0  25   9  31  78  19  64  20   3  36   0   7   0   0   0 
C | 100   0  15  21  36  25   0  45  11  18  24  16  48  12 100  94   0 
G |   0 100  80  30  37  31  18  28   0  54  15  34  24  13   0   6 100 
T |   0   0   3  23  16  12   3   6  24   6  56  12  27  65   0   0   0 
Position weight matrix (PWM)
A | -5.77 -5.77 -5.77 -0.23 -1.21 -0.01  0.90 -0.48  0.69 -0.44 -2.33  0.13 -5.77 -1.42 -5.77 -5.77 -5.77 
C |  1.71 -5.19 -0.14  0.17  0.72  0.33 -5.19  0.92 -0.47  0.03  0.30 -0.11  0.98 -0.33  1.71  1.65 -5.19 
G | -5.19  1.71  1.50  0.51  0.73  0.55  0.01  0.45 -5.19  1.11 -0.14  0.65  0.30 -0.27 -5.19 -1.10  1.71 
T | -5.77 -5.77 -2.21 -0.32 -0.68 -0.97 -2.27 -1.55 -0.26 -1.61  0.57 -0.93 -0.15  0.72 -5.77 -5.77 -5.77 
GAL4Zhu J and MQ ZhangP = 5.71e-21View matrix ↘
Sequence logo for GAL4
Fisher’s P-value5.71e-21
Information content11.12
Max PWM score16.58
Recommended cutoff11.2
Position frequency matrix (PFM)
A | 0.07 0.07 0.07 0.36 0.14 0.14 0.57 0.07 0.43 0.14 0.07 0.21 0.07 0.21 0.07 0.07 0.07 
C | 0.79 0.07 0.14 0.21 0.29 0.43 0.07 0.57 0.07 0.36 0.21 0.43 0.43 0.14 0.71 0.79 0.07 
G | 0.07 0.79 0.71 0.36 0.43 0.29 0.21 0.29 0.07 0.29 0.14 0.14 0.36 0.14 0.14 0.07 0.79 
T | 0.07 0.07 0.07 0.07 0.14 0.14 0.14 0.07 0.43 0.21 0.57 0.21 0.14 0.50 0.07 0.07 0.07 
Position count matrix (PCM)
A |   7   7   7  36  14  14  56   7  43  14   7  21   7  21   7   7   7 
C |  79   7  14  21  28  43   7  56   7  36  21  43  43  14  71  79   7 
G |   7  79  71  36  43  28  21  28   7  28  14  14  36  14  14   7  79 
T |   7   7   7   7  14  14  14   7  43  21  56  21  14  50   7   7   7 
Position weight matrix (PWM)
A | -1.52 -1.52 -1.52  0.12 -0.83 -0.83  0.58 -1.52  0.30 -0.83 -1.52 -0.42 -1.52 -0.42 -1.52 -1.52 -1.52 
C |  1.48 -0.94 -0.25  0.15  0.48  0.87 -0.94  1.15 -0.94  0.69  0.15  0.87  0.87 -0.25  1.37  1.48 -0.94 
G | -0.94  1.48  1.37  0.69  0.87  0.48  0.15  0.48 -0.94  0.48 -0.25 -0.25  0.69 -0.25 -0.25 -0.94  1.48 
T | -1.52 -1.52 -1.52 -1.52 -0.83 -0.83 -0.83 -1.52  0.30 -0.42  0.58 -0.42 -0.83  0.45 -1.52 -1.52 -1.52 
GAL4Zhu et. al.P = 2.13e-13View matrix ↘
Sequence logo for GAL4
Fisher’s P-value2.13e-13
Information content16.31
Max PWM score16.33
Recommended cutoff10.54
Position frequency matrix (PFM)
A | 0.01 0.01 0.01 0.01 0.21 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.01 0.01 0.01 0.55 
C | 0.42 0.97 0.02 0.01 0.11 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.97 0.96 0.01 0.01 
G | 0.01 0.01 0.96 0.97 0.64 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.01 0.02 0.97 0.42 
