S.ScerTFYeast transcription factor database Aaron Spivak
← All factors / TF RECORD

DAL81

YIR023W, UGA35

View at SGD ↗

Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Foat et. al.
Fisher’s P-value1.83e-14
Information content15.16
Max PWM score13.92
Recommended cutoff10.23
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.03 0.50 0.01 0.01 0.01 0.08 0.71 0.01 0.01 0.02 0.11 0.15 
C | 0.01 0.45 0.01 0.96 0.01 0.01 0.01 0.01 0.97 0.01 0.57 0.71 
G | 0.10 0.05 0.11 0.02 0.01 0.01 0.23 0.01 0.01 0.01 0.27 0.13 
T | 0.86 0.01 0.87 0.01 0.97 0.90 0.06 0.97 0.01 0.96 0.04 0.01
Position count matrix (PCM)
A |   3  50   1   1   1   8  71   1   1   2  11  15 
C |   1  45   1  96   1   1   1   1  97   1  56  71 
G |  10   5  11   2   1   1  23   1   1   1  27  13 
T |  86   1  87   1  97  90   6  97   1  96   4   1
Position weight matrix (PWM)
A | -2.37  0.45 -3.47 -3.47 -3.47 -1.39  0.80 -3.47 -3.47 -2.77 -1.07 -0.76 
C | -2.89  0.92 -2.89  1.67 -2.89 -2.89 -2.89 -2.89  1.68 -2.89  1.15  1.37 
G | -0.59 -1.28 -0.49 -2.20 -2.89 -2.89  0.25 -2.89 -2.89 -2.89  0.41 -0.33 
T |  0.99 -3.47  1.00 -3.47  1.11  1.03 -1.67  1.11 -3.47  1.10 -2.08 -3.47
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 4

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

DAL81_BFoat et. al.P = 0.0002958View matrix ↘
Sequence logo for DAL81_B
Fisher’s P-value0.0002958
Information content15.72
Max PWM score17.2
Recommended cutoff9.71
Position frequency matrix (PFM)
A | 0.11 0.01 0.18 0.69 0.35 0.49 0.02 0.07 0.06 0.09 0.95 0.65 0.27 0.34 0.47 0.68 
C | 0.40 0.01 0.01 0.01 0.01 0.09 0.94 0.66 0.01 0.51 0.01 0.12 0.59 0.45 0.30 0.03 
G | 0.49 0.97 0.78 0.19 0.34 0.42 0.03 0.01 0.92 0.03 0.03 0.22 0.01 0.15 0.09 0.28 
T | 0.01 0.01 0.03 0.11 0.31 0.01 0.01 0.26 0.01 0.37 0.01 0.01 0.14 0.06 0.14 0.01
Position count matrix (PCM)
A |  11   1  18  69  35  49   2   7   6   9  95  65  27  34  47  68 
C |  40   1   1   1   1   9  94  66   1  51   1  12  59  45  30   3 
G |  49  97  78  19  34  42   3   1  92   3   3  22   1  15   9  28 
T |   1   1   3  11  31   1   1  26   1  37   1   1  14   6  14   1
Position weight matrix (PWM)
A | -1.07 -3.47 -0.58  0.77  0.09  0.43 -2.77 -1.52 -1.67 -1.27  1.09  0.71 -0.17  0.06  0.38  0.75 
C |  0.80 -2.89 -2.89 -2.89 -2.89 -0.69  1.65  1.30 -2.89  1.04 -2.89 -0.41  1.19  0.92  0.51 -1.79 
G |  1.00  1.68  1.47  0.05  0.64  0.85 -1.79 -2.89  1.63 -1.79 -1.79  0.20 -2.89 -0.18 -0.69  0.44 
T | -3.47 -3.47 -2.37 -1.07 -0.03 -3.47 -3.47 -0.21 -3.47  0.15 -3.47 -3.47 -0.83 -1.67 -0.83 -3.47
Foat et. al.
DAL81_CFoat et. al.P = 3.17e-09View matrix ↘
Sequence logo for DAL81_C
Fisher’s P-value3.17e-09
Information content20.47
Max PWM score17.88
Recommended cutoff11.82
Position frequency matrix (PFM)
A | 0.01 0.27 0.01 0.87 0.01 0.10 0.01 0.01 0.64 0.14 0.01 0.01 0.56 
C | 0.02 0.07 0.97 0.01 0.91 0.01 0.01 0.97 0.01 0.84 0.95 0.01 0.04 
G | 0.94 0.65 0.01 0.02 0.07 0.88 0.97 0.01 0.35 0.01 0.03 0.63 0.01 
T | 0.03 0.01 0.01 0.10 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.36 0.39
Position count matrix (PCM)
A |   1  27   1  87   1  10   1   1  64  14   1   1  56 
C |   2   7  97   1  91   1   1  97   1  84  95   1   4 
G |  94  65   1   2   7  88  97   1  35   1   3  63   1 
T |   3   1   1  10   1   1   1   1   1   1   1  36  39
Position weight matrix (PWM)
A | -3.47 -0.17 -3.47  1.00 -3.47 -1.16 -3.47 -3.47  0.69 -0.83 -3.47 -3.47  0.56 
C | -2.20 -0.94  1.68 -2.89  1.62 -2.89 -2.89  1.68 -2.89  1.54  1.66 -2.89 -1.50 
G |  1.65  1.28 -2.89 -2.20 -0.94  1.59  1.68 -2.89  0.66 -2.89 -1.79  1.25 -2.89 
T | -2.37 -3.47 -3.47 -1.16 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47 -3.47  0.12  0.20
Foat et. al.
DAL81Harbison et. al.P = 0.03212View matrix ↘
Sequence logo for DAL81
Fisher’s P-value0.03212
Information content35.83
Max PWM score27.86
Recommended cutoff27.86
Position frequency matrix (PFM)
A | 0.965 0.965 0.965 0.965 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.965 0.012 0.012 
C | 0.012 0.012 0.012 0.012 0.012 0.965 0.965 0.012 0.965 0.012 0.012 0.012 0.965 0.012 0.012 0.012 0.012 0.012 0.012 
G | 0.012 0.012 0.012 0.012 0.965 0.012 0.012 0.965 0.012 0.965 0.965 0.965 0.012 0.965 0.965 0.965 0.012 0.012 0.012 
T | 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.965 0.965
Position count matrix (PCM)
A |  96  96  96  96   1   1   1   1   1   1   1   1   1   1   1   1  96   1   1 
C |   1   1   1   1   1  96  96   1  96   1   1   1  96   1   1   1   1   1   1 
G |   1   1   1   1  96   1   1  96   1  96  96  96   1  96  96  96   1   1   1 
T |   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  96  96
Position weight matrix (PWM)
A |  1.10  1.10  1.10  1.10 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28  1.10 -3.28 -3.28 
C | -2.71 -2.71 -2.71 -2.71 -2.71  1.68  1.68 -2.71  1.68 -2.71 -2.71 -2.71  1.68 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 
G | -2.71 -2.71 -2.71 -2.71  1.68 -2.71 -2.71  1.68 -2.71  1.68  1.68  1.68 -2.71  1.68  1.68  1.68 -2.71 -2.71 -2.71 
T | -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28  1.10  1.10
Harbison et. al.
DAL81Macisaac et. alP = 0.03212View matrix ↘
Sequence logo for DAL81
Fisher’s P-value0.03212
Information content35.76
Max PWM score27.86
Recommended cutoff27.86
Position frequency matrix (PFM)
A | 0.964 0.964 0.964 0.964 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.964 0.012 0.012 
C | 0.012 0.012 0.012 0.012 0.012 0.964 0.964 0.012 0.964 0.012 0.012 0.012 0.964 0.012 0.012 0.012 0.012 0.012 0.012 
G | 0.012 0.012 0.012 0.012 0.964 0.012 0.012 0.964 0.012 0.964 0.964 0.964 0.012 0.964 0.964 0.964 0.012 0.012 0.012 
T | 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.012 0.964 0.964
Position count matrix (PCM)
A |  96  96  96  96   1   1   1   1   1   1   1   1   1   1   1   1  96   1   1 
C |   1   1   1   1   1  96  96   1  96   1   1   1  96   1   1   1   1   1   1 
G |   1   1   1   1  96   1   1  96   1  96  96  96   1  96  96  96   1   1   1 
T |   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  96  96
Position weight matrix (PWM)
A |  1.10  1.10  1.10  1.10 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28  1.10 -3.28 -3.28 
C | -2.71 -2.71 -2.71 -2.71 -2.71  1.68  1.68 -2.71  1.68 -2.71 -2.71 -2.71  1.68 -2.71 -2.71 -2.71 -2.71 -2.71 -2.71 
G | -2.71 -2.71 -2.71 -2.71  1.68 -2.71 -2.71  1.68 -2.71  1.68  1.68  1.68 -2.71  1.68  1.68  1.68 -2.71 -2.71 -2.71 
T | -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28 -3.28  1.10  1.10
Macisaac et. al
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 92 genes

