← All factors / TF RECORD
FHL1
YPR104C, SPP42
Regulator of ribosomal protein transcription; has forkhead associated domain that binds phosphorylated proteins; also has forkhead DNA-binding domain but does not bind DNA in vitro; suppresses RNA pol III and splicing factor prp4 mutants
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-value2.44e-10
Information content10.96
Max PWM score9.8
Recommended cutoff4.92
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.05 0.92 0.01 0.01 0.01 0.90 0.65 0.51 C | 0.10 0.01 0.97 0.01 0.97 0.01 0.21 0.09 G | 0.84 0.02 0.01 0.93 0.01 0.07 0.05 0.04 T | 0.02 0.04 0.01 0.05 0.01 0.02 0.09 0.37
Position count matrix (PCM)
A | 5 92 1 1 1 90 65 51 C | 10 1 97 1 97 1 21 9 G | 84 2 1 93 1 7 5 4 T | 2 4 1 5 1 2 9 37
Position weight matrix (PWM)
A | -1.86 1.06 -3.47 -3.47 -3.47 1.03 0.71 0.47 C | -0.59 -2.89 1.68 -2.89 1.68 -2.89 0.15 -0.69 G | 1.54 -2.20 -2.89 1.64 -2.89 -0.94 -1.28 -1.50 T | -2.77 -2.08 -3.47 -1.86 -3.47 -2.77 -1.27 0.15
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 10
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
FHL1Badis et. al.P = 6.29e-11View matrix ↘
Fisher’s P-value6.29e-11
Information content10.93
Max PWM score8.75
Recommended cutoff4.75
Position frequency matrix (PFM)
A | 0.01 0.97 0.01 0.01 0.01 0.88 C | 0.10 0.01 0.97 0.01 0.97 0.01 G | 0.88 0.01 0.01 0.97 0.01 0.01 T | 0.01 0.01 0.01 0.01 0.01 0.10
Position count matrix (PCM)
A | 1 97 1 1 1 88 C | 10 1 97 1 97 1 G | 88 1 1 97 1 1 T | 1 1 1 1 1 10
Position weight matrix (PWM)
A | -3.47 1.11 -3.47 -3.47 -3.47 1.01 C | -0.59 -2.89 1.68 -2.89 1.68 -2.89 G | 1.59 -2.89 -2.89 1.68 -2.89 -2.89 T | -3.47 -3.47 -3.47 -3.47 -3.47 -1.16
FHL1_AFoat et. al.P = 1.13e-84View matrix ↘
Fisher’s P-value1.13e-84
Information content11.85
Max PWM score12.76
Recommended cutoff8.57
Position frequency matrix (PFM)
A | 0.34 0.47 0.37 0.01 0.01 0.21 0.45 0.05 0.05 0.01 0.44 0.04 0.01 C | 0.03 0.20 0.01 0.05 0.01 0.43 0.16 0.38 0.01 0.01 0.01 0.27 0.13 G | 0.43 0.11 0.45 0.26 0.96 0.01 0.01 0.01 0.93 0.97 0.55 0.01 0.50 T | 0.21 0.23 0.18 0.68 0.02 0.36 0.38 0.57 0.01 0.01 0.01 0.68 0.37
Position count matrix (PCM)
A | 34 47 37 1 1 21 45 5 5 1 44 4 1 C | 3 20 1 5 1 43 16 38 1 1 1 27 13 G | 43 11 45 26 96 1 1 1 93 97 55 1 50 T | 21 23 18 68 2 36 38 56 1 1 1 68 37
Position weight matrix (PWM)
A | 0.06 0.38 0.15 -3.47 -3.47 -0.42 0.34 -1.86 -1.86 -3.47 0.32 -2.08 -3.47 C | -1.79 0.11 -2.89 -1.28 -2.89 0.87 -0.12 0.75 -2.89 -2.89 -2.89 0.41 -0.33 G | 0.87 -0.49 0.92 0.37 1.67 -2.89 -2.89 -2.89 1.64 1.68 1.12 -2.89 1.02 T | -0.42 -0.33 -0.58 0.75 -2.77 0.12 0.17 0.58 -3.47 -3.47 -3.47 0.75 0.15