T | 0.55 0.01 0.01 0.01 0.04 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.25 0.01 0.01 0.01 0.01 
Position count matrix (PCM)
A |   1   1   1   1  21  25  25  25  25  25  25  25  25  25  25   1   1   1  55 
C |  42  97   2   1  11  25  25  25  25  25  25  25  25  25  25  97  96   1   1 
G |   1   1  96  97  64  25  25  25  25  25  25  25  25  25  25   1   2  97  42 
T |  55   1   1   1   4  25  25  25  25  25  25  25  25  25  25   1   1   1   1 
Position weight matrix (PWM)
A | -3.47 -3.47 -3.47 -3.47 -0.42 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -3.47 -3.47 -3.47  0.54 
C |  0.85  1.68 -2.20 -2.89 -0.49  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33  1.68  1.67 -2.89 -2.89 
G | -2.89 -2.89  1.67  1.68  1.27  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33  0.33 -2.89 -2.20  1.68  0.85 
T |  0.54 -3.47 -3.47 -3.47 -2.08 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -0.25 -3.47 -3.47 -3.47 -3.47 
GAL4Zhao and StormoP = 0.002085View matrix ↘
Sequence logo for GAL4
Fisher’s P-value0.002085
Information content7.206
Max PWM score6.5
Recommended cutoff6.22
Position frequency matrix (PFM)
A | 0.122 0.145 0.001 0.001 0.001 0.548 
C | 0.394 0.241 0.972 0.797 0.001 0.076 
G | 0.225 0.188 0.001 0.201 0.997 0.300 
T | 0.259 0.426 0.026 0.001 0.001 0.076 
Position count matrix (PCM)
A |  12  14   0   0   0  54 
C |  39  24  97  79   0   7 
G |  22  18   0  20  99  30 
T |  25  42   2   0   0   7 
Position weight matrix (PWM)
A | -0.96 -0.79 -5.77 -5.77 -5.77  0.54 
C |  0.78  0.29  1.69  1.49 -5.19 -0.86 
G |  0.22  0.04 -5.19  0.11  1.71  0.51 
T | -0.21  0.29 -2.51 -5.77 -5.77 -1.44 
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 68 genes

YAL030W, YAL031C, YAL062W, YBL059W, YBL109W, YBL111C, YBL112C, YBL113C, YBR018C, YBR019C, YBR020W, YBR057C, YBR086C, YBR087W, YBR102C, YBR103W, YBR166C, YCR105W, YDL206W, YDL237W, YDL238C, YDR008C, YDR009W, YDR212W, YDR245W, YDR252W, YDR415C, YDR416W, YDR520C, YDR543C, YDR544C, YDR545W, YER189W, YER190W, YFR057W, YGL134W, YGR073C, YGR075C, YGR166W, YGR296W, YHR091C, YIL085C, YIL086C, YIL087C, YJR044C, YLL065W, YLR081W, YLR082C, YLR397C, YLR442C, YLR443W, YML051W, YMR086C-A, YMR087W, YMR135W-A, YMR257C, YMR259C, YNL337W, YNL338W, YNL339C, YOL042W, YOL043C, YOR030W, YOR350C, YPL034W, YPL122C, YPL251W, YPL253C

Genes affected by TF deletion 580 genes

