S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

DAL82

YNL314W

View at SGD ↗

Positive regulator of allophanate inducible genes; binds a dodecanucleotide sequence upstream of all genes that are induced by allophanate; contains an UISALL DNA-binding, a transcriptional activation, and a coiled-coil domain

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Foat et. al.
Fisher’s P-value1.71e-12
Information content16.37
Max PWM score16.05
Recommended cutoff9.03
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.01 0.05 0.77 0.96 0.92 0.41 0.02 0.01 0.01 0.01 0.01 0.01 0.49 0.05 
C | 0.70 0.25 0.01 0.01 0.06 0.49 0.08 0.30 0.01 0.97 0.01 0.71 0.08 0.29 
G | 0.25 0.68 0.01 0.02 0.01 0.01 0.40 0.33 0.97 0.01 0.96 0.14 0.03 0.53 
T | 0.05 0.01 0.21 0.01 0.01 0.09 0.51 0.35 0.01 0.01 0.02 0.14 0.40 0.13
Position count matrix (PCM)
A |   1   5  77  96  92  41   2   1   1   1   1   1  49   5 
C |  70  25   1   1   6  49   8  30   1  97   1  71   8  28 
G |  25  68   1   2   1   1  40  33  97   1  96  14   3  53 
T |   5   1  21   1   1   9  51  35   1   1   2  14  40  13
Position weight matrix (PWM)
A | -3.47 -1.86  0.88  1.10  1.06  0.25 -2.77 -3.47 -3.47 -3.47 -3.47 -3.47  0.43 -1.86 
C |  1.36  0.33 -2.89 -2.89 -1.10  1.00 -0.81  0.51 -2.89  1.68 -2.89  1.37 -0.81  0.48 
G |  0.33  1.33 -2.89 -2.20 -2.89 -2.89  0.80  0.61  1.68 -2.89  1.67 -0.25 -1.79  1.08 
T | -1.86 -3.47 -0.42 -3.47 -3.47 -1.27  0.47  0.09 -3.47 -3.47 -2.77 -0.83  0.22 -0.90
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 6