FHL1_BFoat et. al.P = 0.463View matrix ↘
Fisher’s P-value0.463
Information content21.2
Max PWM score24.84
Recommended cutoff13
Position frequency matrix (PFM)
A | 0.06 0.13 0.40 0.01 0.01 0.01 0.38 0.10 0.33 0.28 0.58 0.12 0.72 0.32 0.07 0.23 0.68 0.19 0.16 0.15 0.01 0.01 0.01 0.25 0.03 0.59 C | 0.55 0.38 0.16 0.01 0.96 0.01 0.02 0.77 0.25 0.25 0.14 0.33 0.11 0.09 0.14 0.21 0.24 0.20 0.41 0.15 0.01 0.91 0.01 0.05 0.14 0.17 G | 0.30 0.09 0.11 0.97 0.02 0.97 0.07 0.06 0.38 0.21 0.18 0.35 0.14 0.36 0.34 0.37 0.08 0.60 0.11 0.02 0.97 0.03 0.97 0.23 0.54 0.12 T | 0.10 0.40 0.33 0.01 0.01 0.01 0.52 0.07 0.04 0.26 0.10 0.19 0.03 0.23 0.45 0.18 0.01 0.01 0.31 0.68 0.01 0.04 0.01 0.47 0.29 0.11
Position count matrix (PCM)
A | 6 13 40 1 1 1 38 10 33 28 57 12 72 32 7 23 68 19 16 15 1 1 1 25 3 59 C | 55 38 16 1 96 1 2 77 25 25 14 33 11 9 14 21 24 20 41 15 1 91 1 5 14 17 G | 30 9 11 97 2 97 7 6 38 21 18 35 14 36 34 37 8 60 11 2 97 3 97 23 54 12 T | 10 40 33 1 1 1 52 7 4 26 10 19 3 23 45 18 1 1 31 68 1 4 1 47 28 11
Position weight matrix (PWM)
A | -1.67 -0.90 0.22 -3.47 -3.47 -3.47 0.17 -1.16 0.03 -0.13 0.59 -0.98 0.81 0.00 -1.52 -0.33 0.75 -0.52 -0.69 -0.76 -3.47 -3.47 -3.47 -0.25 -2.37 0.61 C | 1.12 0.75 -0.12 -2.89 1.67 -2.89 -2.20 1.45 0.33 0.33 -0.25 0.61 -0.49 -0.69 -0.25 0.15 0.29 0.11 0.82 -0.18 -2.89 1.62 -2.89 -1.28 -0.25 -0.06 G | 0.51 -0.69 -0.49 1.68 -2.20 1.68 -0.94 -1.10 0.75 0.15 0.00 0.66 -0.25 0.69 0.64 0.72 -0.81 1.20 -0.49 -2.20 1.68 -1.79 1.68 0.25 1.10 -0.41 T | -1.16 0.22 0.03 -3.47 -3.47 -3.47 0.49 -1.52 -2.08 -0.21 -1.16 -0.52 -2.37 -0.33 0.34 -0.58 -3.47 -3.47 -0.03 0.75 -3.47 -2.08 -3.47 0.38 -0.10 -1.07
FHL1_CFoat et. al.P = 0.5224View matrix ↘
Fisher’s P-value0.5224
Information content22.15
Max PWM score25.02
Recommended cutoff13.96
Position frequency matrix (PFM)
A | 0.04 0.01 0.01 0.07 0.26 0.27 0.10 0.34 0.30 0.50 0.24 0.05 0.12 0.02 0.04 0.20 0.01 0.01 0.01 0.07 0.10 0.04 C | 0.50 0.97 0.96 0.01 0.24 0.01 0.03 0.09 0.35 0.01 0.07 0.38 0.21 0.88 0.52 0.53 0.74 0.02 0.97 0.05 0.27 0.18 G | 0.24 0.01 0.01 0.91 0.35 0.35 0.44 0.55 0.26 0.33 0.57 0.39 0.44 0.06 0.06 0.22 0.25 0.96 0.01 0.64 0.26 0.77 T | 0.21 0.01 0.02 0.01 0.15 0.37 0.43 0.02 0.08 0.16 0.11 0.18 0.23 0.05 0.39 0.04 0.01 0.01 0.01 0.24 0.36 0.01
Position count matrix (PCM)
A | 4 1 1 7 26 27 10 34 30 50 24 5 12 2 4 20 1 1 1 7 10 4 C | 50 97 96 1 24 1 3 9 35 1 7 38 21 88 52 53 74 2 97 5 27 18 G | 24 1 1 91 35 35 44 55 26 33 56 39 44 6 6 22 25 96 1 64 26 77 T | 21 1 2 1 15 37 43 2 8 16 11 18 23 5 39 4 1 1 1 24 36 1