YCR012W, YCR040W, YDR366C, YER178W, YGR280C, YGR282C, YIL148W, YJR020W, YKR012C, YMR010W, YML116W, YMR014W, YMR046W-A, YOR225W, YOR257W, YPL239W, YKL122C, YBR187W, YBR221C, YBR162C, YDL064W, YDL128W, YDL131W, YDR188W, YDR192C, YEL042W, YEL046C, YFR032C-A, YGL009C, YGR121C, YGR124W, YHR143W, YHR174W, YHR115C, YLR025W, YLR056W, YLR027C, YLR058C, YLR060W, YLR062C, YLR432W, YLR406C, YMR194W, YNL239W, YNL209W, YNL211C, YNL277W, YOR002W, YOR067C, YOR008C, YOR071C, YPL015C, YPL049C, YBL083C, YBR001C, YBR031W, YBL087C, YCR013C, YDR034C-A, YDR063W, YDR397C, YER117W, YER146W, YGR275W, YGR279C, YIL113W, YKR042W, YKR013W, YMR011W, YML115C, YMR015C, YNL049C, YNL080C, YOR190W, YOR252W, YOR192C, YOR226C, YPL179W, YCR097W-A, YAL069W, YBR220C, YBR222C, YDL061C, YDR187C, YGL012W, YGR122C-A, YGR155W, YGR096W, YHR112C, YHR142W, YHR143W-A, YHR145C, YJL118W, YLR089C, YLR028C, YLR030W, YLR061W, YMR221C, YMR193C-A, YNL244C, YOR066W, YPL048W, YOR380W, YOR382W, YCR082W, YDR096W, YDR158W, YDR160W, YDR529C, YDR500C, YFR005C, YGR063C, YHR081W, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YLR340W, YLR372W, YLR374C, YMR071C, YNL147W, YNL149C, YOL136C, YOR285W, YOR287C, YOR317W, YOR321W, YOR351C, YPR020W, YPL006W, YPL036W, YPL187W, YAR064W, YAR068W, YBL059W, YBR283C, YBR253W, YCL017C, YER086W, YGL103W, YGL077C, YGR180C, YHR208W, YIL016W, YHR210C, YIL052C, YML023C, YML056C, YML085C, YML029W, YMR312W, YMR286W, YMR256C, YNR026C, YNR030W, YNL307C, YNR032C-A, YPL142C, YPL080C, YHR183W, YBR067C, YDR461W, YFR006W, YGR034W, YGR064W, YHR021C, YJL017W, YJR146W, YJR117W, YKR106W, YLR339C, YMR074C, YNL110C, YNL176C, YNL114C, YNL146W, YNL116W, YOL105C, YOL137W, YOL077W-A, YOL109W, YPR013C, YPL271W, YNL251C, YNL287W, YBL026W, YCL018W, YDL191W, YDR309C, YDR338C, YDR340W, YDR281C, YER052C, YER025W, YER056C, YGL102C, YGR181W, YGR185C, YIL015W, YJL178C, YLR153C, YLR185W, YML024W, YML055W, YML084W, YML026C, YML086C, YNL302C, YPL143W, YPL145C, YCR048W, YDR012W, YDR378C, YIL088C, YIL090W, YJR094W-A, YLR286C, YLR287C-A, YML123C, YNL030W, YOL019W, YOR265W, YPL247C, YDL133C-A, YDL136W, YDR196C, YDR224C, YER002W, YFR044C, YHR123W, YHR188C, YJL121C, YJL093C, YKL053C-A, YLR066W, YLR068W, YLR439W, YMR230W, YNL279W, YNL219C, YNL283C, YOR045W, YBR009C, YCR018C-A, YDR071C, YDR077W, YDR373W, YER154W, YGR285C, YIL153W, YIL123W, YJR057W, YKR048C, YNL055C, YNL057W, YOL020W, YOL052C, YOR260W, YOR234C, YPL184C, YPL248C, YJR148W, YAL010C, YAL012W, YAL042W, YAL043C-A, YAL016W, YBR162W-A, YBR196C, YDL075W, YDR261C, YKL081W, YLR034C, YLR037C, YMR171C, YOR014W, YOR078W, YOR390W, YPL028W, YDR502C, YGR037C, YLL009C, YLR344W, YLR378C, YMR139W, YOL144W, YOL086C, YOR293W, YOR325W, YOR327C, YOR357C, YOR329C, YPR054W, YBL003C, YBR265W, YDL232W, YDR349C, YGR254W, YHR214W, YJL159W, YKL209C, YKL178C, YMR260C