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

DAL82Badis et. al.P = 1.00e-05View matrix ↘
Sequence logo for DAL82
Fisher’s P-value1.00e-05
Information content9.433
Max PWM score9.64
Recommended cutoff5.5
Position frequency matrix (PFM)
A | 0.58 0.52 0.39 0.26 0.01 0.01 0.01 0.01 0.11 
C | 0.14 0.11 0.03 0.11 0.25 0.01 0.97 0.01 0.67 
G | 0.14 0.05 0.03 0.42 0.01 0.97 0.01 0.97 0.11 
T | 0.14 0.32 0.55 0.21 0.73 0.01 0.01 0.01 0.11
Position count matrix (PCM)
A |  57  52  39  26   1   1   1   1  11 
C |  14  11   3  11  25   1  97   1  67 
G |  14   5   3  42   1  97   1  97  11 
T |  14  32  55  21  73   1   1   1  11
Position weight matrix (PWM)
A |  0.59  0.49  0.20 -0.21 -3.47 -3.47 -3.47 -3.47 -1.07 
C | -0.25 -0.49 -1.79 -0.49  0.33 -2.89  1.68 -2.89  1.31 
G | -0.25 -1.28 -1.79  0.85 -2.89  1.68 -2.89  1.68 -0.49 
T | -0.83  0.00  0.54 -0.42  0.82 -3.47 -3.47 -3.47 -1.07
Badis et. al.
DAL82_AFoat et. al.P = 6.50e-10View matrix ↘
Sequence logo for DAL82_A
Fisher’s P-value6.50e-10
Information content17.72
Max PWM score16.69
Recommended cutoff11.06
Position frequency matrix (PFM)
A | 0.48 0.02 0.68 0.90 0.97 0.97 0.06 0.03 0.01 0.03 0.01 0.01 0.01 0.01 
C | 0.01 0.18 0.02 0.01 0.01 0.01 0.01 0.14 0.01 0.94 0.01 0.03 0.01 0.12 
G | 0.51 0.52 0.29 0.01 0.01 0.01 0.18 0.46 0.97 0.01 0.97 0.67 0.85 0.05 
T | 0.01 0.28 0.01 0.09 0.01 0.01 0.75 0.37 0.01 0.02 0.01 0.29 0.13 0.81
Position count matrix (PCM)
A |  48   2  68  90  97  97   6   3   1   3   1   1   1   1 
C |   1  18   2   1   1   1   1  14   1  94   1   3   1  12 
G |  51  52  28   1   1   1  18  46  97   1  97  67  85   5 
T |   1  28   1   9   1   1  75  37   1   2   1  28  13  81
Position weight matrix (PWM)
A |  0.41 -2.77  0.75  1.03  1.11  1.11 -1.67 -2.37 -3.47 -2.37 -3.47 -3.47 -3.47 -3.47 
C | -2.89  0.00 -2.20 -2.89 -2.89 -2.89 -2.89 -0.25 -2.89  1.65 -2.89 -1.79 -2.89 -0.41 
G |  1.04  1.06  0.48 -2.89 -2.89 -2.89  0.00  0.94  1.68 -2.89  1.68  1.31  1.55 -1.28 
T | -3.47 -0.13 -3.47 -1.27 -3.47 -3.47  0.85  0.15 -3.47 -2.77 -3.47 -0.10 -0.90  0.93
Foat et. al.
DAL82_CFoat et. al.P = 0.5164View matrix ↘
Sequence logo for DAL82_C
Fisher’s P-value0.5164
Information content17.04
Max PWM score15.08
Recommended cutoff9.26
Position frequency matrix (PFM)
A | 0.02 0.01 0.01 0.97 0.01 0.01 0.01 0.57 0.01 0.11 0.01 0.69 0.56 
C | 0.88 0.42 0.10 0.01 0.93 0.01 0.67 0.27 0.97 0.01 0.01 0.01 0.42 
G | 0.01 0.57 0.32 0.01 0.05 0.01 0.02 0.01 0.01 0.88 0.01 0.01 0.01 
T | 0.09 0.01 0.58 0.01 0.01 0.97 0.30 0.16 0.01 0.01 0.97 0.30 0.01
Position count matrix (PCM)
A |   2   1   1  97   1   1   1  56   1  11   1  69  56 
C |  88  42  10   1  93   1  67  27  97   1   1   1  42 
G |   1  56  32   1   5   1   2   1   1  88   1   1   1 
T |   9   1  57   1   1  97  30  16   1   1  97  30   1
Position weight matrix (PWM)
A | -2.77 -3.47 -3.47  1.11 -3.47 -3.47 -3.47  0.58 -3.47 -1.07 -3.47  0.77  0.56 
C |  1.59  0.85 -0.59 -2.89  1.64 -2.89  1.31  0.41  1.68 -2.89 -2.89 -2.89  0.85 
G | -2.89  1.15  0.58 -2.89 -1.28 -2.89 -2.20 -2.89 -2.89  1.59 -2.89 -2.89 -2.89 
T | -1.27 -3.47  0.59 -3.47 -3.47  1.11 -0.06 -0.69 -3.47 -3.47  1.11 -0.06 -3.47
Foat et. al.
DAL82Harbison et. al.P = 0.0001411View matrix ↘
Sequence logo for DAL82
Fisher’s P-value0.0001411
Information content9.606
Max PWM score8.3
Recommended cutoff7.13
Position frequency matrix (PFM)
A | 0.011 0.922 0.011 0.887 0.953 0.011 0.638 
C | 0.007 0.033 0.007 0.051 0.007 0.038 0.111 
G | 0.970 0.033 0.007 0.024 0.029 0.939 0.142 
T | 0.011 0.011 0.975 0.038 0.011 0.011 0.110
Position count matrix (PCM)
A |   1  92   1  88  95   1  63 
C |   0   3   0   5   0   3  11 
G |  97   3   0   2   2  93  14 
T |   1   1  97   3   1   1  11
Position weight matrix (PWM)
A | -3.37  1.06 -3.37  1.02  1.09 -3.37  0.69 
C | -3.25 -1.70 -3.25 -1.26 -3.25 -1.56 -0.48 
G |  1.68 -1.70 -3.25 -2.01 -1.83  1.65 -0.24 
T | -3.37 -3.37  1.11 -2.13 -3.37 -3.37 -1.07
Harbison et. al.
DAL82Macisaac et. alP = 1.05e-09View matrix ↘
Sequence logo for DAL82
Fisher’s P-value1.05e-09
Information content8.465
Max PWM score9.56
Recommended cutoff7.31
Position frequency matrix (PFM)
A | 0.853 0.959 0.652 0.369 0.361 0.054 0.136 0.036 0.066 0.204 
C | 0.001 0.006 0.034 0.160 0.007 0.127 0.068 0.599 0.001 0.375 
G | 0.118 0.004 0.073 0.246 0.096 0.004 0.762 0.002 0.932 0.101 
T | 0.028 0.031 0.241 0.226 0.536 0.815 0.034 0.363 0.001 0.320
Position count matrix (PCM)
A |  85  95  65  36  36   5  13   3   6  20 
C |   0   0   3  16   0  12   6  59   0  37 
G |  11   0   7  24   9   0  76   0  93  10 
T |   2   3  24  22  53  81   3  36   0  32
Position weight matrix (PWM)
A |  0.98  1.10  0.71  0.14  0.12 -1.78 -0.86 -2.18 -1.58 -0.45 
C | -5.19 -3.40 -1.67 -0.12 -3.25 -0.35 -0.97  1.20 -5.19  0.73 
G | -0.42 -3.81 -0.90  0.31 -0.63 -3.81  1.44 -4.50  1.64 -0.58 
T | -2.44 -2.33 -0.28 -0.35  0.52  0.93 -2.24  0.13 -5.77  0.00
Macisaac et. al
DAL82Pachkov et alP = 9.92e-05View matrix ↘
Sequence logo for DAL82
Fisher’s P-value9.92e-05
Information content19.56
Max PWM score15.83
Recommended cutoff13.64
Position frequency matrix (PFM)
A | 0.001 0.600 0.600 0.200 0.001 0.001 0.001 0.800 0.800 0.001 0.001 0.001 0.001 0.001 
C | 0.600 0.200 0.001 0.200 1.000 0.001 1.000 0.001 0.001 0.200 0.001 0.001 0.200 0.600 
G | 0.400 0.200 0.400 0.600 0.001 1.000 0.001 0.001 0.001 0.200 0.001 0.001 0.001 0.400 
T | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.200 0.200 0.600 1.000 1.000 0.800 0.001
Position count matrix (PCM)
A |   0  60  60  20   0   0   0  80  80   0   0   0   0   0 
C |  60  20   0  20 100   0 100   0   0  20   0   0  20  60 
G |  40  20  40  60   0 100   0   0   0  20   0   0   0  40 
T |   0   0   0   0   0   0   0  20  20  60 100 100  80   0
Position weight matrix (PWM)
A | -5.77  0.63  0.63 -0.47 -5.77 -5.77 -5.77  0.92  0.92 -5.77 -5.77 -5.77 -5.77 -5.77 
C |  1.20  0.11 -5.19  0.11  1.71 -5.19  1.71 -5.19 -5.19  0.11 -5.19 -5.19  0.11  1.20 
G |  0.80  0.11  0.80  1.20 -5.19  1.71 -5.19 -5.19 -5.19  0.11 -5.19 -5.19 -5.19  0.80 
T | -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -0.47 -0.47  0.63  1.14  1.14  0.92 -5.77
Pachkov et al
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 103 genes