Position weight matrix (PWM)
A | -2.08 -3.47 -3.47 -1.52 -0.21 -0.17 -1.16 0.06 -0.06 0.45 -0.29 -1.86 -0.98 -2.77 -2.08 -0.47 -3.47 -3.47 -3.47 -1.52 -1.16 -2.08 C | 1.02 1.68 1.67 -2.89 0.29 -2.89 -1.79 -0.69 0.66 -2.89 -0.94 0.75 0.15 1.59 1.06 1.08 1.41 -2.20 1.68 -1.28 0.41 0.00 G | 0.29 -2.89 -2.89 1.62 0.66 0.66 0.89 1.12 0.37 0.61 1.15 0.77 0.89 -1.10 -1.10 0.20 0.33 1.67 -2.89 1.27 0.37 1.45 T | -0.42 -3.47 -2.77 -3.47 -0.76 0.15 0.30 -2.77 -1.39 -0.69 -1.07 -0.58 -0.33 -1.86 0.20 -2.08 -3.47 -3.47 -3.47 -0.29 0.12 -3.47
FHL1_DFoat et. al.P = 1.69e-41View matrix ↘
Fisher’s P-value1.69e-41
Information content18.3
Max PWM score16.48
Recommended cutoff9.41
Position frequency matrix (PFM)
A | 0.37 0.44 0.01 0.01 0.01 0.03 0.01 0.50 0.01 0.93 0.01 0.08 0.01 C | 0.59 0.44 0.01 0.97 0.97 0.01 0.05 0.01 0.97 0.06 0.02 0.84 0.34 G | 0.04 0.12 0.01 0.01 0.01 0.95 0.62 0.49 0.01 0.01 0.01 0.01 0.24 T | 0.01 0.01 0.97 0.01 0.01 0.01 0.32 0.01 0.01 0.01 0.96 0.07 0.42
Position count matrix (PCM)
A | 37 44 1 1 1 3 1 50 1 93 1 8 1 C | 59 44 1 97 97 1 5 1 97 6 2 84 34 G | 4 12 1 1 1 95 62 49 1 1 1 1 24 T | 1 1 97 1 1 1 32 1 1 1 96 7 42
Position weight matrix (PWM)
A | 0.15 0.32 -3.47 -3.47 -3.47 -2.37 -3.47 0.45 -3.47 1.07 -3.47 -1.39 -3.47 C | 1.19 0.89 -2.89 1.68 1.68 -2.89 -1.28 -2.89 1.68 -1.10 -2.20 1.54 0.64 G | -1.50 -0.41 -2.89 -2.89 -2.89 1.66 1.24 1.00 -2.89 -2.89 -2.89 -2.89 0.29 T | -3.47 -3.47 1.11 -3.47 -3.47 -3.47 0.00 -3.47 -3.47 -3.47 1.10 -1.52 0.27
FHL1Harbison et. al.P = 1.25e-110View matrix ↘
Fisher’s P-value1.25e-110
Information content11.85
Max PWM score12.45
Recommended cutoff8.63
Position frequency matrix (PFM)
A | 0.570 0.052 0.022 0.016 0.773 0.041 0.068 0.006 0.496 0.069 0.115 C | 0.085 0.032 0.009 0.123 0.045 0.527 0.009 0.003 0.023 0.047 0.085 G | 0.195 0.064 0.948 0.023 0.067 0.008 0.902 0.984 0.446 0.065 0.577 T | 0.150 0.852 0.021 0.839 0.115 0.424 0.021 0.007 0.034 0.819 0.223
Position count matrix (PCM)
A | 56 5 2 1 77 4 6 0 49 6 11 C | 8 3 0 12 4 52 0 0 2 4 8 G | 19 6 94 2 6 0 90 98 44 6 57 T | 15 85 2 83 11 42 2 0 3 81 22
Position weight matrix (PWM)
A | 0.58 -1.82 -2.68 -3.00 0.88 -2.05 -1.55 -3.98 0.44 -1.53 -1.02 C | -0.75 -1.73 -3.00 -0.38 -1.39 1.07 -3.00 -4.09 -2.06 -1.34 -0.75 G | 0.08 -1.03 1.66 -2.06 -0.99 -3.11 1.61 1.70 0.91 -1.02 1.16 T | -0.76 0.98 -2.72 0.96 -1.02 0.28 -2.72 -3.82 -2.24 0.94 -0.36
FHL1Macisaac et. alP = 4.55e-95View matrix ↘
Fisher’s P-value4.55e-95
Information content11.94
Max PWM score11.57
Recommended cutoff7.42
Position frequency matrix (PFM)