, YMR296C, YNR037C, YPL092W, YJL062W, YCR088W, YDR105C, YDR139C, YDR471W, YFL017W-A, YGR036C, YHR032W, YJR121W, YLL010C, YLR343W, YLR379W, YMR079W, YMR081C, YMR112C, YMR083W, YNL150W, YNL152W, YOL143C, YOR324C, YPL279C, YLL023C, YNR043W, YBL028C, YBL030C, YBL032W, YBR262C, YGR189C, YHR214W-A, YHR216W, YIL027C, YJL188C, YJL158C, YJL190C, YKL175W, YKL146W, YKL177W, YLR133W, YMR323W, YER060W, YCR023C, YCR059C, YDR086C, YDR450W, YER131W, YGL189C, YHR010W, YHL032C, YIL162W, YKR057W, YKR093W, YLR262C-A, YLR234W, YLR264W, YMR055C, YNL038W, YOR239W, YPL221W, YPL225W, YPL256C, YIL114C, YBR171W, YDR232W, YDR234W, YEL058W, YHR190W, YLR040C, YLR104W, YLR420W, YNL259C, YOR081C, YOR085W, YPL031C, YPL066W, YPL037C, YDL058W, YCR053W, YDR447C, YGL245W, YHR005C-A, YHL001W, YIL127C, YLR292C, YML126C, YNL094W, YNL066W, YOL030W, YOL061W, YOR210W, YAL022C, YDL081C, YGL056C, YGL028C, YHR189W, YKL057C, YKL120W, YLR041W, YLR043C, YML009C, YMR203W, YMR205C, YMR237W, YNL288W, YOR018W, YOR020C, YOR084W, YPL032C, YPL063W, YBR084C-A, YCR097W, YDR179C, YDR510W, YFL026W, YHR072W-A, YJR159W, YKL003C, YLR354C, YLR388W, YOL092W, YOL122C, YPR062W, YDL208W, YDR322C-A, YDR357C, YER043C, YGL087C, YGL089C, YGR260W, YGR234W, YIL006W, YIL036W, YML070W, YMR272C, YNL321W, YPL162C, YCR090C, YDL045W-A, YDR115W, YFL023W, YIR016W, YJR131W, YLL018C, YLR325C, YMR116C, YMR088C, YNL190W, YNL162W, YOL119C, YOR299W, YPL281C, YPR002C-A, YGR259C, YJR004C, YKL216W, YKL156W, YLR167W, YMR303C, YNR042W, YNR044W, YNL322C, YDR056C, YDR090C, YDR454C, YDR396W, YGL191W, YGL225W, YIL138C, YLR303W, YMR006C, YMR039C, YOR277C, YOR247W, YPL262W, YAL033W, YBR243C, YBR249C, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YJL079C, YML019W, YMR245W, YMR188C, YNL263C, YPL076W, YER012W, YCR028C-A, YGL255W, YHL003C, YHR019C, YIL169C, YJR077C, YKR094C, YLR237W, YLR300W, YLR302C, YNL070W, YNL074C, YNL045W, YOR246C, YOR248W, YAL030W, YBR244W, YDL121C, YGL032C, YGR118W, YJL136C, YKL069W, YLR051C, YLR083C, YLR421C, YMR215W, YNL268W, YBR090C, YDL029W, YFL034C-A, YFL037W, YGR085C, YGR027C, YJR135W-A, YKL006W, YKL008C, YLR328W, YLR394W, YLR332W, YLR334C, YMR158C-B, YOR307C, YOR369C, YPR074C, YPR044C, YBL082C, YCL007C, YCL009C, YDL184C, YIL008W, YKL164C, YKL196C, YLR180W, YLR212C, YML108W, YML052W, YMR305C, YNR055C, YPL170W, YKL004W, YKL006C-A, YLR022C, YLR390W-A, YLR331C, YLR333C, YOL127W, YOL159C, YOL103W, YOR306C, YPR043W, YBL018C, YDR365C, YER048W-A, YGR209C, YKL160W, YKL163W, YLR147C, YLR177W, YML077W, YML081C-A, YMR307W, YOR182C, YPL139C

Genes supported by both experiments 2 genes

YAL030W, YBL059W