YAL017W, YAL018C, YAL060W, YBR002C, YBR003W, YBR052C, YBR098W, YBR100W, YBR130C, YBR131W, YBR240C, YBR280C, YCL032W, YCL033C, YCL034W, YCL035C, YCR007C, YCR009C, YCR010C, YCR011C, YCR013C, YCR014C, YCR015C, YCR016W, YDL086W, YDL087C, YDL093W, YDL096C, YDR203W, YDR243C, YDR244W, YDR306C, YDR313C, YER099C, YER100W, YFR008W, YFR026C, YFR030W, YGL181W, YGL182C, YGL227W, YGL240W, YGL241W, YGL242C, YGL245W, YGL246C, YGR216C, YGR217W, YGR234W, YGR239C, YHL022C, YHL047C, YHR036W, YHR073W, YHR118C, YHR119W, YHR139C-A, YHR140W, YIL039W, YIL136W, YIL137C, YIR027C, YIR028W, YIR030C, YJL124C, YJR057W, YJR080C, YKL075C, YKL076C, YKR078W, YLR008C, YLR009W, YLR160C, YLR181C, YLR182W, YLR291C, YLR437C, YLR438W, YML119W, YML120C, YNL119W, YNL121C, YNL138W, YNL139C, YNL140C, YNL255C, YNL259C, YOL035C, YOL037C, YOL075C, YOL076W, YOL077C, YOL087C, YOL122C, YOR021C, YPL010W, YPL011C, YPL095C, YPL207W, YPL251W, YPL253C, YPR128C, YPR129W