A | 0.702 0.009 0.009 0.005 0.828 0.056 0.157 0.011 0.578 0.046 C | 0.032 0.005 0.005 0.111 0.051 0.706 0.014 0.005 0.059 0.042 G | 0.191 0.090 0.976 0.042 0.048 0.009 0.795 0.965 0.336 0.060 T | 0.075 0.896 0.010 0.842 0.073 0.229 0.034 0.019 0.027 0.852
Position count matrix (PCM)
A | 70 0 0 0 82 5 15 1 57 4 C | 3 0 0 11 5 70 1 0 5 4 G | 19 9 97 4 4 0 79 96 33 6 T | 7 89 1 84 7 22 3 1 2 85
Position weight matrix (PWM)
A | 0.79 -3.57 -3.57 -4.16 0.95 -1.74 -0.71 -3.37 0.59 -1.94 C | -1.73 -3.58 -3.58 -0.48 -1.26 1.37 -2.55 -3.58 -1.12 -1.46 G | 0.06 -0.69 1.69 -1.46 -1.32 -3.00 1.49 1.68 0.62 -1.10 T | -1.45 1.03 -3.47 0.97 -1.48 -0.33 -2.24 -2.82 -2.47 0.98
FHL1Morozov et. al.P = 3.34e-127View matrix ↘
Fisher’s P-value3.34e-127
Information content14.28
Max PWM score14.17
Recommended cutoff9.38
Position frequency matrix (PFM)
A | 0.249 0.320 0.651 0.251 0.978 0.061 0.016 0.109 0.443 0.059 0.927 0.007 0.959 C | 0.118 0.088 0.046 0.697 0.016 0.447 0.960 0.810 0.009 0.048 0.003 0.984 0.031 G | 0.103 0.059 0.146 0.041 0.002 0.017 0.016 0.012 0.519 0.040 0.068 0.002 0.008 T | 0.530 0.533 0.157 0.010 0.003 0.475 0.008 0.069 0.029 0.852 0.002 0.007 0.002
Position count matrix (PCM)
A | 24 32 65 25 97 6 1 10 44 5 92 0 95 C | 11 8 4 69 1 44 96 81 0 4 0 98 3 G | 10 5 14 4 0 1 1 1 51 4 6 0 0 T | 53 53 15 1 0 47 0 6 2 85 0 0 0
Position weight matrix (PWM)
A | -0.25 0.00 0.71 -0.24 1.12 -1.66 -3.00 -1.08 0.33 -1.69 1.06 -3.82 1.10 C | -0.42 -0.72 -1.36 1.35 -2.42 0.91 1.67 1.50 -3.00 -1.32 -4.09 1.70 -1.76 G | -0.56 -1.12 -0.21 -1.48 -4.50 -2.36 -2.42 -2.71 1.06 -1.50 -0.97 -4.50 -3.11 T | 0.50 0.51 -0.71 -3.47 -4.67 0.39 -3.69 -1.53 -2.40 0.98 -5.08 -3.82 -5.08
FHL1Pachkov et alP = 1.73e-10View matrix ↘
Fisher’s P-value1.73e-10
Information content11.32
Max PWM score12.49
Recommended cutoff7.01
Position frequency matrix (PFM)
A | 0.571 0.161 0.409 0.200 0.216 0.226 0.961 0.001 0.014 0.001 0.367 C | 0.156 0.293 0.087 0.306 0.093 0.040 0.001 0.710 0.040 0.611 0.013 G | 0.198 0.547 0.454 0.194 0.691 0.734 0.039 0.001 0.933 0.001 0.620 T | 0.076 0.001 0.049 0.300 0.001 0.001 0.001 0.290 0.013 0.389 0.001
Position count matrix (PCM)
A | 57 16 40 20 21 22 96 0 1 0 36 C | 15 29 8 30 9 4 0 71 4 61 1 G | 19 54 45 19 69 73 3 0 93 0 62 T | 7 0 4 30 0 0 0 28 1 38 0
Position weight matrix (PWM)
A | 0.58 -0.69 0.25 -0.47 -0.39 -0.35 1.10 -5.77 -3.13 -5.77 0.14 C | -0.14 0.49 -0.73 0.53 -0.66 -1.50 -5.19 1.37 -1.50 1.22 -2.63 G | 0.10 1.11 0.93 0.07 1.35 1.41 -1.53 -5.19 1.65 -5.19 1.24 T | -1.44 -5.77 -1.88 -0.06 -5.77 -5.77 -5.77 -0.10 -3.20 0.20 -5.77
FHL1Zhao and StormoP = 1.67e-13View matrix ↘
Fisher’s P-value1.67e-13