YBR040W, YBR068C, YBR069C, YBR119W, YBR178W, YBR195C, YCL012W, YCL014W, YCL018W, YCL024W, YCL025C, YCR039C, YCR040W, YCR041W, YDL007W, YDL041W, YDL043C, YDL150W, YDL153C, YDL182W, YDR046C, YDR047W, YDR065W, YDR072C, YDR073W, YDR098C, YDR098C-A, YDR098C-B, YDR114C, YDR472W, YDR508C, YDR510W, YEL033W, YEL034W, YEL035C, YEL044W, YEL045C, YEL046C, YER044C-A, YFR012W, YGL090W, YGL091C, YGL188C, YGL254W, YGR055W, YGR120C, YGR282C, YHR011W, YJL024C, YJL088W, YJL210W, YJL212C, YKL118W, YKR037C, YKR038C, YKR040C, YKR042W, YKR074W, YKR093W, YLR031W, YLR062C, YLR063W, YLR094C, YLR112W, YLR127C, YLR128W, YLR170C, YLR198C, YLR266C, YLR267W, YLR303W, YLR379W, YLR384C, YLR397C, YML031W, YML039W, YML040W, YMR056C, YMR085W, YOL077W-A, YOL078W, YOL080C, YOL125W, YOL126C, YOR279C, YOR281C, YOR283W, YPL123C, YPL124W, YPL265W, YPR035W, YPR145W

Genes affected by TF deletion 35 genes

YBR005W, YOL014W, YOL016C, YOR220W, YPL016W, YHR053C, YHR055C, YOR347C, YMR316W, YBR093C, YKL011C, YDR281C, YOR385W, YGR161C, YLR194C, YBR101C, YBR135W, YPL273W, YER035W, YMR321C, YIL064W, YGR136W, YGR142W, YCR060W, YNL096C, YDR209C, YGR137W, YOR052C, YGR019W, YDL241W, YBR185C, YGR173W, YJL142C, YKL036C, YNL007C