Genes affected by TF deletion 312 genes

YDR004W, YDR064W, YDR034W-B, YDR404C, YGL236C, YIL148W, YJR048W, YJR085C, YNL052W, YOL012C, YNR061C, YAL024C, YBR189W, YLR062C, YLR461W, YNL275W, YOR004W, YBL079W, YER175C, YOR252W, YOR222W, YPL016W, YPR140W, YDR406W, YBR092C, YBR096W, YCR073W-A, YDL035C, YCR082W, YDR100W, YDR527W, YDR498C, YFL045C, YHR083W, YJR145C, YKL016C, YJR118C, YLL028W, YLL062C, YLL064C, YLR340W, YLR372W, YMR071C, YNL149C, YOL136C, YOL077C, YOL138C, YOL142W, YOR285W, YPL266W, YPR016C, YPR050C, YPR020W, YPR052C, YNR014W, YNR065C, YDL156W, YDR276C, YER024W, YER053C, YER056C-A, YGL135W, YGR182C, YGR214W, YIL018W, YJL177W, YNL301C, YPL144W, YOL077W-A, YPL271W, YPR051W, YPL089C, YBR252W, YDL187C, YDL219W, YDL221W, YDR281C, YER057C, YER087C-A, YGR217W, YIL051C, YML022W, YML058W, YNL302C, YPL081W, YIL126W, YBR042C, YCR019W, YCR020C-A, YDR016C, YDR076W, YDR018C, YDR046C, YDR078C, YDR374C, YDR438W, YDR376W, YDR378C, YER184C, YGL207W, YGL213C, YGR286C, YJR094W-A, YLR287C-A, YML123C, YMR022W, YML125C, YNL087W, YNL056W, YNL028W, YNL030W, YOR201C, YPL183W-A, YPL249C, YNL163C, YAL043C, YAL044C, YDL108W, YGL015C, YJL089W, YJL121C, YJL091C, YKL056C, YMR168C, YPL025C, YPL059W, YCR093W, YCR017C, YDR011W, YDR015C, YDR043C, YDR017C, YER185W, YGR287C, YJR090C, YOR266W, YPL218W, YPL249C-A, YAL014C, YAL045C, YER007C-A, YGR161C, YHR181W, YLR099C, YLR438W, YOR390W, YDR134C, YDR537C, YGR037C, YLR344W, YOL116W, YOL088C, YOR297C, YPR028W, YDL164C, YNL315C, YDL038C, YLL006W, YLR345W, YOL143C, YPR053C, YNL314W, YCR024C-A, YDR414C, YDR418W, YER131W, YER162C, YHR010W, YIL158W, YKR057W, YLR230W, YLR264W, YLR295C, YNL067W, YNL069C, YOL002C, YPL252C, YDR208W, YDR236C, YEL026W, YKL058W, YLR104W, YLR110C, YPL005W, YPL037C, YBR088C, YDR417C, YEL060C, YLR073C, YBR084C-A, YFR023W, YIR017C, YJL004C, YLR356W, YLR388W, YOL120C, YOL092W, YPR062W, YPR004C, YDR298C, YER072W, YLR204W, YNL323W, YPL094C, YPL098C, YBR141C, YDL049C, YDL020C, YHR036W, YHR066W, YLL012W, YLR325C, YMR116C, YNL162W, YOL121C, YPR063C, YDL205C, YDL207W, YJL160C, YNL001W, YCR004C, YCR034W, YCR072C, YDR056C, YDR454C, YGL225W, YHL036W, YJR104C, YJR074W, YKR063C, YLR268W, YLR301W, YMR002W, YMR039C, YNL075W, YOL008W, YOL039W, YOL010W, YOR277C, YOR247W, YOR281C, YOR251C, YPL197C, YPL199C, YPL262W, YEL027W, YEL034W, YER019C-A, YHR141C, YLR048W, YLR112W, YLR050C, YCR028C-A, YCR031C, YGL222C, YIL133C, YIL103W, YJR073C, YJR109C, YNL070W, YOL065C, YOL040C, YOL071W, YPL234C, YBR210W, YEL070W, YGL030W, YGL032C, YJL076W, YKL096W-A, YNL230C, YNL294C, YDL054C, YDR122W, YDR154C, YDR520C, YFR031C-A, YIR022W, YJL045W, YJR135W-A, YKL006W, YJR139C, YLR398C, YNL135C, YNL137C, YOR369C, YOR311C, YPR044C, YCL007C, YIL011W, YLR146C, YML078W, YML106W, YML052W, YNL010W, YNR053C, YPL170W, YGR050C, YLR395C, YLR333C, YMR123W, YOL101C, YPR043W, YDL247W, YER045C, YER077C, YKR005C, YML077W, YML081C-A, YNL324W, YNR048W, YNL326C

Genes supported by both experiments 4 genes

YGR217W, YHR036W, YLR438W, YOL077C

Predicted TF–TF partners 5 genes

IME1, PDR1, PHD1, UME6, YER184C

Explore 5 original interaction plots →