Information content5.818
Max PWM score6.81
Recommended cutoff5.73
Position frequency matrix (PFM)
A | 0.196 0.605 0.086 0.061 0.044 0.620 C | 0.246 0.116 0.824 0.001 0.943 0.060 G | 0.440 0.134 0.001 0.758 0.001 0.215 T | 0.119 0.145 0.089 0.180 0.012 0.105
Position count matrix (PCM)
A | 19 60 8 6 4 62 C | 24 11 82 0 94 6 G | 44 13 0 75 0 21 T | 11 14 8 18 1 10
Position weight matrix (PWM)
A | -0.49 0.64 -1.31 -1.66 -1.98 0.66 C | 0.31 -0.44 1.52 -5.19 1.66 -1.10 G | 0.89 -0.30 -5.19 1.44 -5.19 0.18 T | -0.99 -0.79 -1.28 -0.58 -3.28 -1.11
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 207 genes
YAL022C, YBL072C, YBL087C, YBL092W, YBL093C, YBR012W-A, YBR012W-B, YBR084C-A, YBR085W, YBR116C, YBR117C, YBR118W, YBR126C, YBR181C, YBR184W, YBR188C, YBR189W, YBR190W, YBR191W, YDL060W, YDL061C, YDL075W, YDL076C, YDL082W, YDL083C, YDL130W, YDL133W, YDL136W, YDL183C, YDL184C, YDL191W, YDR024W, YDR025W, YDR064W, YDR159W, YDR384C, YDR385W, YDR418W, YDR447C, YDR448W, YDR449C, YDR450W, YDR470C, YDR471W, YDR500C, YDR501W, YEL008W, YEL009C, YEL054C, YER056C-A, YER074W, YER101C, YER102W, YER116C, YER117W, YER130C, YER131W, YFL034W, YFR031C-A, YGL030W, YGL031C, YGL100W, YGL103W, YGL104C, YGL123W, YGL124C, YGL134W, YGL135W, YGL136C, YGL147C, YGL188C, YGL189C, YGR027C, YGR033C, YGR034W, YGR084C, YGR085C, YGR117C, YGR118W, YGR148C, YGR149W, YGR213C, YGR214W, YHL001W, YHL015W, YHL016C, YHL033C, YHR021C, YHR021W-A, YHR141C, YHR142W, YHR203C, YHR204W, YIL018W, YIL069C, YIL133C, YIL148W, YIL149C, YJL134W, YJL135W, YJL136C, YJL177W, YJL178C, YJL189W, YJL190C, YJL191W, YJL192C, YJR123W, YJR145C, YJR146W, YJR147W, YKL006C-A, YKL006W, YKL156W, YKL180W, YKR057W, YKR094C, YKR095W, YLL043W, YLL045C, YLR029C, YLR030W, YLR047C, YLR048W, YLR061W, YLR074C, YLR075W, YLR149C, YLR150W, YLR166C, YLR167W, YLR183C, YLR184W, YLR185W, YLR264W, YLR287C-A, YLR325C, YLR326W, YLR333C, YLR340W, YLR344W, YLR367W, YLR387C, YLR388W, YLR406C, YLR407W, YLR441C, YLR447C, YLR448W, YLR452C, YML024W, YML025C, YML026C, YML063W, YML064C, YML073C, YMR013C, YMR116C, YMR142C, YMR143W, YMR194W, YMR229C, YMR230W, YMR242C, YNL067W, YNL068C, YNL069C, YNL096C, YNL162W, YNL163C, YNL178W, YNL302C, YOL039W, YOL040C, YOL120C, YOL121C, YOL127W, YOL128C, YOR095C, YOR096W, YOR161C, YOR182C, YOR183W, YOR234C, YOR236W, YOR292C, YOR293W, YOR312C, YOR354C, YOR355W, YOR369C, YPL079W, YPL080C, YPL081W, YPL082C, YPL090C, YPL131W, YPL143W, YPL199C, YPL220W, YPR042C, YPR043W, YPR080W, YPR102C, YPR103W, YPR131C, YPR132W
Genes affected by TF deletion 1 genes
No Data
Predicted TF–TF partners 3 genes
AFT2, RAP1, SFP1