← All factors / TF RECORD
CEP3
YMR168C, CSL1, CBF3B, CBF3
Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the centromere; contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain, and a putative coiled coil dimerization domain
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content13.79
Max PWM score18.61
Recommended cutoff13.95
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.09 0.24 0.23 0.13 0.41 0.11 0.03 0.01 0.01 0.01 0.01 0.78 0.89 0.66 0.21 0.35 0.12 0.20 0.42 0.17 C | 0.18 0.15 0.43 0.31 0.15 0.57 0.37 0.03 0.96 0.28 0.01 0.04 0.01 0.14 0.32 0.28 0.16 0.16 0.11 0.13 G | 0.58 0.48 0.06 0.48 0.21 0.17 0.09 0.01 0.02 0.70 0.97 0.14 0.03 0.10 0.11 0.15 0.19 0.43 0.30 0.57 T | 0.15 0.13 0.27 0.08 0.23 0.15 0.52 0.95 0.01 0.01 0.01 0.03 0.07 0.10 0.36 0.23 0.53 0.20 0.17 0.13
Position count matrix (PCM)
A | 9 24 23 13 41 11 3 1 1 1 1 78 89 66 21 35 12 20 42 17 C | 18 15 43 31 15 56 37 3 96 28 1 4 1 14 32 28 16 16 11 13 G | 57 48 6 48 21 17 9 1 2 70 97 14 3 10 11 15 19 43 30 56 T | 15 13 27 8 23 15 52 95 1 1 1 3 7 10 36 23 53 20 17 13
Position weight matrix (PWM)
A | -1.27 -0.29 -0.33 -0.90 0.25 -1.07 -2.37 -3.47 -3.47 -3.47 -3.47 0.89 1.02 0.72 -0.42 0.09 -0.98 -0.47 0.27 -0.63 C | 0.00 -0.18 0.87 0.54 -0.18 1.15 0.72 -1.79 1.67 0.44 -2.89 -1.50 -2.89 -0.25 0.58 0.44 -0.12 -0.12 -0.49 -0.33 G | 1.17 0.98 -1.10 0.98 0.15 -0.06 -0.69 -2.89 -2.20 1.36 1.68 -0.25 -1.79 -0.59 -0.49 -0.18 0.05 0.87 0.51 1.15 T | -0.76 -0.90 -0.17 -1.39 -0.33 -0.76 0.49 1.09 -3.47 -3.47 -3.47 -2.37 -1.52 -1.16 0.12 -0.33 0.50 -0.47 -0.63 -0.90
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 2
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
CEP3Badis et. al.P = No dataView matrix ↘
Fisher’s P-valueNo data
Information content11.09
Max PWM score9.38
Recommended cutoff7.04
Position frequency matrix (PFM)
A | 0.04 0.01 0.01 0.01 0.01 0.91 0.91 C | 0.56 0.01 0.97 0.01 0.01 0.01 0.03 G | 0.04 0.01 0.01 0.97 0.97 0.01 0.03 T | 0.36 0.97 0.01 0.01 0.01 0.07 0.03
Position count matrix (PCM)
A | 4 1 1 1 1 91 91 C | 56 1 97 1 1 1 3 G | 4 1 1 97 97 1 3 T | 36 97 1 1 1 7 3
Position weight matrix (PWM)
A | -2.08 -3.47 -3.47 -3.47 -3.47 1.05 1.05 C | 1.13 -2.89 1.68 -2.89 -2.89 -2.89 -1.79 G | -1.50 -2.89 -2.89 1.68 1.68 -2.89 -1.79 T | 0.12 1.11 -3.47 -3.47 -3.47 -1.52 -2.37
CEP3Zhao and StormoP = No dataView matrix ↘
Fisher’s P-valueNo data
Information content3.95
Max PWM score6.3
Recommended cutoff4.72
Position frequency matrix (PFM)
A | 0.018 0.001 0.200 0.144 0.243 0.222 0.197 0.220 C | 0.793 0.027 0.145 0.318 0.318 0.285 0.292 0.288 G | 0.009 0.005 0.516 0.355 0.203 0.220 0.225 0.238 T | 0.180 0.967 0.139 0.182 0.236 0.274 0.286 0.255
Position count matrix (PCM)
A | 1 0 20 14 24 22 19 22 C | 79 2 14 31 31 28 29 28 G | 0 0 51 35 20 22 22 23 T | 18 96 13 18 23 27 28 25
Position weight matrix (PWM)
A | -2.88 -5.77 -0.47 -0.80 -0.28 -0.37 -0.49 -0.37 C | 1.48 -1.90 -0.22 0.57 0.57 0.46 0.48 0.47 G | -3.00 -3.58 1.05 0.68 0.12 0.20 0.22 0.28 T | -0.58 1.11 -0.83 -0.56 -0.30 -0.16 -0.11 -0.23
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data
Predicted TF–TF partners 1 genes
MIG3