S.ScerTFYeast transcription factor database Aaron Spivak
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CUP2

YGL166W, ACE1

View at SGD ↗

Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Pachkov et al
Fisher’s P-value0.1373
Information content15.14
Max PWM score12.58
Recommended cutoff12.25
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.001 1.000 0.001 0.222 0.667 0.444 1.000 1.000 0.778 0.444 0.222 
C | 0.778 0.001 0.001 0.778 0.001 0.111 0.001 0.001 0.001 0.001 0.001 
G | 0.001 0.001 1.000 0.001 0.333 0.444 0.001 0.001 0.222 0.001 0.778 
T | 0.222 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.556 0.001
Position count matrix (PCM)
A |   0 100   0  22  66  44 100 100  77  44  22 
C |  77   0   0  77   0  11   0   0   0   0   0 
G |   0   0 100   0  33  44   0   0  22   0  77 
T |  22   0   0   0   0   0   0   0   0  55   0
Position weight matrix (PWM)
A | -5.77  1.14 -5.77 -0.37  0.73  0.33  1.14  1.14  0.89  0.33 -0.37 
C |  1.46 -5.19 -5.19  1.46 -5.19 -0.48 -5.19 -5.19 -5.19 -5.19 -5.19 
G | -5.19 -5.19  1.71 -5.19  0.62  0.90 -5.19 -5.19  0.21 -5.19  1.46 
T | -0.37 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77 -5.77  0.55 -5.77
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 0

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

No additional matrices in the original archive.

03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 1 genes

No Data

Genes affected by TF deletion 169 genes

YJR085C, YJR054W, YNL016W, YOL047C, YHR146W, YKL111C, YMR220W, YMR192W, YOR033C, YGL166W, YOL048C, YAL053W, YEL011W, YLR433C, YOR038C, YPL014W, YPL016W, YMR103C, YMR105C, YOR289W, YPL283C, YDR276C, YGL071W, YGR250C, YKL205W, YMR104C, YOL076W, YOR318C, YPL271W, YER057C, YGR183C, YIL015W, YLR183C, YPL141C, YCR021C, YDR074W, YHR001W-A, YLR252W, YOL052C-A, YPL183W-A, YDL072C, YLR033W, YOR073W, YOR043W, YOR075W, YPL160W, YDR011W, YER150W, YHL021C, YIL087C, YLR251W, YML120C, YMR023C, YNL055C, YOR228C, YJR148W, YML100W, YGR131W, YFR015C, YFR017C, YMR084W, YOR355W, YPR028W, YER038C, YGL147C, YML093W, YGR008C, YIR035C, YLR375W, YMR081C, YNL118C, YOR324C, YPR055W, YLL023C, YJL186W, YJL220W, YNR038W, YPL087W, YBR209W, YGR138C, YLR110C, YOR017W, YOR051C, YPL066W, YGL188C, YKR056W, YLR258W, YNL068C, YAR020C, YAR027W, YAL055W, YBR240C, YDL113C, YDR265W, YEL025C, YEL057C, YER008C, YEL059C-A, YER010C, YGL056C, YGL060W, YGR139W, YJL064W, YJL066C, YJL098W, YKL091C, YKL126W, YMR235C, YMR239C, YPL063W, YBR142W, YDL048C, YLL046C, YLR356W, YLR390W, YMR122C, YOL090W, YOR361C, YER072W, YHR219W, YDR513W, YLR387C, YNL160W, YOL089C, YOL119C, YOL123W, YER067W, YER044C, YBR054W, YBR060C, YJR046W, YLR297W, YMR037C, YNL103W, YOR217W, YBR183W, YHR136C, YMR216C, YDR055W, YMR001C, YMR034C, YHR135C, YJL076W, YJL110C, YJL142C, YKL096W-A, YLR049C, YLR452C, YLR427W, YMR181C, YMR211W, YMR250W, YCR099C, YDR122W, YLL026W, YNL135C, YCL040W, YER049W, YKL194C, YLR178C, YFL068W, YLR327C, YLR395C, YNL200C, YOR370C, YOR372C, YGR209C, YML081C-A, YMR277W